Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.L02401 Eucalyptus grandis HOM05D016032 ORTHO05D007072 4.7e-167 591.3 330 100.0
Eucgr.L03677 Eucalyptus grandis HOM05D016032 ORTHO05D007072 3.0e-89 332.8 276 75.7
Eucgr.C00018 Eucalyptus grandis HOM05D016032 ORTHO05D007072 5.2e-49 199.1 295 45.8
Eucgr.C00020 Eucalyptus grandis HOM05D000005 ORTHO05D000012 6.6e-44 182.2 313 39.9
Eucgr.D02659 Eucalyptus grandis HOM05D016032 ORTHO05D007072 1.7e-23 114.4 239 37.7
Eucgr.C01486 Eucalyptus grandis HOM05D016032 ORTHO05D007072 5.6e-19 99.4 117 50.4
Eucgr.C01835 Eucalyptus grandis HOM05D016032 ORTHO05D007072 8.1e-18 95.5 160 38.8
Eucgr.C00572 Eucalyptus grandis HOM05D016032 ORTHO05D007072 3.2e-14 83.6 141 41.1
Eucgr.C00318 Eucalyptus grandis HOM05D000005 ORTHO05D007072 3.3e-11 73.6 272 27.2
RcHm_v2.0_Chr1g0314461 Rosa chinensis HOM05D000005 ORTHO05D000012 2.8e-10 70.5 114 43.9
Eucgr.D02418 Eucalyptus grandis HOM05D024781 ORTHO05D007072 6.2e-10 69.3 170 34.7
RcHm_v2.0_Chr1g0314371 Rosa chinensis HOM05D000005 ORTHO05D000012 1.1e-09 68.6 114 41.2
Eucgr.C02631 Eucalyptus grandis HOM05D012617 ORTHO05D007072 1.4e-09 68.2 132 35.6
Eucgr.C01700 Eucalyptus grandis HOM05D000005 ORTHO05D007072 6.8e-09 65.9 175 33.7
Eucgr.C01957 Eucalyptus grandis HOM05D012433 ORTHO05D017911 1.2e-08 65.1 107 37.4
VMungo0647G1386 Vigna mungo HOM05D000005 ORTHO05D012235 2.0e-08 64.3 103 38.8
Eucgr.C01654 Eucalyptus grandis HOM05D000005 ORTHO05D017911 2.6e-08 63.9 110 36.4
Eucgr.E03175 Eucalyptus grandis HOM05D000005 ORTHO05D017912 2.6e-08 63.9 96 42.7
PGR102G0684 Punica granatum HOM05D000005 ORTHO05D007072 2.6e-08 63.9 138 31.9
Eucgr.J01295 Eucalyptus grandis HOM05D000005 ORTHO05D000012 3.4e-08 63.5 118 35.6
Eucgr.L01871 Eucalyptus grandis HOM05D000005 ORTHO05D007072 3.4e-08 63.5 134 35.8
arahy.Tifrunner.gnm1.ann1.NDL7HJ Arachis hypogaea HOM05D000005 ORTHO05D000012 4.4e-08 63.2 104 39.4
RcHm_v2.0_Chr1g0349221 Rosa chinensis HOM05D000005 ORTHO05D000012 4.4e-08 63.2 115 33.9
CiPaw.15G118900 Carya illinoinensis HOM05D000005 ORTHO05D000012 5.8e-08 62.8 253 30.0
Atru.chr2.279 Acer truncatum HOM05D000005 ORTHO05D000012 7.6e-08 62.4 99 38.4
Eucgr.C00330 Eucalyptus grandis HOM05D000005 ORTHO05D007072 7.6e-08 62.4 257 27.6
Eucgr.L03184 Eucalyptus grandis HOM05D024781 ORTHO05D193950 7.6e-08 62.4 306 31.7
PGR102G0126 Punica granatum HOM05D000005 ORTHO05D007072 7.6e-08 62.4 137 32.1
RcHm_v2.0_Chr3g0484861 Rosa chinensis HOM05D000005 ORTHO05D000012 7.6e-08 62.4 114 43.0
AL8G13960 Arabidopsis lyrata HOM05D000005 ORTHO05D000012 9.9e-08 62.0 116 35.3
Eucgr.B00924 Eucalyptus grandis HOM05D000009 ORTHO05D000008 9.9e-08 62.0 93 43.0
Solyc11g011090.1 Solanum lycopersicum HOM05D000005 ORTHO05D000012 9.9e-08 62.0 110 40.0
Sopen11g005850 Solanum pennellii HOM05D000005 ORTHO05D000012 1.3e-07 61.6 110 40.0
Eucgr.G00367 Eucalyptus grandis HOM05D000005 ORTHO05D007072 1.7e-07 61.2 120 37.5
PGR044G1867 Punica granatum HOM05D000005 ORTHO05D000012 2.2e-07 60.8 252 27.8
RcHm_v2.0_Chr1g0314671 Rosa chinensis HOM05D000005 ORTHO05D000012 2.2e-07 60.8 111 41.4
AT1G56510 Arabidopsis thaliana HOM05D000005 ORTHO05D000449 2.9e-07 60.5 117 35.0
Carub.0002s0753 Capsella rubella HOM05D000005 ORTHO05D000449 2.9e-07 60.5 105 31.4
Ciclev10018644m.g Citrus clementina HOM05D000005 ORTHO05D000012 2.9e-07 60.5 111 36.0
Gohir.D13G202800 Gossypium hirsutum HOM05D000009 ORTHO05D000008 3.8e-07 60.1 114 37.7
Gorai.N013600 Gossypium raimondii HOM05D000009 ORTHO05D000008 3.8e-07 60.1 114 37.7
Ciclev10018693m.g Citrus clementina HOM05D000005 ORTHO05D000012 4.9e-07 59.7 109 39.4
Eucgr.C02655 Eucalyptus grandis HOM05D000005 ORTHO05D007072 4.9e-07 59.7 149 30.9
Eucgr.L03006 Eucalyptus grandis HOM05D012433 ORTHO05D017911 4.9e-07 59.7 179 30.2
PGR044G0200 Punica granatum HOM05D000005 ORTHO05D011459 4.9e-07 59.7 164 31.7
PGR142G2950 Punica granatum HOM05D000005 ORTHO05D000012 4.9e-07 59.7 115 36.5
PGR142G4245 Punica granatum HOM05D000005 ORTHO05D000012 4.9e-07 59.7 115 36.5
Duzib268G0232 Durio zibethinus HOM05D000005 ORTHO05D000012 6.4e-07 59.3 130 34.6
Eucgr.C00528 Eucalyptus grandis HOM05D016032 ORTHO05D007072 8.4e-07 58.9 47 55.3
Aa31LG9G7940 Aethionema arabicum HOM05D000005 ORTHO05D000012 1.1e-06 58.5 116 37.1
Carub.0002s0752 Capsella rubella HOM05D000005 ORTHO05D000449 1.1e-06 58.5 104 33.7
Gohir.A11G282513 Gossypium hirsutum HOM05D000005 ORTHO05D000012 1.1e-06 58.5 136 30.9
Lj4g0004538 Lotus japonicus HOM05D000005 ORTHO05D017065 1.1e-06 58.5 78 39.7
Phvul.001G134100 Phaseolus vulgaris HOM05D000009 ORTHO05D000008 1.1e-06 58.5 241 29.9
QL09p051838 Quercus lobata HOM05D000005 ORTHO05D000012 1.1e-06 58.5 127 33.1
CiPaw.15G121000 Carya illinoinensis HOM05D000005 ORTHO05D000012 1.4e-06 58.2 96 37.5
Gohir.D13G202600 Gossypium hirsutum HOM05D000009 ORTHO05D000008 1.4e-06 58.2 114 36.0
Gorai.013G231500 Gossypium raimondii HOM05D000009 ORTHO05D000008 1.4e-06 58.2 114 36.0
Gorai.013G232000 Gossypium raimondii HOM05D000009 ORTHO05D000008 1.4e-06 58.2 111 36.9
QL02p047554 Quercus lobata HOM05D000009 ORTHO05D000008 1.4e-06 58.2 100 40.0
AL8G13590 Arabidopsis lyrata HOM05D000005 ORTHO05D010446 1.9e-06 57.8 128 35.2
Eucgr.J01324 Eucalyptus grandis HOM05D000005 ORTHO05D000012 1.9e-06 57.8 125 33.6
MD05G1019700 Malus domestica HOM05D000005 ORTHO05D000012 1.9e-06 57.8 104 34.6
Eucgr.D00746 Eucalyptus grandis HOM05D012433 ORTHO05D017911 2.4e-06 57.4 135 30.4
Gohir.A11G284200 Gossypium hirsutum HOM05D000005 ORTHO05D000012 2.4e-06 57.4 106 34.0
PGR142G2421 Punica granatum HOM05D000005 ORTHO05D000012 2.4e-06 57.4 115 35.7
PGR142G3252 Punica granatum HOM05D000005 ORTHO05D000012 2.4e-06 57.4 248 26.6
AL2G11220 Arabidopsis lyrata HOM05D000005 ORTHO05D000449 3.2e-06 57.0 104 31.7
A02p29960 Brassica napus HOM05D000005 ORTHO05D000449 3.2e-06 57.0 105 33.3
BraA02t08018Z Brassica rapa HOM05D000005 ORTHO05D000449 3.2e-06 57.0 105 33.3
Carub.0008s0164 Capsella rubella HOM05D000005 ORTHO05D000449 3.2e-06 57.0 229 27.1
Ciclev10024102m.g Citrus clementina HOM05D000005 ORTHO05D000012 3.2e-06 57.0 106 38.7
Eucgr.C03970 Eucalyptus grandis HOM05D000005 ORTHO05D194797 3.2e-06 57.0 250 24.4
Eucgr.E03197 Eucalyptus grandis HOM05D000005 ORTHO05D007072 3.2e-06 57.0 177 30.5
Oeu059881.4 Olea europaea HOM05D000009 ORTHO05D000008 3.2e-06 57.0 109 38.5
PGR142G1159 Punica granatum HOM05D000005 ORTHO05D017912 3.2e-06 57.0 183 30.6
BraA02t05106Z Brassica rapa HOM05D000005 ORTHO05D000012 4.2e-06 56.6 77 39.0
Carub.0002s0109 Capsella rubella HOM05D000005 ORTHO05D000449 4.2e-06 56.6 195 26.2
Cc03_g15410 Coffea canephora HOM05D000009 ORTHO05D000008 4.2e-06 56.6 95 44.2
Dinv06997 Davidia involucrata HOM05D000009 ORTHO05D000008 4.2e-06 56.6 102 36.3
Eucgr.C01693 Eucalyptus grandis HOM05D000005 ORTHO05D007072 4.2e-06 56.6 146 32.9
FAN10G3445 Fragaria x ananassa HOM05D000005 ORTHO05D000012 4.2e-06 56.6 244 23.8
Gohir.A13G198000 Gossypium hirsutum HOM05D000009 ORTHO05D000008 4.2e-06 56.6 111 36.0
Gohir.D13G203101 Gossypium hirsutum HOM05D000009 ORTHO05D000008 4.2e-06 56.6 108 37.0
Gohir.D13G203501 Gossypium hirsutum HOM05D000009 ORTHO05D000008 4.2e-06 56.6 111 36.0
Gorai.013G232200 Gossypium raimondii HOM05D000009 ORTHO05D000008 4.2e-06 56.6 111 36.0
Medtr4g013375 Medicago truncatula HOM05D000005 ORTHO05D000012 4.2e-06 56.6 112 39.3
A02p01270 Brassica napus HOM05D000005 ORTHO05D000012 5.4e-06 56.2 75 41.3
CiPaw.15G119700 Carya illinoinensis HOM05D000005 ORTHO05D000012 5.4e-06 56.2 80 38.8
Cc03_g15450 Coffea canephora HOM05D000009 ORTHO05D000008 5.4e-06 56.2 93 43.0
Duzib128G1049 Durio zibethinus HOM05D000009 ORTHO05D000008 5.4e-06 56.2 100 40.0
Eucgr.C01952 Eucalyptus grandis HOM05D012433 ORTHO05D017911 5.4e-06 56.2 113 31.0
Eucgr.L01460 Eucalyptus grandis HOM05D000005 ORTHO05D007072 5.4e-06 56.2 135 34.8
Gorai.013G232100 Gossypium raimondii HOM05D000009 ORTHO05D000008 5.4e-06 56.2 114 36.0
HanXRQChr04g0095581 Helianthus annuus HOM05D000005 ORTHO05D000012 5.4e-06 56.2 128 36.7
Nn1g02032 Nelumbo nucifera HOM05D000005 ORTHO05D026553 5.4e-06 56.2 94 41.5
Potri.012G121725 Populus trichocarpa HOM05D000009 ORTHO05D000008 5.4e-06 56.2 92 40.2
Sp2g03800 Schrenkiella parvula HOM05D000005 ORTHO05D000449 5.4e-06 56.2 253 25.7
CARHR226320 Cardamine hirsuta HOM05D000005 ORTHO05D018471 7.1e-06 55.8 113 31.9
Cc03_g15430 Coffea canephora HOM05D000009 ORTHO05D000008 7.1e-06 55.8 93 43.0
Cc03_g15490 Coffea canephora HOM05D000009 ORTHO05D000008 7.1e-06 55.8 95 43.2
ECA236G2351 Erigeron canadensis HOM05D000092 ORTHO05D000042 7.1e-06 55.8 122 35.2
Eucgr.C02041 Eucalyptus grandis HOM05D000005 ORTHO05D007072 7.1e-06 55.8 135 30.4
Eucgr.C04271 Eucalyptus grandis HOM05D000005 ORTHO05D007072 7.1e-06 55.8 134 32.1
Eucgr.J01303 Eucalyptus grandis HOM05D000005 ORTHO05D000012 7.1e-06 55.8 125 32.8
Glyma.16G006400 Glycine max HOM05D000005 ORTHO05D000012 7.1e-06 55.8 135 34.1
Gohir.D13G202900 Gossypium hirsutum HOM05D000009 ORTHO05D000008 7.1e-06 55.8 120 35.8
MD07G1260700 Malus domestica HOM05D003506 ORTHO05D000012 7.1e-06 55.8 255 24.3
Medtr4g014340 Medicago truncatula HOM05D000005 ORTHO05D000012 7.1e-06 55.8 105 38.1
Solyc01g066020.3 Solanum lycopersicum HOM05D000005 ORTHO05D000012 7.1e-06 55.8 94 38.3
AT1G63730 Arabidopsis thaliana HOM05D000005 ORTHO05D000449 9.3e-06 55.5 108 34.3
BcaC03g13401 Brassica carinata HOM05D000005 ORTHO05D000012 9.3e-06 55.5 75 40.0
BcaC07g39357 Brassica carinata HOM05D000005 ORTHO05D000012 9.3e-06 55.5 145 31.7
C02p05480 Brassica napus HOM05D000005 ORTHO05D000012 9.3e-06 55.5 75 40.0
BolC2t06494H Brassica oleracea HOM05D000005 ORTHO05D000012 9.3e-06 55.5 75 40.0
CAN.G676.62 Capsicum annuum HOM05D000009 ORTHO05D000008 9.3e-06 55.5 103 39.8
Ciclev10018595m.g Citrus clementina HOM05D000005 ORTHO05D000012 9.3e-06 55.5 109 37.6
Eucgr.E02647 Eucalyptus grandis HOM05D000009 ORTHO05D007072 9.3e-06 55.5 102 36.3
Eucgr.J01298 Eucalyptus grandis HOM05D000005 ORTHO05D007072 9.3e-06 55.5 77 39.0
MD10G1128600 Malus domestica HOM05D000005 ORTHO05D000012 9.3e-06 55.5 139 32.4
Nn8g40999 Nelumbo nucifera HOM05D000005 ORTHO05D000012 9.3e-06 55.5 257 26.5
Phvul.002G323712 Phaseolus vulgaris HOM05D000005 ORTHO05D000012 9.3e-06 55.5 125 33.6
Potri.012G121851 Populus trichocarpa HOM05D000009 ORTHO05D000008 9.3e-06 55.5 95 40.0
PGR044G0444 Punica granatum HOM05D000005 ORTHO05D000012 9.3e-06 55.5 76 40.8
Sed0026698 Sechium edule HOM05D000005 ORTHO05D019022 9.3e-06 55.5 103 34.0


User provided reference genes

Program Settings