Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.L02626 Eucalyptus grandis HOM05D004471 ORTHO05D005345 4.2e-62 241.1 116 100.0
Eucgr.B01762 Eucalyptus grandis HOM05D004471 ORTHO05D005345 1.6e-61 239.2 116 99.1
MELO3C015368.2 Cucumis melo HOM05D004471 ORTHO05D005345 4.6e-53 211.1 119 84.9
Phvul.006G096500 Phaseolus vulgaris HOM05D004471 ORTHO05D005345 4.6e-53 211.1 122 83.6
Potri.013G031000 Populus trichocarpa HOM05D004471 ORTHO05D005345 4.6e-53 211.1 117 85.5
PGR031G3800 Punica granatum HOM05D004471 ORTHO05D005345 4.6e-53 211.1 119 85.7
Cfa006506 Carpinus fangiana HOM05D004471 ORTHO05D005345 6.1e-53 210.7 124 84.7
Nitab4.5_0002323g0100 Nicotiana tabacum HOM05D004471 ORTHO05D005345 6.1e-53 210.7 123 82.9
CAN.G617.9 Capsicum annuum HOM05D004471 ORTHO05D005345 7.9e-53 210.3 123 82.1
ClCG03G016550 Citrullus lanatus HOM05D004471 ORTHO05D005345 7.9e-53 210.3 119 84.0
Nitab4.5_0007843g0010 Nicotiana tabacum HOM05D004471 ORTHO05D005345 7.9e-53 210.3 123 82.1
Solyc04g072410.3 Solanum lycopersicum HOM05D004471 ORTHO05D005345 7.9e-53 210.3 123 82.1
Sopen04g028580 Solanum pennellii HOM05D004471 ORTHO05D005345 7.9e-53 210.3 123 82.1
PGSC0003DMG400027544 Solanum tuberosum HOM05D004471 ORTHO05D005345 7.9e-53 210.3 123 82.1
TWI56G0886 Tripterygium wilfordii HOM05D004471 ORTHO05D005345 1.0e-52 209.9 123 82.1
CsaV3_1G039430 Cucumis sativus L. HOM05D004471 ORTHO05D005345 1.3e-52 209.5 119 84.0
QL03p002667 Quercus lobata HOM05D004471 ORTHO05D005345 1.3e-52 209.5 121 83.5
Sed0002921 Sechium edule HOM05D004471 ORTHO05D005345 1.3e-52 209.5 120 84.2
GSVIVG01021973001 Vitis vinifera HOM05D004471 ORTHO05D005345 1.3e-52 209.5 122 86.1
TWI12G0951 Tripterygium wilfordii HOM05D004471 ORTHO05D005345 2.3e-52 208.8 123 81.3
Manes.09G160500 Manihot esculenta HOM05D004471 ORTHO05D005345 5.1e-52 207.6 123 82.1
Glyma.03G242500 Glycine max HOM05D004471 ORTHO05D005345 8.7e-52 206.8 124 80.6
Glyma.19G240000 Glycine max HOM05D004471 ORTHO05D005345 8.7e-52 206.8 124 80.6
CiPaw.07G011400 Carya illinoinensis HOM05D004471 ORTHO05D005345 1.1e-51 206.5 124 82.3
Cc00_g16770 Coffea canephora HOM05D004471 ORTHO05D005345 1.1e-51 206.5 123 80.5
Cc00_g29480 Coffea canephora HOM05D004471 ORTHO05D005345 1.1e-51 206.5 123 80.5
Cc02_g32300 Coffea canephora HOM05D004471 ORTHO05D005345 1.1e-51 206.5 123 80.5
AL3G15090 Arabidopsis lyrata HOM05D004471 ORTHO05D005345 1.5e-51 206.1 121 81.8
AL3G15360 Arabidopsis lyrata HOM05D004471 ORTHO05D005345 1.5e-51 206.1 121 81.8
CARHR079310 Cardamine hirsuta HOM05D004471 ORTHO05D005345 1.5e-51 206.1 122 80.3
VMungo0540G0886 Vigna mungo HOM05D004471 ORTHO05D005345 1.5e-51 206.1 124 82.3
BcaC05g29980 Brassica carinata HOM05D004471 ORTHO05D005345 1.9e-51 205.7 121 81.8
Carub.0003s0423 Capsella rubella HOM05D004471 ORTHO05D005345 1.9e-51 205.7 121 81.8
Thhalv10021604m.g Eutrema salsugineum HOM05D004471 ORTHO05D005345 1.9e-51 205.7 121 81.8
THA.LOC104818664 Tarenaya hassleriana HOM05D004471 ORTHO05D005345 1.9e-51 205.7 122 81.1
AT3G05000 Arabidopsis thaliana HOM05D004471 ORTHO05D005345 3.3e-51 204.9 121 81.0
Ca_09388_v3 Cicer arietinum L. HOM05D004471 ORTHO05D005345 3.3e-51 204.9 124 80.6
Migut.I00591 Erythranthe guttata HOM05D004471 ORTHO05D005345 3.3e-51 204.9 123 78.9
Lj2g0025202 Lotus japonicus HOM05D004471 ORTHO05D005345 3.3e-51 204.9 124 81.5
Medtr7g114210 Medicago truncatula HOM05D004471 ORTHO05D005345 3.3e-51 204.9 124 80.6
Psat3g008960 Pisum sativum HOM05D004471 ORTHO05D005345 3.3e-51 204.9 124 80.6
TAR629G0585 Trochodendron aralioides HOM05D004471 ORTHO05D005345 3.3e-51 204.9 124 80.6
BcaC05g29981 Brassica carinata HOM05D004471 ORTHO05D005345 4.3e-51 204.5 121 81.0
Peaxi162Scf00071g00744 Petunia axillaris HOM05D004471 ORTHO05D005345 4.3e-51 204.5 123 80.5
Dinv26586 Davidia involucrata HOM05D004471 ORTHO05D005345 7.4e-51 203.8 123 79.7
TPR.G6943 Trifolium pratense HOM05D004471 ORTHO05D005345 7.4e-51 203.8 124 80.6
Lsat_1_v5_gn_5_112921 Lactuca sativa HOM05D004471 ORTHO05D005345 9.7e-51 203.4 123 82.1
COL.COLO4_36062 Corchorus olitorius HOM05D004471 ORTHO05D005345 1.3e-50 203.0 122 83.6
HanXRQChr03g0072361 Helianthus annuus HOM05D004471 ORTHO05D005345 1.3e-50 203.0 119 82.4
EL10Ac4g09248 Beta vulgaris HOM05D004471 ORTHO05D005345 2.2e-50 202.2 123 78.9
HanXRQChr14g0442561 Helianthus annuus HOM05D004471 ORTHO05D005345 2.2e-50 202.2 119 81.5
Sp3g03820 Schrenkiella parvula HOM05D004471 ORTHO05D005345 2.2e-50 202.2 121 80.2
Thecc.05G251800 Theobroma cacao HOM05D004471 ORTHO05D005345 2.8e-50 201.8 122 82.8
ECA240G0709 Erigeron canadensis HOM05D005412 ORTHO05D006096 3.7e-50 201.4 115 84.3
Gohir.A11G236600 Gossypium hirsutum HOM05D004471 ORTHO05D005345 3.7e-50 201.4 122 82.8
Gohir.D11G247200 Gossypium hirsutum HOM05D004471 ORTHO05D005345 3.7e-50 201.4 122 82.8
Gorai.007G263500 Gossypium raimondii HOM05D004471 ORTHO05D005345 3.7e-50 201.4 122 82.8
Duzib177G1077 Durio zibethinus HOM05D004471 ORTHO05D005345 4.8e-50 201.1 122 82.8
Lalb_Chr18g0045321 Lupinus albus HOM05D004471 ORTHO05D005345 4.8e-50 201.1 125 77.6
Hund07017 Selenicereus undatus HOM05D004471 ORTHO05D005345 4.8e-50 201.1 120 80.8
Sc09g0003490 Simmondsia chinensis HOM05D004471 ORTHO05D005345 4.8e-50 201.1 124 77.4
Aqoxy5G00550 Aquilegia oxysepala HOM05D004471 ORTHO05D005345 8.2e-50 200.3 124 78.2
Actinidia05746 Actinidia chinensis HOM05D004471 ORTHO05D005345 3.1e-49 198.4 123 78.9
Atru.chr2.617 Acer truncatum HOM05D004471 ORTHO05D005345 4.1e-49 198.0 113 84.1
SGA_v2.0_scaffold143G35756 Striga asiatica HOM05D004471 ORTHO05D005345 4.1e-49 198.0 123 77.2
THA.LOC104821699 Tarenaya hassleriana HOM05D004471 ORTHO05D005345 4.1e-49 198.0 121 79.3
Manes.08G125300 Manihot esculenta HOM05D004471 ORTHO05D005345 9.0e-49 196.8 119 80.7
PSO170G4164 Papaver somniferum HOM05D004471 ORTHO05D005345 1.2e-48 196.4 126 76.2
MSTRG.11237 Avicennia marina HOM05D004471 ORTHO05D005345 1.5e-48 196.1 123 76.4
Duzib106G0566 Durio zibethinus HOM05D004471 ORTHO05D005345 2.6e-48 195.3 122 80.3
Gohir.A13G100500 Gossypium hirsutum HOM05D004471 ORTHO05D005345 2.6e-48 195.3 122 80.3
BraA05t22994Z Brassica rapa HOM05D004471 ORTHO05D005345 3.4e-48 194.9 114 81.6
PSO063G3713 Papaver somniferum HOM05D004471 ORTHO05D005345 3.4e-48 194.9 126 75.4
A05p42590 Brassica napus HOM05D004471 ORTHO05D005345 4.5e-48 194.5 114 81.6
C05p62270 Brassica napus HOM05D004471 ORTHO05D005345 4.5e-48 194.5 114 81.6
BolC5t34882H Brassica oleracea HOM05D004471 ORTHO05D005345 4.5e-48 194.5 114 81.6
HanXRQChr10g0301731 Helianthus annuus HOM05D004471 ORTHO05D005345 7.7e-48 193.7 116 80.2
BcaC07g40233 Brassica carinata HOM05D004471 ORTHO05D005345 1.0e-47 193.4 114 80.7
Sabra13G0030200 Salix brachista HOM05D004471 ORTHO05D005345 1.0e-47 193.4 109 83.5
Cfa006508 Carpinus fangiana HOM05D004471 ORTHO05D005345 1.3e-47 193.0 119 79.0
Aa31LG5G15450 Aethionema arabicum HOM05D004471 ORTHO05D005345 1.7e-47 192.6 114 79.8
CSS0025209 Camellia sinensis var. sinensis HOM05D004471 ORTHO05D005345 1.7e-47 192.6 123 74.8
FvH4_6g04260 Fragaria vesca HOM05D004471 ORTHO05D005345 1.7e-47 192.6 122 75.4
unitig_744.g24459 Utricularia gibba HOM05D004471 ORTHO05D005345 1.7e-47 192.6 123 74.8
FAN02G0766 Fragaria x ananassa HOM05D004471 ORTHO05D005345 2.2e-47 192.2 122 77.0
FAN05G4093 Fragaria x ananassa HOM05D004471 ORTHO05D005345 2.2e-47 192.2 122 77.0
FAN09G1403 Fragaria x ananassa HOM05D004471 ORTHO05D005345 2.2e-47 192.2 122 77.0
Potri.005G044300 Populus trichocarpa HOM05D004471 ORTHO05D005345 2.2e-47 192.2 118 79.7
Lalb_Chr02g0148511 Lupinus albus HOM05D004471 ORTHO05D005345 2.9e-47 191.8 124 74.2
Haze_04280 Corylus avellana HOM05D004471 ORTHO05D005345 3.8e-47 191.4 114 81.6
Nn1g09147 Nelumbo nucifera HOM05D004471 ORTHO05D005345 3.8e-47 191.4 125 76.0
Hund21668 Selenicereus undatus HOM05D004471 ORTHO05D005345 3.8e-47 191.4 123 76.4
Nn5g28667 Nelumbo nucifera HOM05D004471 ORTHO05D005345 5.0e-47 191.0 122 77.0
Os09g0244900 Oryza sativa ssp. japonica HOM05D004471 ORTHO05D005345 5.0e-47 191.0 123 75.6
Gohir.D13G104100 Gossypium hirsutum HOM05D004471 ORTHO05D005345 1.9e-46 189.1 117 80.3
Ciclev10002639m.g Citrus clementina HOM05D004471 ORTHO05D005345 2.5e-46 188.7 112 80.4
Zm00001eb421350 Zea mays HOM05D004471 ORTHO05D005345 2.5e-46 188.7 123 74.0
CDE06G1925 Ceratophyllum demersum HOM05D004471 ORTHO05D005345 3.2e-46 188.3 126 72.2
Os07g0291100 Oryza sativa ssp. japonica HOM05D004471 ORTHO05D005345 3.2e-46 188.3 123 74.0
CANSAT54G1584 Cannabis sativa HOM05D004471 ORTHO05D005345 4.2e-46 188.0 124 75.8
Cpa.g.sc117.10 Carica papaya HOM05D004471 ORTHO05D005345 4.2e-46 188.0 112 80.4
DCAR_003298 Daucus carota HOM05D004471 ORTHO05D005345 5.5e-46 187.6 129 76.0
MD00G1052700 Malus domestica HOM05D004471 ORTHO05D005345 5.5e-46 187.6 120 75.0
Lalb_Chr06g0167871 Lupinus albus HOM05D004471 ORTHO05D005345 7.2e-46 187.2 122 72.1
MD12G1229300 Malus domestica HOM05D004471 ORTHO05D005345 7.2e-46 187.2 120 74.2
Oeu041531.1 Olea europaea HOM05D004471 ORTHO05D005345 7.2e-46 187.2 117 74.4
MD12G1230100 Malus domestica HOM05D004471 ORTHO05D005345 9.4e-46 186.8 120 74.2
Zm00001eb084990 Zea mays HOM05D004471 ORTHO05D005345 1.6e-45 186.0 123 73.2
Lj9A676G54 Lonicera japonica HOM05D004471 ORTHO05D005345 2.7e-45 185.3 117 75.2
ATR0724G032 Amborella trichopoda HOM05D004471 ORTHO05D005345 6.1e-45 184.1 123 72.4
arahy.Tifrunner.gnm1.ann1.HP6SUR Arachis hypogaea HOM05D004471 ORTHO05D005345 1.0e-44 183.3 124 69.4
SEGI_33381 Sequoiadendron giganteum HOM05D004471 ORTHO05D005345 1.4e-44 183.0 124 71.8
AUR62000928 Chenopodium quinoa HOM05D004471 ORTHO05D005345 1.8e-44 182.6 114 77.2
FAN14G3038 Fragaria x ananassa HOM05D004471 ORTHO05D005345 1.8e-44 182.6 118 72.9
Ah.06g192940 Amaranthus hybridus HOM05D004471 ORTHO05D005345 3.0e-44 181.8 113 76.1
arahy.Tifrunner.gnm1.ann1.NV1QRL Arachis hypogaea HOM05D004471 ORTHO05D005345 3.9e-44 181.4 124 69.4
MBI07_g44660_MAGBIO Magnolia biondii HOM05D004471 ORTHO05D005345 3.9e-44 181.4 116 75.0
RcHm_v2.0_Chr3g0452951 Rosa chinensis HOM05D004471 ORTHO05D005345 3.9e-44 181.4 122 72.1
Ah.04g160020 Amaranthus hybridus HOM05D003164 ORTHO05D003575 5.1e-44 181.0 113 77.9
AUR62005042 Chenopodium quinoa HOM05D004471 ORTHO05D005345 5.1e-44 181.0 115 75.7
SGA_v2.0_scaffold40G15614 Striga asiatica HOM05D004471 ORTHO05D005345 5.1e-44 181.0 115 73.9
Oeu053263.1 Olea europaea HOM05D004471 ORTHO05D005345 8.8e-44 180.3 114 73.7
SHI18238 Sapria himalayana HOM05D004471 ORTHO05D005345 8.8e-44 180.3 121 72.7
HPP92_003010 Vanilla planifolia HOM05D004471 ORTHO05D005345 8.8e-44 180.3 121 71.1
Gorai.013G116700 Gossypium raimondii HOM05D004471 ORTHO05D005345 1.5e-43 179.5 112 80.4
vmacro19660 Vaccinium macrocarpon HOM05D004471 ORTHO05D005345 1.5e-43 179.5 113 77.0
arahy.Tifrunner.gnm1.ann1.9WIB0A Arachis hypogaea HOM05D004471 ORTHO05D005345 2.0e-43 179.1 117 71.8
Sabra05G0041100 Salix brachista HOM05D004471 ORTHO05D005345 4.3e-43 177.9 111 76.6
SalBow3G0010 Salvia bowleyana HOM05D004471 ORTHO05D005345 5.7e-43 177.6 113 74.3
Mapoly0002s0104 Marchantia polymorpha HOM05D004471 ORTHO05D005345 7.4e-43 177.2 123 68.3
FAN05G1097 Fragaria x ananassa HOM05D004471 ORTHO05D005345 1.3e-42 176.4 114 75.4
FAN09G1313 Fragaria x ananassa HOM05D004471 ORTHO05D005345 1.3e-42 176.4 114 75.4
Rhsim05G0148100 Rhododendron simsii HOM05D004471 ORTHO05D005345 1.7e-42 176.0 119 70.6
SMO347G0444 Selaginella moellendorffii HOM05D004471 ORTHO05D005345 1.7e-42 176.0 118 70.3
Pp3c4_10030 Physcomitrium patens HOM05D004471 ORTHO05D005345 2.2e-42 175.6 122 64.8
arahy.Tifrunner.gnm1.ann1.M2LFCZ Arachis hypogaea HOM05D004471 ORTHO05D005345 3.7e-42 174.9 117 69.2
Prupe.6G334800 Prunus persica HOM05D004471 ORTHO05D005345 6.3e-42 174.1 115 73.0
arahy.Tifrunner.gnm1.ann1.MZ802S Arachis hypogaea HOM05D004471 ORTHO05D005345 9.1e-41 170.2 113 70.8
HPP92_027546 Vanilla planifolia HOM05D004471 ORTHO05D005345 2.2e-39 165.6 112 68.8
CSS0028112 Camellia sinensis var. sinensis HOM05D004471 ORTHO05D005345 1.6e-37 159.5 101 76.2
Aa31LG1G24890 Aethionema arabicum HOM05D004471 ORTHO05D005345 4.7e-37 157.9 96 76.0
DCAR_022266 Daucus carota HOM05D004471 ORTHO05D005345 2.3e-36 155.6 111 65.8
DCAR_030062 Daucus carota HOM05D004471 ORTHO05D005345 3.0e-36 155.2 111 65.8
Aa31LG1G26450 Aethionema arabicum HOM05D004471 ORTHO05D005345 3.9e-36 154.8 100 73.0
Aa31LG1G21870 Aethionema arabicum HOM05D004471 ORTHO05D005345 1.7e-34 149.4 100 71.0
CBR_g38080 Chara braunii HOM05D004471 ORTHO05D005345 1.1e-33 146.7 146 52.1
Cre16.g663650 Chlamydomonas reinhardtii HOM05D004471 ORTHO05D005345 1.5e-30 136.3 116 54.3
QL03p002083 Quercus lobata HOM05D004471 ORTHO05D005345 1.2e-29 133.3 93 72.0
Lsat_1_v5_gn_9_110141 Lactuca sativa HOM05D004471 ORTHO05D005345 1.5e-27 126.3 80 77.5
RcHm_v2.0_Chr5g0055691 Rosa chinensis HOM05D004471 ORTHO05D005345 1.5e-22 109.8 102 55.9
arahy.Tifrunner.gnm1.ann1.BCR285 Arachis hypogaea HOM05D004471 ORTHO05D005345 1.2e-21 106.7 54 87.0
Pp3c13_13330 Physcomitrium patens HOM05D004471 ORTHO05D005345 2.0e-19 99.4 114 47.4
Aa31LG1G25270 Aethionema arabicum HOM05D004471 ORTHO05D005345 3.4e-19 98.6 115 48.7
CBR_g12958 Chara braunii HOM05D000019 ORTHO05D000002 2.2e-18 95.9 97 50.5
Cfa024495 Carpinus fangiana HOM05D004471 ORTHO05D005345 1.4e-17 93.2 111 45.0
MCO16G564 Micromonas commoda HOM05D004471 ORTHO05D005345 7.0e-17 90.9 131 36.6
PRCOL_00002528 Prasinoderma coloniale HOM05D004471 ORTHO05D005345 7.7e-16 87.4 133 37.6
CSS0014300 Camellia sinensis var. sinensis HOM05D002365 ORTHO05D005345 5.5e-14 81.3 38 89.5
QL03p002537 Quercus lobata HOM05D004471 ORTHO05D005345 4.8e-10 68.2 63 57.1
QL03p001871 Quercus lobata HOM05D004471 ORTHO05D337354 2.3e-07 59.3 66 54.5


User provided reference genes

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