Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.L02369 Eucalyptus grandis HOM05D004025 ORTHO05D004929 0.0e+00 1368.2 774 100.0
Eucgr.I00214 Eucalyptus grandis HOM05D004025 ORTHO05D004929 0.0e+00 1207.2 821 83.8
PGR079G0002 Punica granatum HOM05D004025 ORTHO05D004929 3.1e-294 1015.0 821 70.0
PGR119G0653 Punica granatum HOM05D004025 ORTHO05D004929 3.1e-294 1015.0 821 70.0
CiPaw.04G083500 Carya illinoinensis HOM05D004025 ORTHO05D004929 1.0e-273 946.8 870 68.2
TWI31G0593 Tripterygium wilfordii HOM05D004025 ORTHO05D004929 5.3e-270 934.5 855 64.2
Potri.005G059000 Populus trichocarpa HOM05D004025 ORTHO05D004929 2.6e-269 932.2 875 67.5
RcHm_v2.0_Chr2g0120731 Rosa chinensis HOM05D004025 ORTHO05D004929 1.9e-267 926.0 850 63.9
Cpa.g.sc42.143 Carica papaya HOM05D004025 ORTHO05D004929 5.5e-267 924.5 869 62.7
MELO3C008054.2 Cucumis melo HOM05D004025 ORTHO05D004929 2.1e-266 922.5 859 62.4
MD17G1256600 Malus domestica HOM05D004025 ORTHO05D004929 6.1e-266 921.0 849 64.9
CsaV3_6G041660 Cucumis sativus L. HOM05D004025 ORTHO05D004929 1.1e-264 916.8 864 62.3
Thecc.01G130400 Theobroma cacao HOM05D004025 ORTHO05D004929 1.5e-264 916.4 894 61.0
MD09G1261800 Malus domestica HOM05D004025 ORTHO05D004929 9.7e-264 913.7 852 68.4
TWI75G0726 Tripterygium wilfordii HOM05D004025 ORTHO05D004929 9.7e-264 913.7 853 63.4
Manes.13G083201 Manihot esculenta HOM05D004025 ORTHO05D004929 2.8e-263 912.1 857 66.7
ClCG01G015430 Citrullus lanatus HOM05D004025 ORTHO05D004929 8.2e-263 910.6 864 61.7
Potri.007G109000 Populus trichocarpa HOM05D004025 ORTHO05D004929 1.8e-262 909.4 891 60.8
Gorai.008G094100 Gossypium raimondii HOM05D004025 ORTHO05D004929 2.4e-262 909.1 847 62.6
Ciclev10000085m.g Citrus clementina HOM05D004025 ORTHO05D004929 6.9e-262 907.5 895 65.4
Gohir.A12G090600 Gossypium hirsutum HOM05D004025 ORTHO05D004929 2.0e-261 906.0 847 62.3
Haze_25220 Corylus avellana HOM05D004025 ORTHO05D004929 1.6e-258 896.3 904 65.4
FAN28G0438 Fragaria x ananassa HOM05D004025 ORTHO05D004929 1.6e-258 896.3 856 62.4
Cfa002885 Carpinus fangiana HOM05D004025 ORTHO05D004929 2.7e-258 895.6 904 65.3
FAN19G0688 Fragaria x ananassa HOM05D004025 ORTHO05D004929 1.8e-257 892.9 856 62.1
FvH4_1g24240 Fragaria vesca HOM05D004025 ORTHO05D004929 3.0e-257 892.1 856 62.3
Sed0015970 Sechium edule HOM05D004025 ORTHO05D004929 5.1e-257 891.3 858 61.2
FAN26G1692 Fragaria x ananassa HOM05D004025 ORTHO05D004929 1.1e-256 890.2 856 62.1
THA.LOC104800034 Tarenaya hassleriana HOM05D004025 ORTHO05D004929 1.1e-256 890.2 883 60.5
TAR625G0443 Trochodendron aralioides HOM05D004025 ORTHO05D004929 2.5e-256 889.0 840 63.6
CANSAT01G1331 Cannabis sativa HOM05D004025 ORTHO05D004929 2.2e-255 885.9 868 61.6
FAN23G0558 Fragaria x ananassa HOM05D004025 ORTHO05D004929 1.1e-254 883.6 856 61.7
Glyma.04G213400 Glycine max HOM05D004025 ORTHO05D004929 1.2e-253 880.2 868 60.4
Aqoxy6G00339 Aquilegia oxysepala HOM05D004025 ORTHO05D004929 1.5e-253 879.8 876 58.2
FAN23G0951 Fragaria x ananassa HOM05D004025 ORTHO05D004929 1.5e-253 879.8 856 61.4
Dinv24344 Davidia involucrata HOM05D004025 ORTHO05D004929 2.6e-253 879.0 892 59.1
Manes.12G154400 Manihot esculenta HOM05D004025 ORTHO05D004929 2.6e-253 879.0 865 59.9
Glyma.06G152800 Glycine max HOM05D004025 ORTHO05D004929 5.9e-253 877.9 866 60.6
Sabra07G0089100 Salix brachista HOM05D004025 ORTHO05D004929 2.2e-252 875.9 946 57.1
CiPaw.03G122700 Carya illinoinensis HOM05D004025 ORTHO05D004929 3.8e-252 875.2 902 59.1
Lalb_Chr08g0238391 Lupinus albus HOM05D004025 ORTHO05D004929 1.4e-251 873.2 876 60.0
Lj1g0010712 Lotus japonicus HOM05D004025 ORTHO05D004929 2.5e-251 872.5 873 59.7
COL.COLO4_35712 Corchorus olitorius HOM05D004025 ORTHO05D004929 3.2e-251 872.1 860 61.2
Hund21821 Selenicereus undatus HOM05D004025 ORTHO05D004929 9.4e-251 870.5 872 59.2
Nn1g06239 Nelumbo nucifera HOM05D004025 ORTHO05D004929 1.2e-250 870.2 804 61.7
Sc09g0002360 Simmondsia chinensis HOM05D004025 ORTHO05D004929 1.2e-250 870.2 875 60.3
Glyma.08G156400 Glycine max HOM05D004025 ORTHO05D004929 1.6e-250 869.8 880 60.6
Phvul.002G271500 Phaseolus vulgaris HOM05D004025 ORTHO05D004929 1.6e-250 869.8 880 59.0
CSS0008777 Camellia sinensis var. sinensis HOM05D004025 ORTHO05D004929 1.0e-249 867.1 856 65.7
Glyma.05G191200 Glycine max HOM05D004025 ORTHO05D004929 3.9e-249 865.1 880 58.4
Lj4g0019129 Lotus japonicus HOM05D004025 ORTHO05D004929 3.9e-249 865.1 902 62.4
arahy.Tifrunner.gnm1.ann1.T69UQ6 Arachis hypogaea HOM05D004025 ORTHO05D004929 1.1e-248 863.6 872 59.4
Psat7g045720 Pisum sativum HOM05D004025 ORTHO05D004929 9.7e-248 860.5 869 61.2
Lalb_Chr12g0203161 Lupinus albus HOM05D004025 ORTHO05D004929 2.2e-247 859.4 883 58.2
arahy.Tifrunner.gnm1.ann1.P4XMCK Arachis hypogaea HOM05D004025 ORTHO05D004929 6.3e-247 857.8 877 59.0
Medtr8g093570 Medicago truncatula HOM05D004025 ORTHO05D004929 1.8e-246 856.3 867 59.1
Actinidia06630 Actinidia chinensis HOM05D004025 ORTHO05D004929 4.1e-246 855.1 920 57.8
Gohir.D12G084000 Gossypium hirsutum HOM05D004025 ORTHO05D004929 1.2e-245 853.6 839 60.5
Phvul.009G149800 Phaseolus vulgaris HOM05D004025 ORTHO05D004929 1.6e-245 853.2 872 58.7
Hma1.2p1_0476F.1_g160915 Hydrangea macrophylla HOM05D004025 ORTHO05D004929 4.5e-245 851.7 869 58.1
arahy.Tifrunner.gnm1.ann1.GI519K Arachis hypogaea HOM05D004025 ORTHO05D004929 2.2e-244 849.4 864 59.0
TPR.G37364 Trifolium pratense HOM05D004025 ORTHO05D004929 3.8e-244 848.6 832 60.0
Peaxi162Scf00589g00320 Petunia axillaris HOM05D004025 ORTHO05D004929 6.5e-244 847.8 903 57.6
Nn5g28584 Nelumbo nucifera HOM05D004025 ORTHO05D004929 1.2e-242 843.6 812 58.7
GSVIVG01026496001 Vitis vinifera HOM05D004025 ORTHO05D004929 3.6e-242 842.0 898 56.6
TPR.G34649 Trifolium pratense HOM05D004025 ORTHO05D004929 4.7e-242 841.6 877 58.0
CAN.G652.7 Capsicum annuum HOM05D004025 ORTHO05D004929 6.1e-242 841.3 895 57.0
AL8G41330 Arabidopsis lyrata HOM05D004025 ORTHO05D004929 1.4e-241 840.1 890 58.7
Aa31LG1G17850 Aethionema arabicum HOM05D004025 ORTHO05D004929 3.0e-241 839.0 888 57.5
Ah.06g190860 Amaranthus hybridus HOM05D004025 ORTHO05D004929 6.7e-241 837.8 873 58.4
AUR62006840 Chenopodium quinoa HOM05D004025 ORTHO05D004929 6.7e-241 837.8 876 58.0
CARHR277980 Cardamine hirsuta HOM05D004025 ORTHO05D004929 7.5e-240 834.3 893 59.6
Carub.0008s2485 Capsella rubella HOM05D004025 ORTHO05D004929 2.8e-239 832.4 890 57.0
AT5G64070 Arabidopsis thaliana HOM05D004025 ORTHO05D004929 3.7e-239 832.0 890 57.0
Thhalv10003553m.g Eutrema salsugineum HOM05D004025 ORTHO05D004929 1.1e-238 830.5 890 59.0
Sp2g27140 Schrenkiella parvula HOM05D004025 ORTHO05D004929 1.4e-238 830.1 890 58.2
AUR62000495 Chenopodium quinoa HOM05D004025 ORTHO05D004929 9.1e-238 827.4 875 59.7
Rhsim10G0135700 Rhododendron simsii HOM05D004025 ORTHO05D004929 2.7e-237 825.9 950 52.8
Solyc11g005910.2 Solanum lycopersicum HOM05D004025 ORTHO05D004929 8.5e-236 820.8 906 56.0
Migut.L00888 Erythranthe guttata HOM05D004025 ORTHO05D004929 9.4e-235 817.4 928 54.5
A06p30780 Brassica napus HOM05D004025 ORTHO05D004929 2.1e-234 816.2 887 58.3
BraA06t26020Z Brassica rapa HOM05D004025 ORTHO05D004929 1.8e-233 813.1 887 58.2
Ca_16958_v3 Cicer arietinum L. HOM05D004025 ORTHO05D004929 2.3e-233 812.8 774 62.0
BolC3t18483H Brassica oleracea HOM05D004025 ORTHO05D004929 3.0e-233 812.4 886 58.2
Ca_16939_v3 Cicer arietinum L. HOM05D004025 ORTHO05D004929 5.2e-233 811.6 773 62.1
Aa31LG3G17690 Aethionema arabicum HOM05D004025 ORTHO05D004929 8.8e-233 810.8 895 56.9
BcaC01g02663 Brassica carinata HOM05D004025 ORTHO05D004929 1.2e-232 810.4 888 57.9
Sopen11g001850 Solanum pennellii HOM05D004025 ORTHO05D004929 1.2e-232 810.4 904 55.9
C03p62200 Brassica napus HOM05D004025 ORTHO05D004929 1.5e-232 810.1 888 57.9
AT5G09350 Arabidopsis thaliana HOM05D004025 ORTHO05D004929 3.4e-232 808.9 888 55.4
Lsat_1_v5_gn_8_116820 Lactuca sativa HOM05D004025 ORTHO05D004929 4.4e-232 808.5 869 56.8
PSO675G2111 Papaver somniferum HOM05D004025 ORTHO05D004929 7.5e-232 807.7 908 54.4
EL10Ac4g09596 Beta vulgaris HOM05D004025 ORTHO05D004929 9.8e-232 807.4 974 54.6
SalBow1G5432 Salvia bowleyana HOM05D004025 ORTHO05D004929 1.3e-231 807.0 958 53.3
BraA02t09234Z Brassica rapa HOM05D004025 ORTHO05D004929 2.2e-231 806.2 888 56.6
Psat0s2140g0080 Pisum sativum HOM05D004025 ORTHO05D004929 4.8e-231 805.1 877 56.7
BcaB07g29718 Brassica carinata HOM05D004025 ORTHO05D004929 1.8e-230 803.1 891 57.7
AL6G19740 Arabidopsis lyrata HOM05D004025 ORTHO05D004929 4.1e-230 802.0 886 54.6
C02p63120 Brassica napus HOM05D004025 ORTHO05D004929 5.4e-230 801.6 889 58.0
BolC2t12384H Brassica oleracea HOM05D004025 ORTHO05D004929 7.0e-230 801.2 889 58.0
HanXRQChr09g0258681 Helianthus annuus HOM05D004025 ORTHO05D004929 7.0e-230 801.2 888 57.8
A02p43140 Brassica napus HOM05D004025 ORTHO05D004929 2.0e-229 799.7 890 58.8
SGA_v2.0_scaffold132G34527 Striga asiatica HOM05D004025 ORTHO05D004929 2.0e-229 799.7 924 54.7
Oeu047692.2 Olea europaea HOM05D004025 ORTHO05D004929 3.5e-229 798.9 933 55.6
PSO541G3336 Papaver somniferum HOM05D004025 ORTHO05D004929 7.7e-229 797.7 873 55.9
BcaC03g18241 Brassica carinata HOM05D004025 ORTHO05D004929 5.0e-228 795.0 889 57.7
Cc07_g18300 Coffea canephora HOM05D004025 ORTHO05D004929 6.5e-228 794.7 1038 50.6
VMungo0251G2658 Vigna mungo HOM05D004025 ORTHO05D004929 1.9e-227 793.1 996 51.2
DCAR_014341 Daucus carota HOM05D004025 ORTHO05D004929 4.7e-226 788.5 848 58.6
SHI11475 Sapria himalayana HOM05D004025 ORTHO05D004929 4.7e-226 788.5 852 56.1
BcaB02g09789 Brassica carinata HOM05D004025 ORTHO05D004929 3.0e-225 785.8 886 57.0
ATR0721G093 Amborella trichopoda HOM05D004025 ORTHO05D004929 5.2e-225 785.0 851 55.0
MSTRG.2662 Avicennia marina HOM05D004025 ORTHO05D004929 6.8e-225 784.6 960 52.8
Carub.0006s0789 Capsella rubella HOM05D004025 ORTHO05D004929 7.0e-222 774.6 873 53.7
Prupe.3G159200 Prunus persica HOM05D004025 ORTHO05D004929 1.6e-221 773.5 749 68.5
MBI06_g29665_MAGBIO Magnolia biondii HOM05D004025 ORTHO05D004929 8.6e-220 767.7 839 57.8
CDE06G1971 Ceratophyllum demersum HOM05D004025 ORTHO05D004929 4.1e-206 722.2 979 47.1
Lsat_1_v5_gn_5_42641 Lactuca sativa HOM05D004025 ORTHO05D004929 4.7e-202 708.8 794 53.4
TAR381G0182 Trochodendron aralioides HOM05D004025 ORTHO05D004929 1.9e-198 696.8 650 64.3
Actinidia20083 Actinidia chinensis HOM05D004025 ORTHO05D004929 3.5e-197 692.6 837 58.1
Lj4C845G3 Lonicera japonica HOM05D004025 ORTHO05D004929 7.8e-197 691.4 765 57.0
Zm00001eb168670 Zea mays HOM05D004025 ORTHO05D004929 4.1e-190 669.1 972 46.2
ECA232G2812 Erigeron canadensis HOM05D004025 ORTHO05D004929 7.8e-189 664.8 800 52.2
SEGI_16906 Sequoiadendron giganteum HOM05D004025 ORTHO05D004929 1.6e-186 657.1 840 48.5
Ca_17642_v3 Cicer arietinum L. HOM05D002604 ORTHO05D004929 1.9e-182 643.7 782 51.8
HPP92_019399 Vanilla planifolia HOM05D004025 ORTHO05D004929 1.1e-179 634.4 1110 41.3
unitig_52.g17244 Utricularia gibba HOM05D004025 ORTHO05D004929 2.3e-164 583.6 1048 40.8
SMO182G0011 Selaginella moellendorffii HOM05D004025 ORTHO05D004929 3.0e-156 556.6 788 43.5
Pp3c5_11330 Physcomitrium patens HOM05D004025 ORTHO05D004929 2.4e-153 547.0 987 37.5
SMO134G0131 Selaginella moellendorffii HOM05D004025 ORTHO05D004929 2.6e-152 543.5 865 41.5
Mapoly0091s0020 Marchantia polymorpha HOM05D004025 ORTHO05D004929 2.5e-150 537.0 1007 38.0
QL06p028827 Quercus lobata HOM05D004025 ORTHO05D004929 1.3e-146 524.6 387 71.1
CARHR204050 Cardamine hirsuta HOM05D004025 ORTHO05D004929 2.9e-143 513.5 648 51.5
Pp3c6_11330 Physcomitrium patens HOM05D004025 ORTHO05D004929 3.8e-143 513.1 977 36.8
Nitab4.5_0005674g0020 Nicotiana tabacum HOM05D004025 ORTHO05D004929 2.2e-138 497.3 373 70.8
AagrBONN_evm.TU.Sc2ySwM_228.921 Anthoceros agrestis HOM05D004025 ORTHO05D004929 3.8e-135 486.5 1004 35.9
VMungo1309G0837 Vigna mungo HOM05D004025 ORTHO05D004929 3.5e-128 463.4 563 54.2
BcaC01g02666 Brassica carinata HOM05D004025 ORTHO05D004929 2.9e-127 460.3 507 60.6
arahy.Tifrunner.gnm1.ann1.H0R63D Arachis hypogaea HOM05D004025 ORTHO05D004929 7.0e-113 412.5 296 74.3
Nitab4.5_0002667g0030 Nicotiana tabacum HOM05D004025 ORTHO05D004929 2.6e-107 394.0 301 69.1
QL06p028841 Quercus lobata HOM05D004025 ORTHO05D004929 2.0e-104 384.4 272 72.1
Nitab4.5_0005674g0010 Nicotiana tabacum HOM05D004025 ORTHO05D004929 1.3e-103 381.7 268 72.8
VMungo1309G1675 Vigna mungo HOM05D004025 ORTHO05D004929 8.6e-103 379.0 288 70.8
vmacro12810 Vaccinium macrocarpon HOM05D004025 ORTHO05D004929 2.5e-102 377.5 310 65.5
vmacro12812 Vaccinium macrocarpon HOM05D004025 ORTHO05D004929 4.3e-102 376.7 266 72.2
PGSC0003DMG401028661 Solanum tuberosum HOM05D004025 ORTHO05D004929 2.6e-99 367.5 266 71.4
Nitab4.5_0002667g0010 Nicotiana tabacum HOM05D004025 ORTHO05D004929 4.9e-98 363.2 268 70.1
Os11g0209700 Oryza sativa ssp. japonica HOM05D004025 ORTHO05D004929 6.6e-87 326.2 303 57.8
Ca_05857_v3 Cicer arietinum L. HOM05D004025 ORTHO05D004929 4.0e-84 317.0 250 67.6
Medtr3g096110 Medicago truncatula HOM05D004025 ORTHO05D004929 8.9e-76 289.3 216 69.4
CDE08G1435 Ceratophyllum demersum HOM05D004025 ORTHO05D004929 1.7e-71 275.0 262 59.9
CBR_g34503 Chara braunii HOM05D004025 ORTHO05D004929 1.2e-69 268.9 426 38.5
TAR381G0306 Trochodendron aralioides HOM05D004025 ORTHO05D004929 7.9e-48 196.4 119 84.0
Zm00001eb087390 Zea mays HOM05D004025 ORTHO05D004929 3.4e-43 181.0 170 56.5
Lj4A845G44 Lonicera japonica HOM05D004025 ORTHO05D004929 5.3e-36 157.1 92 84.8
arahy.Tifrunner.gnm1.ann1.EA5EP6 Arachis hypogaea HOM05D004025 ORTHO05D004929 1.3e-29 136.0 80 76.2
vmacro12811 Vaccinium macrocarpon HOM05D004025 ORTHO05D021029 7.9e-24 116.7 81 70.4
CDE08G0496 Ceratophyllum demersum HOM05D021779 ORTHO05D004929 1.2e-19 102.8 68 72.1
arahy.Tifrunner.gnm1.ann1.AFH0P4 Arachis hypogaea HOM05D004025 ORTHO05D004929 2.2e-18 98.6 60 71.7
Zm00001eb326430 Zea mays HOM05D004025 ORTHO05D021029 6.5e-18 97.1 82 58.5
Zm00001eb361560 Zea mays HOM05D004025 ORTHO05D021029 6.5e-18 97.1 82 58.5
arahy.Tifrunner.gnm1.ann1.YT22YU Arachis hypogaea HOM05D004025 ORTHO05D004929 1.4e-17 95.9 59 71.2
Cre06.g304650 Chlamydomonas reinhardtii HOM05D004025 ORTHO05D004929 1.4e-17 95.9 136 33.1
Zm00001eb027210 Zea mays HOM05D004025 ORTHO05D021029 9.4e-17 93.2 80 57.5
Zm00001eb377950 Zea mays HOM05D004025 ORTHO05D021029 9.4e-17 93.2 80 57.5
Zm00001eb114410 Zea mays HOM05D004025 ORTHO05D021029 8.8e-15 86.7 79 53.2
arahy.Tifrunner.gnm1.ann1.WA1G5B Arachis hypogaea HOM05D001872 ORTHO05D001859 2.4e-12 78.6 45 77.8
TPR.G7026 Trifolium pratense HOM05D004025 ORTHO05D004929 2.4e-12 78.6 58 65.5
arahy.Tifrunner.gnm1.ann1.9PS12T Arachis hypogaea HOM05D004025 ORTHO05D004929 1.0e-10 73.2 48 70.8
MCO08G061 Micromonas commoda HOM05D004025 ORTHO05D004929 2.7e-08 65.1 100 40.0
Cfa024895 Carpinus fangiana HOM05D000229 ORTHO05D004929 1.0e-07 63.2 201 28.9
arahy.Tifrunner.gnm1.ann1.2KJI71 Arachis hypogaea HOM05D003753 ORTHO05D011061 3.0e-07 61.6 34 79.4


User provided reference genes

Program Settings