Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.L02321 Eucalyptus grandis HOM05D006554 ORTHO05D008778 1.5e-36 155.6 76 100.0
Eucgr.C03321 Eucalyptus grandis HOM05D006554 ORTHO05D008778 6.4e-35 150.2 76 97.4
Eucgr.J02264 Eucalyptus grandis HOM05D006554 ORTHO05D008778 6.8e-29 130.2 64 96.9
Eucgr.F01485 Eucalyptus grandis HOM05D006554 ORTHO05D008778 2.6e-20 101.7 66 78.8
TAR629G0722 Trochodendron aralioides HOM05D006554 ORTHO05D008778 3.3e-15 84.7 63 68.3
Gohir.A05G353700 Gossypium hirsutum HOM05D006554 ORTHO05D008778 1.6e-14 82.4 63 65.1
Gohir.D04G059400 Gossypium hirsutum HOM05D006554 ORTHO05D008778 1.6e-14 82.4 63 65.1
Gorai.012G066100 Gossypium raimondii HOM05D006554 ORTHO05D008778 1.6e-14 82.4 63 65.1
Cfa007322 Carpinus fangiana HOM05D006554 ORTHO05D008778 3.6e-14 81.3 70 55.7
Lj1g0005465 Lotus japonicus HOM05D006554 ORTHO05D008778 4.7e-14 80.9 63 65.1
Dinv33413 Davidia involucrata HOM05D006554 ORTHO05D008778 6.2e-14 80.5 70 61.4
Haze_14775 Corylus avellana HOM05D006554 ORTHO05D008778 1.1e-13 79.7 70 54.3
Lalb_Chr22g0360641 Lupinus albus HOM05D006554 ORTHO05D008778 1.4e-13 79.3 63 63.5
CiPaw.04G030700 Carya illinoinensis HOM05D006554 ORTHO05D008778 1.8e-13 79.0 70 57.1
MELO3C014791.2 Cucumis melo HOM05D006554 ORTHO05D008778 1.8e-13 79.0 64 60.9
TPR.G1120 Trifolium pratense HOM05D006554 ORTHO05D008778 3.1e-13 78.2 63 63.5
Atru.chr6.2449 Acer truncatum HOM05D006554 ORTHO05D008778 4.0e-13 77.8 63 58.7
arahy.Tifrunner.gnm1.ann1.1L0SFZ Arachis hypogaea HOM05D006554 ORTHO05D008778 5.2e-13 77.4 63 58.7
Medtr7g032890 Medicago truncatula HOM05D006554 ORTHO05D008778 5.2e-13 77.4 63 63.5
GSVIVG01032362001 Vitis vinifera HOM05D006554 ORTHO05D008778 5.2e-13 77.4 70 58.6
Ciclev10015858m.g Citrus clementina HOM05D006554 ORTHO05D008778 8.9e-13 76.6 63 58.7
Duzib147G0564 Durio zibethinus HOM05D006554 ORTHO05D008778 8.9e-13 76.6 70 55.7
ClCG05G012880 Citrullus lanatus HOM05D006554 ORTHO05D008778 1.2e-12 76.3 63 57.1
VMungo1383G1633 Vigna mungo HOM05D006554 ORTHO05D008778 1.5e-12 75.9 63 57.1
Aqoxy5G03668 Aquilegia oxysepala HOM05D006554 ORTHO05D008778 2.0e-12 75.5 63 60.3
Nn4g22538 Nelumbo nucifera HOM05D006554 ORTHO05D008778 2.6e-12 75.1 63 54.0
CsaV3_3G027590 Cucumis sativus L. HOM05D006554 ORTHO05D008778 3.4e-12 74.7 64 57.8
Thecc.04G022100 Theobroma cacao HOM05D006554 ORTHO05D008778 3.4e-12 74.7 70 55.7
Glyma.19G079100 Glycine max HOM05D006554 ORTHO05D008778 4.4e-12 74.3 63 57.1
Migut.H00036 Erythranthe guttata HOM05D006554 ORTHO05D008778 7.6e-12 73.6 63 55.6
RcHm_v2.0_Chr2g0173581 Rosa chinensis HOM05D006554 ORTHO05D008778 1.7e-11 72.4 70 51.4
Glyma.16G067800 Glycine max HOM05D006554 ORTHO05D008778 2.9e-11 71.6 63 55.6
Manes.15G153200 Manihot esculenta HOM05D006554 ORTHO05D008778 4.9e-11 70.9 63 58.7
Sed0003688 Sechium edule HOM05D006554 ORTHO05D008778 6.4e-11 70.5 63 55.6
EL10Ac5g11640 Beta vulgaris HOM05D006554 ORTHO05D008778 8.4e-11 70.1 63 52.4
Phvul.008G147100 Phaseolus vulgaris HOM05D006554 ORTHO05D008778 8.4e-11 70.1 63 57.1
AUR62028440 Chenopodium quinoa HOM05D006554 ORTHO05D008778 1.1e-10 69.7 63 54.0
Cc07_g00120 Coffea canephora HOM05D006554 ORTHO05D008778 1.1e-10 69.7 63 57.1
MSTRG.3126 Avicennia marina HOM05D006554 ORTHO05D008778 1.9e-10 68.9 62 53.2
FAN14G5462 Fragaria x ananassa HOM05D006554 ORTHO05D008778 1.9e-10 68.9 70 50.0
Lsat_1_v5_gn_0_6020 Lactuca sativa HOM05D006554 ORTHO05D008778 1.9e-10 68.9 63 54.0
Potri.003G101100 Populus trichocarpa HOM05D006554 ORTHO05D008778 2.4e-10 68.6 62 54.8
QL02p073734 Quercus lobata HOM05D006554 ORTHO05D008778 2.4e-10 68.6 63 55.6
Sabra03G0068900 Salix brachista HOM05D006554 ORTHO05D008778 2.4e-10 68.6 62 54.8
Hma1.2p1_0279F.1_g111960 Hydrangea macrophylla HOM05D006554 ORTHO05D008778 3.2e-10 68.2 70 54.3
FvH4_6g52060 Fragaria vesca HOM05D006554 ORTHO05D008778 4.1e-10 67.8 70 50.0
FAN09G2431 Fragaria x ananassa HOM05D006554 ORTHO05D008778 4.1e-10 67.8 70 50.0
FAN14G0519 Fragaria x ananassa HOM05D006554 ORTHO05D008778 4.1e-10 67.8 70 50.0
Prupe.3G295900 Prunus persica HOM05D006554 ORTHO05D008778 4.1e-10 67.8 70 52.9
Ah.03g136830 Amaranthus hybridus HOM05D003292 ORTHO05D004237 5.4e-10 67.4 66 57.6
CANSAT64G1839 Cannabis sativa HOM05D006554 ORTHO05D008778 7.1e-10 67.0 63 55.6
Nitab4.5_0004496g0080 Nicotiana tabacum HOM05D006554 ORTHO05D008778 9.2e-10 66.6 63 50.8
CSS0049853 Camellia sinensis var. sinensis HOM05D006554 ORTHO05D008778 2.1e-09 65.5 64 54.7
MD09G1020300 Malus domestica HOM05D006554 ORTHO05D008778 2.1e-09 65.5 70 48.6
Oeu050455.2 Olea europaea HOM05D006554 ORTHO05D008778 2.1e-09 65.5 61 59.0
FAN05G3817 Fragaria x ananassa HOM05D006554 ORTHO05D008778 2.7e-09 65.1 70 48.6
Peaxi162Scf00080g01410 Petunia axillaris HOM05D006554 ORTHO05D008778 2.7e-09 65.1 63 50.8
Solyc02g067900.3 Solanum lycopersicum HOM05D006554 ORTHO05D008778 1.3e-08 62.8 63 47.6
Sopen02g017020 Solanum pennellii HOM05D006554 ORTHO05D008778 1.3e-08 62.8 63 47.6
PGSC0003DMG400006964 Solanum tuberosum HOM05D006554 ORTHO05D008778 1.3e-08 62.8 63 47.6
Thhalv10027933m.g Eutrema salsugineum HOM05D006554 ORTHO05D008778 2.3e-08 62.0 64 48.4
BolC4t27196H Brassica oleracea HOM05D006554 ORTHO05D008778 3.0e-08 61.6 64 46.9
ECA246G2886 Erigeron canadensis HOM05D006554 ORTHO05D008778 3.0e-08 61.6 63 49.2
Nitab4.5_0000040g0640 Nicotiana tabacum HOM05D006554 ORTHO05D008778 3.0e-08 61.6 62 51.6
PSO675G3751 Papaver somniferum HOM05D006554 ORTHO05D008778 3.9e-08 61.2 64 54.7
PSO541G1758 Papaver somniferum HOM05D006554 ORTHO05D008778 6.6e-08 60.5 64 54.7
FAN02G3632 Fragaria x ananassa HOM05D006554 ORTHO05D008778 1.1e-07 59.7 70 45.7
CSS0050446 Camellia sinensis var. sinensis HOM05D006554 ORTHO05D008778 1.5e-07 59.3 75 49.3
A04p13620 Brassica napus HOM05D004424 ORTHO05D005476 1.9e-07 58.9 65 47.7
BraA04t17023Z Brassica rapa HOM05D004424 ORTHO05D005476 1.9e-07 58.9 65 47.7
ATR0199G021 Amborella trichopoda HOM05D006554 ORTHO05D008778 2.5e-07 58.5 62 50.0
BolC4t26342H Brassica oleracea HOM05D006554 ORTHO05D008778 4.3e-07 57.8 64 45.3
Sp7g01270 Schrenkiella parvula HOM05D006554 ORTHO05D008778 5.6e-07 57.4 64 46.9
SGA_v2.0_scaffold135G34926 Striga asiatica HOM05D006554 ORTHO05D008778 5.6e-07 57.4 64 48.4
BcaB06g27536 Brassica carinata HOM05D006554 ORTHO05D008778 7.3e-07 57.0 64 46.9
C04p47410 Brassica napus HOM05D004424 ORTHO05D005476 7.3e-07 57.0 64 45.3
vmacro05891 Vaccinium macrocarpon HOM05D006554 ORTHO05D008778 7.3e-07 57.0 73 50.7
CARHR261360 Cardamine hirsuta HOM05D006554 ORTHO05D008778 9.6e-07 56.6 64 46.9
SEGI_16878 Sequoiadendron giganteum HOM05D000336 ORTHO05D002705 9.6e-07 56.6 62 45.2
CARHR148770 Cardamine hirsuta HOM05D006554 ORTHO05D008778 1.2e-06 56.2 65 49.2
PGR083G2647 Punica granatum HOM05D006554 ORTHO05D008778 1.6e-06 55.8 63 49.2
AL7G49210 Arabidopsis lyrata HOM05D006554 ORTHO05D008778 2.8e-06 55.1 65 46.2
Cpa.g.sc130.63 Carica papaya HOM05D006554 ORTHO05D008778 2.8e-06 55.1 46 50.0
AL5G16780 Arabidopsis lyrata HOM05D006554 ORTHO05D008778 4.7e-06 54.3 67 44.8


User provided reference genes

Program Settings