Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.L02705 Eucalyptus grandis HOM05D003958 ORTHO05D004864 1.4e-96 356.3 176 100.0
Eucgr.I01766 Eucalyptus grandis HOM05D003958 ORTHO05D004864 1.6e-89 332.8 172 95.9
PGR054G0003 Punica granatum HOM05D003958 ORTHO05D004864 7.2e-66 254.2 169 72.8
PGR119G1149 Punica granatum HOM05D003958 ORTHO05D004864 7.2e-66 254.2 169 72.8
Duzib147G0735 Durio zibethinus HOM05D003958 ORTHO05D004864 2.3e-64 249.2 170 72.4
Phvul.011G172200 Phaseolus vulgaris HOM05D003958 ORTHO05D004864 3.0e-64 248.8 169 72.2
QL02p075632 Quercus lobata HOM05D003958 ORTHO05D004864 5.2e-64 248.1 171 71.3
Lalb_Chr03g0031671 Lupinus albus HOM05D003958 ORTHO05D004864 2.0e-63 246.1 169 71.0
Ca_00369_v3 Cicer arietinum L. HOM05D003958 ORTHO05D004864 3.4e-63 245.4 172 69.2
Aqoxy3G00906 Aquilegia oxysepala HOM05D003958 ORTHO05D004864 4.4e-63 245.0 175 70.3
DCAR_009028 Daucus carota HOM05D003958 ORTHO05D004864 4.4e-63 245.0 174 69.5
Thecc.04G013700 Theobroma cacao HOM05D003958 ORTHO05D004864 5.7e-63 244.6 170 70.6
COL.COLO4_29053 Corchorus olitorius HOM05D003958 ORTHO05D004864 7.5e-63 244.2 170 71.8
Duzib147G0566 Durio zibethinus HOM05D003958 ORTHO05D004864 9.8e-63 243.8 170 71.2
Lj3g0001252 Lotus japonicus HOM05D003958 ORTHO05D004864 9.8e-63 243.8 169 70.4
Sc03g0007660 Simmondsia chinensis HOM05D003958 ORTHO05D004864 1.7e-62 243.0 171 72.5
Sopen02g031390 Solanum pennellii HOM05D003958 ORTHO05D004864 1.7e-62 243.0 171 73.1
Psat1g092800 Pisum sativum HOM05D003958 ORTHO05D004864 3.7e-62 241.9 171 70.8
Aqoxy2G00425 Aquilegia oxysepala HOM05D003958 ORTHO05D004864 4.9e-62 241.5 174 70.7
Sabra18G0098500 Salix brachista HOM05D003958 ORTHO05D004864 4.9e-62 241.5 170 70.0
TAR622G1043 Trochodendron aralioides HOM05D003958 ORTHO05D004864 4.9e-62 241.5 171 71.9
arahy.Tifrunner.gnm1.ann1.CB8F3G Arachis hypogaea HOM05D003958 ORTHO05D004864 8.3e-62 240.7 170 69.4
CANSAT64G0951 Cannabis sativa HOM05D003958 ORTHO05D004864 1.1e-61 240.4 175 71.4
Nitab4.5_0008215g0010 Nicotiana tabacum HOM05D003958 ORTHO05D004864 1.1e-61 240.4 173 71.1
Atru.chr6.2341 Acer truncatum HOM05D003958 ORTHO05D004864 1.8e-61 239.6 172 70.3
TPR.G33516 Trifolium pratense HOM05D003958 ORTHO05D004864 1.8e-61 239.6 166 70.5
arahy.Tifrunner.gnm1.ann1.38SPRB Arachis hypogaea HOM05D003958 ORTHO05D004864 2.4e-61 239.2 170 69.4
FvH4_6g51011 Fragaria vesca HOM05D003958 ORTHO05D004864 2.4e-61 239.2 171 69.6
Nitab4.5_0002739g0040 Nicotiana tabacum HOM05D003958 ORTHO05D004864 2.4e-61 239.2 171 71.3
Sabra18G0098900 Salix brachista HOM05D003958 ORTHO05D004864 2.4e-61 239.2 171 69.6
Sabra18G0099100 Salix brachista HOM05D003958 ORTHO05D004864 2.4e-61 239.2 171 70.2
Ciclev10016011m.g Citrus clementina HOM05D003958 ORTHO05D004864 3.1e-61 238.8 171 70.8
Sabra18G0101000 Salix brachista HOM05D003958 ORTHO05D004864 3.1e-61 238.8 171 69.6
Manes.17G113700 Manihot esculenta HOM05D003958 ORTHO05D004864 4.1e-61 238.4 171 70.8
PGSC0003DMG400000483 Solanum tuberosum HOM05D003958 ORTHO05D004864 4.1e-61 238.4 171 71.9
EL10Ac9g21169 Beta vulgaris HOM05D003958 ORTHO05D004864 9.2e-61 237.3 171 67.8
CiPaw.03G040700 Carya illinoinensis HOM05D003958 ORTHO05D004864 9.2e-61 237.3 171 70.2
Gohir.D09G027100 Gossypium hirsutum HOM05D003958 ORTHO05D004864 1.2e-60 236.9 170 70.0
Sabra18G0100500 Salix brachista HOM05D003958 ORTHO05D004864 1.2e-60 236.9 171 69.6
Lj2g0025561 Lotus japonicus HOM05D003958 ORTHO05D004864 1.6e-60 236.5 169 68.0
ClCG01G008920 Citrullus lanatus HOM05D003958 ORTHO05D004864 2.7e-60 235.7 170 67.6
Gorai.006G031600 Gossypium raimondii HOM05D003958 ORTHO05D004864 2.7e-60 235.7 170 70.0
MD09G1029500 Malus domestica HOM05D003958 ORTHO05D004864 2.7e-60 235.7 171 68.4
Peaxi162Scf00129g01325 Petunia axillaris HOM05D003958 ORTHO05D004864 2.7e-60 235.7 171 71.3
Potri.018G120500 Populus trichocarpa HOM05D003958 ORTHO05D004864 2.7e-60 235.7 171 70.8
Medtr6g047800 Medicago truncatula HOM05D003958 ORTHO05D004864 3.5e-60 235.3 170 69.4
CSS0020788 Camellia sinensis var. sinensis HOM05D003958 ORTHO05D004864 4.5e-60 235.0 171 70.8
CSS0020854 Camellia sinensis var. sinensis HOM05D003958 ORTHO05D004864 4.5e-60 235.0 171 70.8
CAN.G206.10 Capsicum annuum HOM05D003958 ORTHO05D004864 4.5e-60 235.0 171 70.8
Prupe.3G287900 Prunus persica HOM05D003958 ORTHO05D004864 7.8e-60 234.2 171 68.4
TPR.G11724 Trifolium pratense HOM05D003958 ORTHO05D004864 7.8e-60 234.2 170 67.1
Ca_00876_v3 Cicer arietinum L. HOM05D003958 ORTHO05D004864 1.0e-59 233.8 168 69.0
Duzib147G0897 Durio zibethinus HOM05D003958 ORTHO05D004864 1.0e-59 233.8 171 69.6
CiPaw.04G026700 Carya illinoinensis HOM05D003958 ORTHO05D004864 1.3e-59 233.4 170 67.1
RcHm_v2.0_Chr2g0172551 Rosa chinensis HOM05D003958 ORTHO05D004864 1.3e-59 233.4 171 69.0
Phvul.006G181700 Phaseolus vulgaris HOM05D003958 ORTHO05D004864 1.7e-59 233.0 172 69.2
PSO832G3613 Papaver somniferum HOM05D003958 ORTHO05D004864 2.9e-59 232.3 176 68.8
TWI12G0059 Tripterygium wilfordii HOM05D003958 ORTHO05D004864 2.9e-59 232.3 171 73.1
VMungo0540G0822 Vigna mungo HOM05D003958 ORTHO05D004864 3.8e-59 231.9 172 68.6
HanXRQChr09g0255001 Helianthus annuus HOM05D003958 ORTHO05D004864 5.0e-59 231.5 172 68.6
PSO063G1059 Papaver somniferum HOM05D003958 ORTHO05D004864 5.0e-59 231.5 176 68.8
Psat1g202680 Pisum sativum HOM05D003958 ORTHO05D004864 5.0e-59 231.5 169 67.5
Sed0009763 Sechium edule HOM05D003958 ORTHO05D004864 5.0e-59 231.5 170 65.9
CsaV3_1G037790 Cucumis sativus L. HOM05D003958 ORTHO05D004864 8.6e-59 230.7 170 66.5
Gohir.A09G027800 Gossypium hirsutum HOM05D003958 ORTHO05D004864 1.1e-58 230.3 170 68.8
Lj7A595G65 Lonicera japonica HOM05D003958 ORTHO05D004864 1.1e-58 230.3 173 69.9
Lju41A38T12 Lonicera japonica HOM05D003958 ORTHO05D004864 1.1e-58 230.3 171 71.9
MELO3C021808.2 Cucumis melo HOM05D003958 ORTHO05D004864 1.5e-58 229.9 170 66.5
Nn7g37719 Nelumbo nucifera HOM05D003958 ORTHO05D004864 1.5e-58 229.9 171 68.4
Hund02774 Selenicereus undatus HOM05D003958 ORTHO05D004864 3.3e-58 228.8 171 66.7
Haze_14701 Corylus avellana HOM05D003958 ORTHO05D004864 4.3e-58 228.4 170 67.6
ECA232G3491 Erigeron canadensis HOM05D003958 ORTHO05D004864 4.3e-58 228.4 171 67.3
Migut.H00096 Erythranthe guttata HOM05D003958 ORTHO05D004864 5.6e-58 228.0 170 67.6
Cc02_g12190 Coffea canephora HOM05D003958 ORTHO05D004864 7.3e-58 227.6 169 65.1
Hma1.2p1_0858F.1_g229230 Hydrangea macrophylla HOM05D003958 ORTHO05D004864 9.5e-58 227.3 159 73.6
Gohir.D13G007800 Gossypium hirsutum HOM05D003958 ORTHO05D004864 1.6e-57 226.5 167 68.3
Glyma.13G234900 Glycine max HOM05D003958 ORTHO05D004864 2.1e-57 226.1 171 69.6
Aa31LG11G15350 Aethionema arabicum HOM05D003958 ORTHO05D004864 2.8e-57 225.7 181 65.7
AT5G14600 Arabidopsis thaliana HOM05D003958 ORTHO05D004864 6.1e-57 224.6 181 65.2
arahy.Tifrunner.gnm1.ann1.8Z0BSJ Arachis hypogaea HOM05D003958 ORTHO05D004864 8.0e-57 224.2 158 69.0
AL6G25360 Arabidopsis lyrata HOM05D003958 ORTHO05D004864 1.4e-56 223.4 181 64.6
CARHR198720 Cardamine hirsuta HOM05D003958 ORTHO05D004864 1.4e-56 223.4 185 63.2
MBI05_g22036_MAGBIO Magnolia biondii HOM05D003958 ORTHO05D004864 1.4e-56 223.4 171 66.7
THA.LOC104802398 Tarenaya hassleriana HOM05D003958 ORTHO05D004864 3.0e-56 222.2 176 65.3
Carub.0006s1277 Capsella rubella HOM05D003958 ORTHO05D004864 4.0e-56 221.9 183 63.4
Ah.07g203280 Amaranthus hybridus HOM05D003958 ORTHO05D004864 5.2e-56 221.5 161 67.1
Oeu057051.1 Olea europaea HOM05D003958 ORTHO05D004864 5.2e-56 221.5 170 65.3
Cpa.g.sc108.31 Carica papaya HOM05D003958 ORTHO05D004864 6.8e-56 221.1 171 68.4
AUR62002487 Chenopodium quinoa HOM05D003958 ORTHO05D004864 1.2e-55 220.3 191 59.2
Glyma.15G078000 Glycine max HOM05D003958 ORTHO05D004864 1.5e-55 219.9 170 67.6
Thhalv10014133m.g Eutrema salsugineum HOM05D003958 ORTHO05D004864 2.6e-55 219.2 178 64.0
CDE06G0036 Ceratophyllum demersum HOM05D003958 ORTHO05D004864 3.4e-55 218.8 169 65.7
Lsat_1_v5_gn_4_183181 Lactuca sativa HOM05D003958 ORTHO05D004864 4.4e-55 218.4 179 65.4
MSTRG.3157 Avicennia marina HOM05D003958 ORTHO05D004864 5.7e-55 218.0 171 66.1
THA.LOC104821089 Tarenaya hassleriana HOM05D003958 ORTHO05D004864 1.7e-54 216.5 171 63.7
A10p24040 Brassica napus HOM05D003958 ORTHO05D004864 2.2e-54 216.1 180 61.1
vmacro18265 Vaccinium macrocarpon HOM05D003958 ORTHO05D004864 2.2e-54 216.1 190 61.6
C09p62510 Brassica napus HOM05D003958 ORTHO05D004864 2.9e-54 215.7 180 61.1
BraA10t44467Z Brassica rapa HOM05D003958 ORTHO05D004864 8.3e-54 214.2 180 60.6
AUR62023705 Chenopodium quinoa HOM05D003958 ORTHO05D004864 1.1e-53 213.8 161 65.2
Sp6g29430 Schrenkiella parvula HOM05D003958 ORTHO05D004864 2.4e-53 212.6 177 61.6
unitig_62.g23558 Utricularia gibba HOM05D003958 ORTHO05D004864 7.0e-53 211.1 172 62.8
BolC9t59091H Brassica oleracea HOM05D003958 ORTHO05D004864 9.2e-53 210.7 187 58.3
Gorai.013G008200 Gossypium raimondii HOM05D003958 ORTHO05D004864 9.2e-53 210.7 155 68.4
BcaNung03113 Brassica carinata HOM05D003958 ORTHO05D004864 5.9e-52 208.0 181 61.3
Zm00001eb071120 Zea mays HOM05D003958 ORTHO05D004864 1.5e-50 203.4 168 61.3
CSS0027303 Camellia sinensis var. sinensis HOM05D003958 ORTHO05D004864 2.8e-49 199.1 170 62.9
Os04g0319600 Oryza sativa ssp. japonica HOM05D003958 ORTHO05D004864 6.2e-49 198.0 171 60.8
ATR0057G029 Amborella trichopoda HOM05D003958 ORTHO05D004864 1.8e-48 196.4 168 61.3
SEGI_01237 Sequoiadendron giganteum HOM05D003958 ORTHO05D004864 3.7e-46 188.7 186 55.4
SGA_v2.0_scaffold196G40937 Striga asiatica HOM05D003958 ORTHO05D004864 3.7e-46 188.7 170 61.2
Cfa007405 Carpinus fangiana HOM05D003958 ORTHO05D004864 4.9e-46 188.3 112 76.8
GSVIVG01032441001 Vitis vinifera HOM05D000462 ORTHO05D002607 4.1e-45 185.3 120 75.0
FAN14G0618 Fragaria x ananassa HOM05D003958 ORTHO05D004864 7.8e-44 181.0 116 73.3
FAN09G1134 Fragaria x ananassa HOM05D003958 ORTHO05D004864 1.5e-42 176.8 113 73.5
MD17G1031500 Malus domestica HOM05D003958 ORTHO05D004864 1.9e-42 176.4 113 74.3
Pp3c18_5220 Physcomitrium patens HOM05D003958 ORTHO05D004864 4.3e-42 175.3 193 51.8
SMO361G0280 Selaginella moellendorffii HOM05D003958 ORTHO05D004864 7.3e-42 174.5 176 53.4
BcaC03g13470 Brassica carinata HOM05D003958 ORTHO05D004864 9.5e-42 174.1 177 52.5
SMO361G0823 Selaginella moellendorffii HOM05D003958 ORTHO05D004864 9.5e-42 174.1 176 52.8
AagrBONN_evm.TU.Sc2ySwM_344.690 Anthoceros agrestis HOM05D003958 ORTHO05D004864 6.8e-40 167.9 182 51.6
Mapoly0053s0094 Marchantia polymorpha HOM05D003958 ORTHO05D004864 6.8e-40 167.9 211 46.9
FAN14G4368 Fragaria x ananassa HOM05D000001 ORTHO05D000003 5.4e-37 158.3 156 55.8
Dinv35088 Davidia involucrata HOM05D003958 ORTHO05D004864 7.1e-37 157.9 171 55.0
Medtr2g014590 Medicago truncatula HOM05D003958 ORTHO05D004864 5.6e-34 148.3 93 73.1
CBR_g9110 Chara braunii HOM05D003958 ORTHO05D004864 2.8e-33 146.0 109 61.5
HPP92_013732 Vanilla planifolia HOM05D003958 ORTHO05D004864 8.1e-33 144.4 91 70.3
arahy.Tifrunner.gnm1.ann1.FV4QAS Arachis hypogaea HOM05D003958 ORTHO05D004864 8.9e-32 141.0 89 74.2
SGA_v2.0_scaffold34G13865 Striga asiatica HOM05D003958 ORTHO05D004864 2.0e-31 139.8 140 55.7
arahy.Tifrunner.gnm1.ann1.M5ZQAR Arachis hypogaea HOM05D003958 ORTHO05D004864 4.9e-30 135.2 84 73.8
BcaC01g04875 Brassica carinata HOM05D003958 ORTHO05D004864 6.4e-30 134.8 167 44.9
Cre05.g244236 Chlamydomonas reinhardtii HOM05D003958 ORTHO05D004864 9.2e-29 131.0 144 50.0
Atru.chr6.2248 Acer truncatum HOM05D003958 ORTHO05D004864 3.5e-28 129.0 90 70.0
MCO10G191 Micromonas commoda HOM05D003958 ORTHO05D004864 3.0e-27 125.9 193 41.5
FAN05G2568 Fragaria x ananassa HOM05D003958 ORTHO05D004864 3.9e-27 125.6 135 53.3
PRCOL_00006622 Prasinoderma coloniale HOM05D003958 ORTHO05D004864 1.2e-23 114.0 222 33.8
C03p32750 Brassica napus HOM05D003958 ORTHO05D004864 6.4e-22 108.2 96 56.2
BolC3t15610H Brassica oleracea HOM05D003958 ORTHO05D004864 6.4e-22 108.2 96 56.2
arahy.Tifrunner.gnm1.ann1.Z5MU8N Arachis hypogaea HOM05D003958 ORTHO05D004864 2.7e-20 102.8 66 71.2
Gohir.D07G000766 Gossypium hirsutum HOM05D003958 ORTHO05D004864 2.7e-20 102.8 92 62.0
Gorai.013G272500 Gossypium raimondii HOM05D003958 ORTHO05D004864 1.0e-19 100.9 92 60.9
Gohir.D11G176600 Gossypium hirsutum HOM05D003958 ORTHO05D004864 2.3e-19 99.8 92 59.8
Haze_26162 Corylus avellana HOM05D003958 ORTHO05D004864 1.5e-18 97.1 167 37.7
Gorai.007G000600 Gossypium raimondii HOM05D001392 ORTHO05D014312 4.0e-16 89.0 80 57.5
FAN05G2311 Fragaria x ananassa HOM05D003958 ORTHO05D004864 2.0e-15 86.7 106 50.0
Nitab4.5_0001556g0020 Nicotiana tabacum HOM05D003958 ORTHO05D004864 2.6e-15 86.3 81 61.7
Gohir.D08G275100 Gossypium hirsutum HOM05D003958 ORTHO05D005872 1.3e-14 84.0 50 74.0
Gorai.N025700 Gossypium raimondii HOM05D003958 ORTHO05D005872 1.3e-14 84.0 50 74.0
Gohir.1Z049564 Gossypium hirsutum HOM05D003958 ORTHO05D004864 3.8e-14 82.4 50 72.0
Gohir.1Z049570 Gossypium hirsutum HOM05D003958 ORTHO05D005872 3.8e-14 82.4 50 72.0
Gohir.A02G000100 Gossypium hirsutum HOM05D003958 ORTHO05D005454 8.4e-14 81.3 47 72.3
Gohir.A12G000201 Gossypium hirsutum HOM05D003958 ORTHO05D004864 1.9e-13 80.1 96 53.1
Medtr2g014570 Medicago truncatula HOM05D003958 ORTHO05D004864 2.4e-08 63.2 62 54.8
Gohir.1Z049410 Gossypium hirsutum HOM05D003958 ORTHO05D004864 1.7e-06 57.0 33 75.8
Gohir.A09G249500 Gossypium hirsutum HOM05D003958 ORTHO05D004864 1.7e-06 57.0 33 75.8
BcaC03g13467 Brassica carinata HOM05D002486 ORTHO05D002606 4.9e-06 55.5 153 32.0


User provided reference genes

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