Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.L02546 Eucalyptus grandis HOM05D000642 ORTHO05D000483 4.9e-31 137.1 67 100.0
Eucgr.G02755 Eucalyptus grandis HOM05D000642 ORTHO05D000483 2.9e-23 111.3 58 93.1
Eucgr.B01067 Eucalyptus grandis HOM05D035146 ORTHO05D000483 1.5e-16 89.0 51 82.4
Eucgr.G00149 Eucalyptus grandis HOM05D035146 ORTHO05D000483 4.5e-16 87.4 51 80.4
Ciclev10015165m.g Citrus clementina HOM05D000642 ORTHO05D000483 4.2e-14 80.9 65 53.8
Manes.17G059500 Manihot esculenta HOM05D000642 ORTHO05D000483 4.2e-14 80.9 64 54.7
PGR042G0701 Punica granatum HOM05D000642 ORTHO05D000483 7.1e-14 80.1 54 66.7
Eucgr.H02867 Eucalyptus grandis HOM05D000642 ORTHO05D000483 1.6e-13 79.0 46 82.6
Manes.16G042600 Manihot esculenta HOM05D000642 ORTHO05D000483 6.0e-13 77.0 64 53.1
CSS0019511 Camellia sinensis var. sinensis HOM05D000642 ORTHO05D000483 7.9e-13 76.6 63 57.1
CSS0043174 Camellia sinensis var. sinensis HOM05D000642 ORTHO05D000483 7.9e-13 76.6 63 57.1
Psat7g068400 Pisum sativum HOM05D000642 ORTHO05D000483 1.0e-12 76.3 58 56.9
Lalb_Chr13g0295301 Lupinus albus HOM05D000642 ORTHO05D000483 3.9e-12 74.3 64 50.0
TWI73G0697 Tripterygium wilfordii HOM05D000642 ORTHO05D000483 6.7e-12 73.6 58 62.1
Haze_06176 Corylus avellana HOM05D000642 ORTHO05D000483 1.1e-11 72.8 64 51.6
Atru.chr10.1564 Acer truncatum HOM05D000642 ORTHO05D000483 1.5e-11 72.4 60 55.0
MSTRG.14968 Avicennia marina HOM05D000642 ORTHO05D000483 1.5e-11 72.4 65 49.2
Medtr8g087400 Medicago truncatula HOM05D000642 ORTHO05D000483 1.5e-11 72.4 57 54.4
QL05p049803 Quercus lobata HOM05D000642 ORTHO05D000483 1.9e-11 72.0 53 58.5
vmacro11951 Vaccinium macrocarpon HOM05D000642 ORTHO05D000483 1.9e-11 72.0 58 56.9
Cpa.g.sc7.118 Carica papaya HOM05D000642 ORTHO05D000483 2.5e-11 71.6 61 55.7
Cfa000653 Carpinus fangiana HOM05D000642 ORTHO05D000483 2.5e-11 71.6 64 51.6
Prupe.4G067400 Prunus persica HOM05D000642 ORTHO05D000483 2.5e-11 71.6 65 53.8
Dinv12747 Davidia involucrata HOM05D000642 ORTHO05D000483 3.3e-11 71.2 64 51.6
Oeu031019.1 Olea europaea HOM05D000642 ORTHO05D000483 4.3e-11 70.9 60 53.3
RcHm_v2.0_Chr5g0011811 Rosa chinensis HOM05D000642 ORTHO05D000483 4.3e-11 70.9 58 55.2
Glyma.05G161200 Glycine max HOM05D000642 ORTHO05D000483 7.4e-11 70.1 57 52.6
TWI53G0667 Tripterygium wilfordii HOM05D000642 ORTHO05D000483 9.6e-11 69.7 58 58.6
Lj4g0006637 Lotus japonicus HOM05D000642 ORTHO05D000483 1.3e-10 69.3 65 46.2
TPR.G6725 Trifolium pratense HOM05D000642 ORTHO05D000483 1.6e-10 68.9 57 52.6
CiPaw.10G061600 Carya illinoinensis HOM05D000642 ORTHO05D000483 2.1e-10 68.6 66 48.5
Phvul.002G241300 Phaseolus vulgaris HOM05D000642 ORTHO05D000483 2.1e-10 68.6 59 50.8
VMungo0251G3757 Vigna mungo HOM05D000642 ORTHO05D000483 2.1e-10 68.6 59 50.8
MD00G1008600 Malus domestica HOM05D000642 ORTHO05D000483 2.8e-10 68.2 60 55.0
MD10G1275000 Malus domestica HOM05D000642 ORTHO05D000483 3.7e-10 67.8 66 53.0
CANSAT35G0085 Cannabis sativa HOM05D000642 ORTHO05D000483 4.8e-10 67.4 60 51.7
GSVIVG01021261001 Vitis vinifera HOM05D000642 ORTHO05D000483 6.2e-10 67.0 58 53.4
FAN21G1904 Fragaria x ananassa HOM05D000642 ORTHO05D000483 8.2e-10 66.6 54 57.4
FAN25G3857 Fragaria x ananassa HOM05D000642 ORTHO05D000483 8.2e-10 66.6 54 57.4
Gorai.009G160300 Gossypium raimondii HOM05D000642 ORTHO05D000483 8.2e-10 66.6 60 53.3
CAN.G411.48 Capsicum annuum HOM05D000642 ORTHO05D000483 1.1e-09 66.2 57 52.6
CiPaw.09G072900 Carya illinoinensis HOM05D000642 ORTHO05D000483 1.1e-09 66.2 67 49.3
FAN16G0689 Fragaria x ananassa HOM05D000642 ORTHO05D000483 1.1e-09 66.2 54 57.4
Lalb_Chr07g0186311 Lupinus albus HOM05D000642 ORTHO05D000483 1.1e-09 66.2 52 55.8
TAR626G1936 Trochodendron aralioides HOM05D000642 ORTHO05D000483 1.1e-09 66.2 58 53.4
PGSC0003DMG400028419 Solanum tuberosum HOM05D000642 ORTHO05D000483 1.4e-09 65.9 57 50.9
Glyma.08G118600 Glycine max HOM05D000642 ORTHO05D000483 1.8e-09 65.5 57 49.1
Gohir.A05G153200 Gossypium hirsutum HOM05D000642 ORTHO05D000483 1.8e-09 65.5 60 51.7
Gohir.D05G155800 Gossypium hirsutum HOM05D000642 ORTHO05D000483 1.8e-09 65.5 60 51.7
Solyc02g072140.1 Solanum lycopersicum HOM05D000642 ORTHO05D000483 1.8e-09 65.5 57 50.9
Sopen02g021100 Solanum pennellii HOM05D000642 ORTHO05D000483 1.8e-09 65.5 57 50.9
Ca_17895_v3 Cicer arietinum L. HOM05D000642 ORTHO05D000483 2.4e-09 65.1 69 42.0
Dinv32335 Davidia involucrata HOM05D000642 ORTHO05D000483 2.4e-09 65.1 61 52.5
FvH4_3g07250 Fragaria vesca HOM05D000642 ORTHO05D000483 3.1e-09 64.7 54 55.6
FAN11G1517 Fragaria x ananassa HOM05D000642 ORTHO05D000483 3.1e-09 64.7 54 55.6
Ah.09g233230 Amaranthus hybridus HOM05D000642 ORTHO05D000483 4.0e-09 64.3 57 49.1
Oeu061363.1 Olea europaea HOM05D000642 ORTHO05D000483 5.3e-09 63.9 55 52.7
CSS0026203 Camellia sinensis var. sinensis HOM05D000642 ORTHO05D000483 6.9e-09 63.5 57 52.6
COL.COLO4_31225 Corchorus olitorius HOM05D000642 ORTHO05D000483 6.9e-09 63.5 60 51.7
Ca_26982_v3 Cicer arietinum L. HOM05D000642 ORTHO05D000483 9.0e-09 63.2 59 45.8
Rhsim06G0209900 Rhododendron simsii HOM05D000642 ORTHO05D000483 9.0e-09 63.2 58 53.4
unitig_0.g2037 Utricularia gibba HOM05D000642 ORTHO05D000483 9.0e-09 63.2 62 46.8
Nitab4.5_0012630g0010 Nicotiana tabacum HOM05D000642 ORTHO05D000483 1.2e-08 62.8 57 49.1
Sc05g0006850 Simmondsia chinensis HOM05D000642 ORTHO05D000483 1.2e-08 62.8 64 42.2
MSTRG.7432 Avicennia marina HOM05D000642 ORTHO05D000483 1.5e-08 62.4 65 43.1
DCAR_021028 Daucus carota HOM05D000642 ORTHO05D000483 1.5e-08 62.4 60 46.7
Oeu040925.1 Olea europaea HOM05D000642 ORTHO05D000483 1.5e-08 62.4 64 43.8
Thecc.06G165000 Theobroma cacao HOM05D000642 ORTHO05D000483 1.5e-08 62.4 60 51.7
Nitab4.5_0000437g0020 Nicotiana tabacum HOM05D000642 ORTHO05D000483 2.0e-08 62.0 57 49.1
Oeu059256.1 Olea europaea HOM05D000642 ORTHO05D000483 2.0e-08 62.0 58 48.3
Atru.chr2.2069 Acer truncatum HOM05D000642 ORTHO05D000483 2.6e-08 61.6 57 47.4
Actinidia12587 Actinidia chinensis HOM05D000642 ORTHO05D000483 2.6e-08 61.6 58 51.7
Ah.14g086970 Amaranthus hybridus HOM05D000642 ORTHO05D000483 2.6e-08 61.6 57 42.1
Lj3g0017813 Lotus japonicus HOM05D000642 ORTHO05D000483 2.6e-08 61.6 58 44.8
Oeu060180.1 Olea europaea HOM05D000642 ORTHO05D000483 2.6e-08 61.6 65 44.6
Actinidia35603 Actinidia chinensis HOM05D000642 ORTHO05D000483 3.4e-08 61.2 65 44.6
AUR62019593 Chenopodium quinoa HOM05D000642 ORTHO05D000483 3.4e-08 61.2 64 45.3
ClCG01G023930 Citrullus lanatus HOM05D000642 ORTHO05D000483 3.4e-08 61.2 60 50.0
MELO3C016124.2 Cucumis melo HOM05D000642 ORTHO05D000483 3.4e-08 61.2 55 50.9
MSTRG.14238 Avicennia marina HOM05D000642 ORTHO05D000483 4.5e-08 60.8 50 58.0
Sabra04G0040900 Salix brachista HOM05D000642 ORTHO05D000483 4.5e-08 60.8 58 51.7
Migut.M00707 Erythranthe guttata HOM05D000642 ORTHO05D000483 5.8e-08 60.5 51 52.9
Gorai.010G241100 Gossypium raimondii HOM05D000642 ORTHO05D000483 5.8e-08 60.5 57 49.1
MBI07_g00457_MAGBIO Magnolia biondii HOM05D000642 ORTHO05D000483 5.8e-08 60.5 64 45.3
Phvul.005G081200 Phaseolus vulgaris HOM05D000642 ORTHO05D000483 5.8e-08 60.5 54 46.3
AUR62037561 Chenopodium quinoa HOM05D000642 ORTHO05D000483 7.6e-08 60.1 64 43.8
CsaV3_6G051070 Cucumis sativus L. HOM05D000642 ORTHO05D000483 7.6e-08 60.1 60 48.3
Lalb_Chr15g0086341 Lupinus albus HOM05D000642 ORTHO05D000483 7.6e-08 60.1 64 46.9
Rhsim13G0187600 Rhododendron simsii HOM05D000642 ORTHO05D000483 7.6e-08 60.1 57 49.1
CARHR028620 Cardamine hirsuta HOM05D000642 ORTHO05D000483 1.0e-07 59.7 69 44.9
Cpa.g.sc77.32 Carica papaya HOM05D000642 ORTHO05D000483 1.0e-07 59.7 59 45.8
Sabra11G0095900 Salix brachista HOM05D000642 ORTHO05D000483 1.0e-07 59.7 58 48.3
Sc03g0010590 Simmondsia chinensis HOM05D000642 ORTHO05D000483 1.0e-07 59.7 65 43.1
MSTRG.6681 Avicennia marina HOM05D000642 ORTHO05D000483 1.3e-07 59.3 63 39.7
AUR62039480 Chenopodium quinoa HOM05D000642 ORTHO05D000483 1.3e-07 59.3 57 47.4
Nitab4.5_0000788g0060 Nicotiana tabacum HOM05D000642 ORTHO05D000483 1.3e-07 59.3 57 47.4
SGA_v2.0_scaffold106G30601 Striga asiatica HOM05D000642 ORTHO05D000483 1.3e-07 59.3 58 46.6
Ah.04g164190 Amaranthus hybridus HOM05D000642 ORTHO05D000483 1.7e-07 58.9 64 40.6
EL10Ac4g08369 Beta vulgaris HOM05D000642 ORTHO05D000483 1.7e-07 58.9 58 44.8
Ca_03956_v3 Cicer arietinum L. HOM05D000642 ORTHO05D000483 1.7e-07 58.9 54 48.1
Cc02_g15640 Coffea canephora HOM05D000642 ORTHO05D000483 1.7e-07 58.9 58 44.8
Cc05_g10970 Coffea canephora HOM05D000642 ORTHO05D000483 1.7e-07 58.9 55 49.1
Sc16g0007680 Simmondsia chinensis HOM05D000642 ORTHO05D000483 1.7e-07 58.9 58 48.3
Duzib235G1286 Durio zibethinus HOM05D000642 ORTHO05D000483 2.2e-07 58.5 60 48.3
Glyma.13G268800 Glycine max HOM05D000642 ORTHO05D000483 2.2e-07 58.5 56 42.9
Nn6g34464 Nelumbo nucifera HOM05D000642 ORTHO05D000483 2.2e-07 58.5 57 45.6
Nitab4.5_0006663g0020 Nicotiana tabacum HOM05D000642 ORTHO05D000483 2.2e-07 58.5 56 48.2
Potri.011G071000 Populus trichocarpa HOM05D000642 ORTHO05D000483 2.2e-07 58.5 52 53.8
SalBow7G0975 Salvia bowleyana HOM05D000642 ORTHO05D000483 2.2e-07 58.5 52 51.9
GSVIVG01014172001 Vitis vinifera HOM05D000642 ORTHO05D000483 2.2e-07 58.5 57 45.6
arahy.Tifrunner.gnm1.ann1.6GI2WH Arachis hypogaea HOM05D000642 ORTHO05D000483 2.9e-07 58.2 57 45.6
MELO3C007196.2 Cucumis melo HOM05D000642 ORTHO05D000483 2.9e-07 58.2 60 46.7
CsaV3_4G008120 Cucumis sativus L. HOM05D000642 ORTHO05D000483 2.9e-07 58.2 55 47.3
Duzib192G0846 Durio zibethinus HOM05D000642 ORTHO05D000483 2.9e-07 58.2 60 48.3
Gohir.A06G199400 Gossypium hirsutum HOM05D000642 ORTHO05D000483 2.9e-07 58.2 57 47.4
Nitab4.5_0003166g0010 Nicotiana tabacum HOM05D000642 ORTHO05D000483 2.9e-07 58.2 63 44.4
THA.LOC104812644 Tarenaya hassleriana HOM05D000642 ORTHO05D000483 2.9e-07 58.2 65 47.7
AUR62041818 Chenopodium quinoa HOM05D000642 ORTHO05D000483 3.8e-07 57.8 57 45.6
ECA240G0366 Erigeron canadensis HOM05D000642 ORTHO05D000483 3.8e-07 57.8 64 43.8
DCAR_019603 Daucus carota HOM05D000642 ORTHO05D000483 4.9e-07 57.4 60 45.0
Gohir.D06G206700 Gossypium hirsutum HOM05D000642 ORTHO05D000483 4.9e-07 57.4 57 45.6
Hma1.2p1_0799F.1_g219920 Hydrangea macrophylla HOM05D000642 ORTHO05D000483 4.9e-07 57.4 63 41.3
Psat5g235600 Pisum sativum HOM05D000642 ORTHO05D000483 4.9e-07 57.4 55 47.3
Rhsim04G0027100 Rhododendron simsii HOM05D000642 ORTHO05D000483 4.9e-07 57.4 57 47.4
Sp1g25240 Schrenkiella parvula HOM05D000642 ORTHO05D000483 4.9e-07 57.4 70 47.1
VMungo1080G1679 Vigna mungo HOM05D000642 ORTHO05D000483 4.9e-07 57.4 55 41.8
SalBow1G6363 Salvia bowleyana HOM05D000642 ORTHO05D000483 6.5e-07 57.0 56 48.2
SalBow8G0168 Salvia bowleyana HOM05D000642 ORTHO05D000483 6.5e-07 57.0 56 48.2
TWI38G0219 Tripterygium wilfordii HOM05D000642 ORTHO05D000483 6.5e-07 57.0 62 41.9
TWI38G0656 Tripterygium wilfordii HOM05D000642 ORTHO05D000483 6.5e-07 57.0 57 47.4
ClCG07G010210 Citrullus lanatus HOM05D000642 ORTHO05D000483 8.4e-07 56.6 55 47.3
Lj8P147T28 Lonicera japonica HOM05D000642 ORTHO05D000483 8.4e-07 56.6 54 48.1
Peaxi162Scf00111g00148 Petunia axillaris HOM05D000642 ORTHO05D000483 8.4e-07 56.6 58 44.8
Sabra11G0058700 Salix brachista HOM05D000642 ORTHO05D000483 8.4e-07 56.6 52 51.9
Hund10482 Selenicereus undatus HOM05D000642 ORTHO05D000483 8.4e-07 56.6 58 43.1
arahy.Tifrunner.gnm1.ann1.EBD336 Arachis hypogaea HOM05D000642 ORTHO05D000483 1.1e-06 56.2 51 51.0
CAN.G375.24 Capsicum annuum HOM05D000642 ORTHO05D000483 1.1e-06 56.2 56 44.6
CiPaw.11G159000 Carya illinoinensis HOM05D000642 ORTHO05D000483 1.1e-06 56.2 58 41.4
vmacro09488 Vaccinium macrocarpon HOM05D000642 ORTHO05D000483 1.1e-06 56.2 52 51.9
Potri.004G061600 Populus trichocarpa HOM05D000642 ORTHO05D000483 1.4e-06 55.8 58 48.3
TPR.G16068 Trifolium pratense HOM05D000642 ORTHO05D000483 1.4e-06 55.8 55 45.5
BcaC01g00096 Brassica carinata HOM05D000642 ORTHO05D000483 1.9e-06 55.5 66 48.5
A08p25160 Brassica napus HOM05D000642 ORTHO05D000483 1.9e-06 55.5 66 48.5
C03p75720 Brassica napus HOM05D000642 ORTHO05D000483 1.9e-06 55.5 66 48.5
BolC3t19833H Brassica oleracea HOM05D000642 ORTHO05D000483 1.9e-06 55.5 66 48.5
BraA08t34471Z Brassica rapa HOM05D000642 ORTHO05D000483 1.9e-06 55.5 66 48.5
CsaV3_4G032980 Cucumis sativus L. HOM05D000642 ORTHO05D000483 1.9e-06 55.5 58 46.6
Oeu039878.1 Olea europaea HOM05D000642 ORTHO05D000483 1.9e-06 55.5 61 42.6
Potri.011G108000 Populus trichocarpa HOM05D000642 ORTHO05D000483 1.9e-06 55.5 58 44.8
THA.LOC104817236 Tarenaya hassleriana HOM05D000642 ORTHO05D000483 1.9e-06 55.5 56 42.9
Dinv15005 Davidia involucrata HOM05D000642 ORTHO05D000483 2.5e-06 55.1 58 44.8
Thhalv10007535m.g Eutrema salsugineum HOM05D000642 ORTHO05D000483 2.5e-06 55.1 71 43.7
Sabra11G0055600 Salix brachista HOM05D000642 ORTHO05D000483 2.5e-06 55.1 52 50.0
SalBow8G0554 Salvia bowleyana HOM05D000642 ORTHO05D000483 2.5e-06 55.1 52 50.0
MSTRG.13234 Avicennia marina HOM05D000642 ORTHO05D000483 3.2e-06 54.7 61 41.0
CANSAT35G1053 Cannabis sativa HOM05D000642 ORTHO05D000483 3.2e-06 54.7 57 42.1
MELO3C025651.2 Cucumis melo HOM05D000642 ORTHO05D000483 3.2e-06 54.7 58 44.8
Eucgr.F01250 Eucalyptus grandis HOM05D000642 ORTHO05D000483 3.2e-06 54.7 58 46.6
Eucgr.F03280 Eucalyptus grandis HOM05D000642 ORTHO05D000483 3.2e-06 54.7 49 46.9
HanXRQChr02g0050211 Helianthus annuus HOM05D000642 ORTHO05D000483 3.2e-06 54.7 48 50.0
TAR627G0321 Trochodendron aralioides HOM05D000642 ORTHO05D000483 3.2e-06 54.7 49 49.0
TAR629G2373 Trochodendron aralioides HOM05D000642 ORTHO05D000483 3.2e-06 54.7 54 46.3
Lsat_1_v5_gn_9_100960 Lactuca sativa HOM05D000642 ORTHO05D000483 4.2e-06 54.3 49 49.0
TWI39G1191 Tripterygium wilfordii HOM05D000642 ORTHO05D000483 4.2e-06 54.3 63 42.9
arahy.Tifrunner.gnm1.ann1.4V96S8 Arachis hypogaea HOM05D000642 ORTHO05D000483 5.5e-06 53.9 51 47.1
BcaB03g12153 Brassica carinata HOM05D000642 ORTHO05D000483 5.5e-06 53.9 66 47.0
CSS0021434 Camellia sinensis var. sinensis HOM05D000642 ORTHO05D000483 5.5e-06 53.9 58 44.8
CSS0033154 Camellia sinensis var. sinensis HOM05D000642 ORTHO05D000483 5.5e-06 53.9 58 44.8
Sed0022065 Sechium edule HOM05D000642 ORTHO05D000483 5.5e-06 53.9 65 40.0
PGSC0003DMG400015390 Solanum tuberosum HOM05D000642 ORTHO05D000483 5.5e-06 53.9 59 42.4
THA.LOC104827613 Tarenaya hassleriana HOM05D000642 ORTHO05D000483 5.5e-06 53.9 58 37.9
AL1G43090 Arabidopsis lyrata HOM05D000642 ORTHO05D000483 7.1e-06 53.5 72 37.5
Dinv18377 Davidia involucrata HOM05D000642 ORTHO05D000483 7.1e-06 53.5 58 43.1
Glyma.12G230800 Glycine max HOM05D000642 ORTHO05D000483 7.1e-06 53.5 55 41.8
Hma1.2p1_1929F.1_g307900 Hydrangea macrophylla HOM05D000642 ORTHO05D000483 7.1e-06 53.5 56 46.4
Lj1A1176T62 Lonicera japonica HOM05D000642 ORTHO05D000483 7.1e-06 53.5 56 42.9
Ah.06g185500 Amaranthus hybridus HOM05D000642 ORTHO05D000483 9.3e-06 53.1 64 37.5
Migut.M01007 Erythranthe guttata HOM05D000642 ORTHO05D000483 9.3e-06 53.1 60 45.0
HanXRQChr16g0519131 Helianthus annuus HOM05D000642 ORTHO05D000483 9.3e-06 53.1 48 47.9
Potri.002G145900 Populus trichocarpa HOM05D000642 ORTHO05D000483 9.3e-06 53.1 61 37.7
Prupe.4G160500 Prunus persica HOM05D000642 ORTHO05D000483 9.3e-06 53.1 58 39.7


User provided reference genes

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