Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.L02503 Eucalyptus grandis HOM05D003790 ORTHO05D004481 8.8e-78 293.5 144 100.0
Eucgr.H01065 Eucalyptus grandis HOM05D003790 ORTHO05D004481 2.9e-65 251.9 181 75.1
Eucgr.L01710 Eucalyptus grandis HOM05D003790 ORTHO05D004481 1.4e-59 233.0 168 73.8
Eucgr.H01068 Eucalyptus grandis HOM05D003790 ORTHO05D004481 1.1e-51 206.8 179 62.0
Eucgr.L01709 Eucalyptus grandis HOM05D003790 ORTHO05D004481 1.1e-51 206.8 179 63.7
Eucgr.H01059 Eucalyptus grandis HOM05D003790 ORTHO05D004481 4.1e-51 204.9 175 63.4
Eucgr.L01711 Eucalyptus grandis HOM05D003790 ORTHO05D004481 6.0e-42 174.5 139 66.2
Eucgr.H01062 Eucalyptus grandis HOM05D003790 ORTHO05D004481 3.1e-38 162.2 152 60.5
Eucgr.L02691 Eucalyptus grandis HOM05D003790 ORTHO05D004481 6.8e-38 161.0 178 54.5
Eucgr.E02370 Eucalyptus grandis HOM05D003790 ORTHO05D004481 4.4e-37 158.3 178 53.4
Duzib138G1652 Durio zibethinus HOM05D003790 ORTHO05D004481 4.7e-31 138.3 186 44.1
Thecc.01G310000 Theobroma cacao HOM05D003790 ORTHO05D004481 2.0e-29 132.9 183 44.8
Duzib133G0291 Durio zibethinus HOM05D003790 ORTHO05D004481 2.6e-29 132.5 180 45.0
Manes.01G225600 Manihot esculenta HOM05D003790 ORTHO05D004481 4.4e-29 131.7 157 50.3
THA.LOC104801296 Tarenaya hassleriana HOM05D003790 ORTHO05D004481 4.9e-28 128.3 162 46.3
Gorai.007G124700 Gossypium raimondii HOM05D003790 ORTHO05D004481 1.4e-27 126.7 177 43.5
Gohir.D11G116500 Gossypium hirsutum HOM05D003790 ORTHO05D004481 3.2e-27 125.6 178 43.3
Cfa005842 Carpinus fangiana HOM05D003790 ORTHO05D004481 2.1e-26 122.9 180 43.9
Rhsim01G0289200 Rhododendron simsii HOM05D003790 ORTHO05D004481 6.0e-26 121.3 172 44.8
Sed0026960 Sechium edule HOM05D003790 ORTHO05D004481 7.8e-26 120.9 160 41.9
Haze_05008 Corylus avellana HOM05D003790 ORTHO05D004481 1.0e-25 120.6 175 42.3
vmacro02415 Vaccinium macrocarpon HOM05D003790 ORTHO05D004481 1.0e-25 120.6 187 41.2
TWI36G1341 Tripterygium wilfordii HOM05D003790 ORTHO05D004481 2.3e-25 119.4 166 40.4
Cpa.g.sc18.4 Carica papaya HOM05D003790 ORTHO05D004481 3.0e-25 119.0 187 41.2
Potri.002G198800 Populus trichocarpa HOM05D003790 ORTHO05D004481 3.0e-25 119.0 179 40.8
PGR119G2441 Punica granatum HOM05D003790 ORTHO05D004481 3.0e-25 119.0 169 45.0
ClCG09G005270 Citrullus lanatus HOM05D003790 ORTHO05D004481 3.9e-25 118.6 167 41.9
Rhsim13G0006400 Rhododendron simsii HOM05D003790 ORTHO05D004481 3.9e-25 118.6 188 41.5
Eucgr.K03524 Eucalyptus grandis HOM05D003790 ORTHO05D004481 5.1e-25 118.2 184 44.0
VMungo0720G2360 Vigna mungo HOM05D003790 ORTHO05D004481 5.1e-25 118.2 175 44.0
Gohir.A12G126700 Gossypium hirsutum HOM05D003790 ORTHO05D004481 8.7e-25 117.5 183 42.6
Lalb_Chr02g0146651 Lupinus albus HOM05D003790 ORTHO05D004481 1.1e-24 117.1 174 43.7
Oeu008329.1 Olea europaea HOM05D003790 ORTHO05D004481 1.5e-24 116.7 165 43.6
Atru.chr5.1052 Acer truncatum HOM05D003790 ORTHO05D004481 1.9e-24 116.3 156 44.2
PGSC0003DMG400009002 Solanum tuberosum HOM05D003790 ORTHO05D004481 3.3e-24 115.5 169 43.2
Lalb_Chr06g0166611 Lupinus albus HOM05D003790 ORTHO05D004481 4.3e-24 115.2 170 43.5
Lj2P1202T13 Lonicera japonica HOM05D003790 ORTHO05D004481 5.6e-24 114.8 168 41.1
Ciclev10022416m.g Citrus clementina HOM05D003790 ORTHO05D004481 7.3e-24 114.4 186 39.8
BcaC07g42401 Brassica carinata HOM05D003790 ORTHO05D004481 9.6e-24 114.0 142 46.5
MELO3C015941.2 Cucumis melo HOM05D003790 ORTHO05D004481 1.2e-23 113.6 173 39.9
Gohir.A11G111300 Gossypium hirsutum HOM05D003790 ORTHO05D004481 1.2e-23 113.6 177 38.4
Sabra14G0091700 Salix brachista HOM05D003790 ORTHO05D004481 1.6e-23 113.2 182 42.3
Sed0014571 Sechium edule HOM05D003790 ORTHO05D004481 1.6e-23 113.2 159 42.1
CiPaw.07G114900 Carya illinoinensis HOM05D003790 ORTHO05D004481 2.1e-23 112.8 179 42.5
Ca_10301_v3 Cicer arietinum L. HOM05D003790 ORTHO05D004481 2.1e-23 112.8 162 42.6
CsaV3_7G029800 Cucumis sativus L. HOM05D003790 ORTHO05D004481 2.8e-23 112.5 183 38.8
Gorai.001G143000 Gossypium raimondii HOM05D003790 ORTHO05D004481 3.6e-23 112.1 187 38.0
Phvul.007G216200 Phaseolus vulgaris HOM05D003790 ORTHO05D004481 3.6e-23 112.1 185 40.5
Sopen01g031450 Solanum pennellii HOM05D003790 ORTHO05D004481 3.6e-23 112.1 151 43.0
Gorai.008G141400 Gossypium raimondii HOM05D003790 ORTHO05D004481 4.7e-23 111.7 177 41.2
PGR119G1194 Punica granatum HOM05D003790 ORTHO05D004481 6.2e-23 111.3 169 43.8
Glyma.10G015000 Glycine max HOM05D003790 ORTHO05D004481 1.1e-22 110.5 180 40.0
PGR119G2399 Punica granatum HOM05D003790 ORTHO05D004481 1.1e-22 110.5 155 49.0
Glyma.02G014300 Glycine max HOM05D003790 ORTHO05D004481 1.4e-22 110.2 174 40.8
Sp1g01670 Schrenkiella parvula HOM05D003790 ORTHO05D004481 1.4e-22 110.2 163 42.9
AL1G12020 Arabidopsis lyrata HOM05D003790 ORTHO05D004481 1.8e-22 109.8 161 42.9
AT5G38700 Arabidopsis thaliana HOM05D003790 ORTHO05D004481 1.8e-22 109.8 168 42.3
DCAR_018309 Daucus carota HOM05D003790 ORTHO05D004481 1.8e-22 109.8 172 40.7
Gohir.D07G131700 Gossypium hirsutum HOM05D003790 ORTHO05D004481 1.8e-22 109.8 187 37.4
Solyc01g079670.2 Solanum lycopersicum HOM05D003790 ORTHO05D004481 1.8e-22 109.8 144 44.4
PGSC0003DMG400037362 Solanum tuberosum HOM05D003790 ORTHO05D004481 1.8e-22 109.8 174 40.8
TPR.G7317 Trifolium pratense HOM05D003790 ORTHO05D004481 1.8e-22 109.8 175 38.9
FAN13G3073 Fragaria x ananassa HOM05D003790 ORTHO05D004481 2.4e-22 109.4 189 39.7
BolC5t28918H Brassica oleracea HOM05D003790 ORTHO05D004481 3.1e-22 109.0 162 44.4
Carub.0001s0174 Capsella rubella HOM05D003790 ORTHO05D004481 3.1e-22 109.0 163 42.9
Lsat_1_v5_gn_9_541 Lactuca sativa HOM05D003790 ORTHO05D004481 3.1e-22 109.0 168 39.9
A10p01380 Brassica napus HOM05D003790 ORTHO05D004481 4.0e-22 108.6 162 45.1
C05p01360 Brassica napus HOM05D003790 ORTHO05D004481 4.0e-22 108.6 162 44.4
BraA10t42414Z Brassica rapa HOM05D003790 ORTHO05D004481 4.0e-22 108.6 162 45.1
CiPaw.08G091700 Carya illinoinensis HOM05D003790 ORTHO05D004481 4.0e-22 108.6 182 39.6
Potri.014G123400 Populus trichocarpa HOM05D003790 ORTHO05D004481 4.0e-22 108.6 189 38.6
BcaB03g15798 Brassica carinata HOM05D003790 ORTHO05D004481 6.9e-22 107.8 161 41.6
BcaC07g42307 Brassica carinata HOM05D003790 ORTHO05D004481 6.9e-22 107.8 159 42.1
A09p68580 Brassica napus HOM05D003790 ORTHO05D004481 1.2e-21 107.1 159 43.4
BraA09t42201Z Brassica rapa HOM05D003790 ORTHO05D004481 1.2e-21 107.1 159 43.4
FAN04G0217 Fragaria x ananassa HOM05D003790 ORTHO05D004481 1.2e-21 107.1 189 38.6
Gohir.A07G127400 Gossypium hirsutum HOM05D003790 ORTHO05D004481 1.2e-21 107.1 186 37.1
Nn3g21628 Nelumbo nucifera HOM05D003790 ORTHO05D004481 1.2e-21 107.1 193 39.4
RcHm_v2.0_Chr7g0241911 Rosa chinensis HOM05D003790 ORTHO05D004481 1.2e-21 107.1 186 39.2
Dinv33098 Davidia involucrata HOM05D003790 ORTHO05D004481 2.0e-21 106.3 197 37.1
FvH4_5g39610 Fragaria vesca HOM05D003790 ORTHO05D004481 2.0e-21 106.3 193 38.3
FAN08G1995 Fragaria x ananassa HOM05D003790 ORTHO05D004481 2.0e-21 106.3 193 38.3
FAN18G0157 Fragaria x ananassa HOM05D003790 ORTHO05D004481 2.0e-21 106.3 193 38.3
C08p53190 Brassica napus HOM05D003790 ORTHO05D004481 2.6e-21 105.9 160 43.1
BolC8t52834H Brassica oleracea HOM05D003790 ORTHO05D004481 2.6e-21 105.9 160 43.1
Sp6g02070 Schrenkiella parvula HOM05D003790 ORTHO05D004481 2.6e-21 105.9 164 42.7
Thhalv10009571m.g Eutrema salsugineum HOM05D003790 ORTHO05D004481 3.4e-21 105.5 164 40.9
Medtr1g087710 Medicago truncatula HOM05D003790 ORTHO05D004481 3.4e-21 105.5 175 39.4
Nitab4.5_0010548g0010 Nicotiana tabacum HOM05D003790 ORTHO05D004481 3.4e-21 105.5 182 40.1
TAR362G0521 Trochodendron aralioides HOM05D003790 ORTHO05D004481 3.4e-21 105.5 171 41.5
CAN.G69.5 Capsicum annuum HOM05D003790 ORTHO05D004481 4.4e-21 105.1 184 39.1
TAR633G0094 Trochodendron aralioides HOM05D003790 ORTHO05D004481 4.4e-21 105.1 184 39.7
CARHR001970 Cardamine hirsuta HOM05D003790 ORTHO05D004481 5.8e-21 104.8 159 42.8
Dinv10067 Davidia involucrata HOM05D003790 ORTHO05D004481 5.8e-21 104.8 173 39.9
Actinidia25835 Actinidia chinensis HOM05D003270 ORTHO05D003662 9.9e-21 104.0 159 39.0
Thhalv10029373m.g Eutrema salsugineum HOM05D003790 ORTHO05D004481 9.9e-21 104.0 165 41.2
Lj1C20T16 Lonicera japonica HOM05D003790 ORTHO05D004481 1.3e-20 103.6 170 41.8
SalBow2G3380 Salvia bowleyana HOM05D003790 ORTHO05D004481 1.3e-20 103.6 154 42.9
TAR633G1354 Trochodendron aralioides HOM05D003790 ORTHO05D004481 1.3e-20 103.6 184 39.7
HanXRQChr01g0000871 Helianthus annuus HOM05D003790 ORTHO05D004481 1.7e-20 103.2 164 38.4
Sabra02G0159000 Salix brachista HOM05D003790 ORTHO05D004481 2.9e-20 102.4 193 36.8
Peaxi162Scf00001g00262 Petunia axillaris HOM05D003790 ORTHO05D004481 3.8e-20 102.1 201 35.3
Solyc01g079660.2 Solanum lycopersicum HOM05D003790 ORTHO05D004481 3.8e-20 102.1 178 38.2
HanXRQChr05g0137351 Helianthus annuus HOM05D003790 ORTHO05D004481 4.9e-20 101.7 166 38.6
Sopen01g031440 Solanum pennellii HOM05D003790 ORTHO05D004481 6.4e-20 101.3 177 37.9
AL6G50980 Arabidopsis lyrata HOM05D003790 ORTHO05D004481 8.4e-20 100.9 156 42.9
BraA03t12296Z Brassica rapa HOM05D003790 ORTHO05D004481 8.4e-20 100.9 168 39.9
Nitab4.5_0000116g0070 Nicotiana tabacum HOM05D003790 ORTHO05D004481 8.4e-20 100.9 186 38.7
Aqoxy2G02808 Aquilegia oxysepala HOM05D003790 ORTHO05D004481 1.4e-19 100.1 184 38.6
AT4G02170 Arabidopsis thaliana HOM05D003790 ORTHO05D004481 1.4e-19 100.1 156 41.7
Lj1C20T6 Lonicera japonica HOM05D003790 ORTHO05D004481 1.4e-19 100.1 172 42.4
Actinidia21012 Actinidia chinensis HOM05D003790 ORTHO05D004481 1.9e-19 99.8 159 39.6
BcaB01g02435 Brassica carinata HOM05D003790 ORTHO05D004481 1.9e-19 99.8 165 42.4
Carub.0006s3500 Capsella rubella HOM05D003790 ORTHO05D004481 2.4e-19 99.4 174 42.5
HanXRQChr05g0137341 Helianthus annuus HOM05D003790 ORTHO05D004481 2.4e-19 99.4 167 37.7
Peaxi162Scf00001g00254 Petunia axillaris HOM05D003790 ORTHO05D004481 5.4e-19 98.2 186 35.5
Peaxi162Scf00001g00263 Petunia axillaris HOM05D003790 ORTHO05D004481 5.4e-19 98.2 186 36.6
A03p31160 Brassica napus HOM05D003790 ORTHO05D004481 7.1e-19 97.8 167 39.5
Nitab4.5_0025993g0010 Nicotiana tabacum HOM05D003790 ORTHO05D004481 7.1e-19 97.8 187 38.0
Nitab4.5_0017359g0010 Nicotiana tabacum HOM05D003790 ORTHO05D004481 9.3e-19 97.4 187 36.4
BolC3t16086H Brassica oleracea HOM05D003790 ORTHO05D004481 1.2e-18 97.1 167 38.9
CANSAT25G2552 Cannabis sativa HOM05D003790 ORTHO05D004481 1.6e-18 96.7 182 36.8
Ah.11g049420 Amaranthus hybridus HOM05D003790 ORTHO05D004481 2.1e-18 96.3 165 38.2
QL12p028945 Quercus lobata HOM05D003790 ORTHO05D004481 2.7e-18 95.9 166 38.6
TWI75G0985 Tripterygium wilfordii HOM05D003790 ORTHO05D004481 2.7e-18 95.9 149 37.6
Aa31LG5G1840 Aethionema arabicum HOM05D003790 ORTHO05D004481 6.0e-18 94.7 166 40.4
Cc08_g11830 Coffea canephora HOM05D003790 ORTHO05D004481 6.0e-18 94.7 221 33.5
Sc17g0000570 Simmondsia chinensis HOM05D003790 ORTHO05D004481 6.0e-18 94.7 157 36.9
BcaC01g06770 Brassica carinata HOM05D003790 ORTHO05D004481 1.0e-17 94.0 167 38.3
BcaC01g06771 Brassica carinata HOM05D003790 ORTHO05D004481 1.0e-17 94.0 167 38.3
C03p38000 Brassica napus HOM05D003790 ORTHO05D004481 1.0e-17 94.0 167 38.3
ECA248G3170 Erigeron canadensis HOM05D003790 ORTHO05D004481 1.7e-17 93.2 165 35.8
COL.COLO4_23265 Corchorus olitorius HOM05D003790 ORTHO05D004481 2.3e-17 92.8 168 38.1
SGA_v2.0_scaffold198G41126 Striga asiatica HOM05D003790 ORTHO05D004481 2.3e-17 92.8 170 42.4
EL10As5g23497 Beta vulgaris HOM05D003790 ORTHO05D004481 3.9e-17 92.0 162 37.0
Eucgr.K03525 Eucalyptus grandis HOM05D003790 ORTHO05D004481 5.1e-17 91.7 160 43.8
Hma1.2p1_1302F.1_g274340 Hydrangea macrophylla HOM05D003790 ORTHO05D004481 5.1e-17 91.7 177 35.0
Prupe.8G269600 Prunus persica HOM05D003790 ORTHO05D004481 5.6e-16 88.2 178 38.8
AUR62011841 Chenopodium quinoa HOM05D003790 ORTHO05D004481 9.6e-16 87.4 128 41.4
Gohir.D12G130100 Gossypium hirsutum HOM05D003790 ORTHO05D004481 1.3e-15 87.0 141 40.4
PSO761G0583 Papaver somniferum HOM05D003790 ORTHO05D004481 2.1e-15 86.3 184 38.0
HPP92_025189 Vanilla planifolia HOM05D003790 ORTHO05D004481 2.8e-15 85.9 169 37.3
AUR62024684 Chenopodium quinoa HOM05D003790 ORTHO05D004481 3.6e-15 85.5 127 39.4
PSO210G7449 Papaver somniferum HOM05D003790 ORTHO05D004481 3.6e-15 85.5 179 37.4
Oeu008453.1 Olea europaea HOM05D003688 ORTHO05D004481 1.4e-14 83.6 138 40.6
Migut.D00101 Erythranthe guttata HOM05D003790 ORTHO05D004481 1.8e-14 83.2 151 36.4
Nitab4.5_0000116g0080 Nicotiana tabacum HOM05D003790 ORTHO05D004481 3.1e-14 82.4 166 37.3
Oeu005873.1 Olea europaea HOM05D003790 ORTHO05D004481 5.3e-14 81.6 164 35.4
Thhalv10029363m.g Eutrema salsugineum HOM05D003790 ORTHO05D004481 3.4e-13 79.0 124 43.5
Actinidia21418 Actinidia chinensis HOM05D003790 ORTHO05D004481 9.9e-13 77.4 96 45.8
Eucgr.L00541 Eucalyptus grandis HOM05D003790 ORTHO05D004481 9.9e-13 77.4 100 49.0
Eucgr.A02768 Eucalyptus grandis HOM05D003790 ORTHO05D004481 1.3e-12 77.0 56 71.4
Eucgr.F04057 Eucalyptus grandis HOM05D003790 ORTHO05D004481 2.2e-12 76.3 103 47.6
Thecc.01G102100 Theobroma cacao HOM05D003790 ORTHO05D004481 2.9e-12 75.9 163 35.6
HPP92_006897 Vanilla planifolia HOM05D003790 ORTHO05D004481 3.2e-11 72.4 126 42.1
Duzib147G1191 Durio zibethinus HOM05D003790 ORTHO05D004481 4.2e-11 72.0 167 35.3
Oeu005872.1 Olea europaea HOM05D003790 ORTHO05D004481 5.4e-11 71.6 109 37.6
ATR0706G232 Amborella trichopoda HOM05D003790 ORTHO05D004481 7.1e-11 71.2 170 32.4
Eucgr.F04083 Eucalyptus grandis HOM05D003790 ORTHO05D004481 9.3e-11 70.9 100 46.0
Duzib264G0610 Durio zibethinus HOM05D003790 ORTHO05D004481 2.7e-10 69.3 151 36.4
Eucgr.E02488 Eucalyptus grandis HOM05D003790 ORTHO05D004481 1.0e-09 67.4 99 46.5
CARHR250350 Cardamine hirsuta HOM05D003790 ORTHO05D004481 3.0e-09 65.9 136 36.8
MD11G1317200 Malus domestica HOM05D003790 ORTHO05D004481 3.9e-09 65.5 203 28.1
Os03g0302800 Oryza sativa ssp. japonica HOM05D003790 ORTHO05D004481 5.1e-09 65.1 197 29.4
Zm00001eb014210 Zea mays HOM05D003790 ORTHO05D004481 9.6e-08 60.8 210 28.6
CsaV3_4G001110 Cucumis sativus L. HOM05D003790 ORTHO05D044967 4.8e-07 58.5 150 32.7
MD03G1297400 Malus domestica HOM05D003790 ORTHO05D004481 4.8e-07 58.5 211 28.0
Sc17g0000580 Simmondsia chinensis HOM05D003790 ORTHO05D004481 4.8e-07 58.5 156 29.5
Zm00001eb396420 Zea mays HOM05D003790 ORTHO05D004481 2.4e-06 56.2 210 28.1
Nn2g14986 Nelumbo nucifera HOM05D003790 ORTHO05D004481 3.1e-06 55.8 40 57.5


User provided reference genes

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