Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.L02238 Eucalyptus grandis HOM05D006839 ORTHO05D007872 2.5e-74 282.0 134 100.0
Eucgr.L02237 Eucalyptus grandis HOM05D006839 ORTHO05D007872 1.4e-53 213.0 134 75.4
Eucgr.H00898 Eucalyptus grandis HOM05D006839 ORTHO05D007872 2.3e-48 195.7 134 72.4
Eucgr.J01400 Eucalyptus grandis HOM05D006839 ORTHO05D007872 5.4e-29 131.3 124 50.0
Glyma.10G025800 Glycine max HOM05D006839 ORTHO05D007872 2.1e-25 119.4 135 45.2
Haze_04725 Corylus avellana HOM05D006839 ORTHO05D007872 3.6e-25 118.6 134 42.5
Lj1g0018770 Lotus japonicus HOM05D006839 ORTHO05D007872 4.7e-25 118.2 129 46.5
MBI19_g46647_MAGBIO Magnolia biondii HOM05D006839 ORTHO05D007872 3.1e-24 115.5 132 42.4
Oeu022880.1 Olea europaea HOM05D006839 ORTHO05D007872 4.0e-24 115.2 131 44.3
VMungo0720G2173 Vigna mungo HOM05D006839 ORTHO05D007872 5.2e-24 114.8 134 44.0
Glyma.02G148000 Glycine max HOM05D006839 ORTHO05D007872 8.9e-24 114.0 134 42.5
Potri.005G208400 Populus trichocarpa HOM05D006839 ORTHO05D007872 8.9e-24 114.0 115 47.0
MBI19_g14316_MAGBIO Magnolia biondii HOM05D006839 ORTHO05D007872 1.2e-23 113.6 132 41.7
Phvul.007G171000 Phaseolus vulgaris HOM05D006839 ORTHO05D007872 1.5e-23 113.2 134 43.3
Prupe.8G242500 Prunus persica HOM05D006839 ORTHO05D007872 2.6e-23 112.5 136 42.6
Aqoxy2G03292 Aquilegia oxysepala HOM05D006839 ORTHO05D007872 5.8e-23 111.3 134 40.3
Migut.D00285 Erythranthe guttata HOM05D006839 ORTHO05D007872 5.8e-23 111.3 125 44.8
Eucgr.A00826 Eucalyptus grandis HOM05D006839 ORTHO05D007872 5.8e-23 111.3 132 39.4
Eucgr.L00883 Eucalyptus grandis HOM05D006839 ORTHO05D007872 7.5e-23 110.9 94 58.5
Cpa.g.sc52.24 Carica papaya HOM05D006839 ORTHO05D007872 9.8e-23 110.5 128 42.2
ECA248G0593 Erigeron canadensis HOM05D006839 ORTHO05D007872 1.7e-22 109.8 128 43.0
RcHm_v2.0_Chr6g0291211 Rosa chinensis HOM05D006839 ORTHO05D007872 2.9e-22 109.0 115 45.2
Ciclev10023291m.g Citrus clementina HOM05D006839 ORTHO05D007872 4.9e-22 108.2 128 42.2
CsaV3_6G037040 Cucumis sativus L. HOM05D006839 ORTHO05D007872 4.9e-22 108.2 110 46.4
FvH4_2g23730 Fragaria vesca HOM05D006839 ORTHO05D007872 6.4e-22 107.8 115 44.3
MD11G1287200 Malus domestica HOM05D006839 ORTHO05D007872 6.4e-22 107.8 123 45.5
COL.COLO4_09110 Corchorus olitorius HOM05D006839 ORTHO05D007872 8.3e-22 107.5 128 42.2
Manes.05G075300 Manihot esculenta HOM05D006839 ORTHO05D007872 1.1e-21 107.1 134 43.3
Sed0018644 Sechium edule HOM05D006839 ORTHO05D007872 1.1e-21 107.1 136 42.6
Atru.chr5.1418 Acer truncatum HOM05D006839 ORTHO05D007872 1.9e-21 106.3 134 40.3
Nn1g02187 Nelumbo nucifera HOM05D006839 ORTHO05D007872 1.9e-21 106.3 128 42.2
Gorai.007G136000 Gossypium raimondii HOM05D006839 ORTHO05D007872 2.4e-21 105.9 122 45.1
SalBow6G6528 Salvia bowleyana HOM05D006839 ORTHO05D007872 2.4e-21 105.9 118 44.9
SalBow4G2140 Salvia bowleyana HOM05D006839 ORTHO05D007872 3.2e-21 105.5 124 42.7
MELO3C014411.2 Cucumis melo HOM05D006839 ORTHO05D007872 4.1e-21 105.1 110 44.5
FAN24G3533 Fragaria x ananassa HOM05D006839 ORTHO05D007872 4.1e-21 105.1 115 43.5
Gohir.D11G127300 Gossypium hirsutum HOM05D006839 ORTHO05D007872 4.1e-21 105.1 130 42.3
Gohir.D11G127350 Gossypium hirsutum HOM05D006839 ORTHO05D007872 4.1e-21 105.1 130 42.3
Duzib211G0653 Durio zibethinus HOM05D006839 ORTHO05D007872 7.1e-21 104.4 129 40.3
Gohir.A11G122100 Gossypium hirsutum HOM05D006839 ORTHO05D007872 7.1e-21 104.4 122 44.3
TAR636G2925 Trochodendron aralioides HOM05D006839 ORTHO05D007872 7.1e-21 104.4 135 41.5
Zm00001eb305770 Zea mays HOM05D006839 ORTHO05D007872 7.1e-21 104.4 101 50.5
CiPaw.08G104600 Carya illinoinensis HOM05D006839 ORTHO05D007872 2.1e-20 102.8 124 37.9
vmacro14927 Vaccinium macrocarpon HOM05D000265 ORTHO05D000161 2.1e-20 102.8 128 41.4
Lsat_1_v5_gn_5_190060 Lactuca sativa HOM05D006839 ORTHO05D007872 2.7e-20 102.4 128 43.0
VMungo1383G1584 Vigna mungo HOM05D006839 ORTHO05D007872 3.5e-20 102.1 135 41.5
PGR119G0017 Punica granatum HOM05D006839 ORTHO05D007872 7.8e-20 100.9 126 42.1
Glyma.19G155100 Glycine max HOM05D006839 ORTHO05D007872 1.0e-19 100.5 133 40.6
Phvul.001G150100 Phaseolus vulgaris HOM05D006839 ORTHO05D007872 1.0e-19 100.5 135 39.3
CSS0014698 Camellia sinensis var. sinensis HOM05D006839 ORTHO05D007872 1.7e-19 99.8 115 42.6
CSS0016717 Camellia sinensis var. sinensis HOM05D006839 ORTHO05D007872 1.7e-19 99.8 115 42.6
Cfa006129 Carpinus fangiana HOM05D006839 ORTHO05D007872 3.0e-19 99.0 116 40.5
CAN.G619.35 Capsicum annuum HOM05D006839 ORTHO05D007872 3.9e-19 98.6 100 47.0
Cc01_g19590 Coffea canephora HOM05D006839 ORTHO05D007872 3.9e-19 98.6 137 37.2
QL12p022082 Quercus lobata HOM05D006839 ORTHO05D007872 3.9e-19 98.6 125 36.8
Solyc09g065040.1 Solanum lycopersicum HOM05D006839 ORTHO05D007872 3.9e-19 98.6 130 40.0
CAN.G619.39 Capsicum annuum HOM05D006839 ORTHO05D007872 5.1e-19 98.2 120 39.2
Migut.N02163 Erythranthe guttata HOM05D006839 ORTHO05D007872 5.1e-19 98.2 125 40.0
Solyc04g026140.1 Solanum lycopersicum HOM05D006839 ORTHO05D007872 5.1e-19 98.2 109 44.0
Sopen09g026780 Solanum pennellii HOM05D006839 ORTHO05D007872 5.1e-19 98.2 130 40.0
PGSC0003DMG400045936 Solanum tuberosum HOM05D006839 ORTHO05D007872 8.6e-19 97.4 109 43.1
Nitab4.5_0001028g0040 Nicotiana tabacum HOM05D006839 ORTHO05D007872 1.1e-18 97.1 135 37.8
PGSC0003DMG400039700 Solanum tuberosum HOM05D006839 ORTHO05D007872 1.1e-18 97.1 130 40.0
PGSC0003DMG402026866 Solanum tuberosum HOM05D006839 ORTHO05D007872 1.1e-18 97.1 130 40.0
ATR0626G183 Amborella trichopoda HOM05D006839 ORTHO05D007872 1.5e-18 96.7 115 42.6
PGSC0003DMG400041475 Solanum tuberosum HOM05D006839 ORTHO05D007872 1.9e-18 96.3 124 40.3
TWI59G1109 Tripterygium wilfordii HOM05D006839 ORTHO05D007872 1.9e-18 96.3 128 39.8
Eucgr.K03376 Eucalyptus grandis HOM05D006839 ORTHO05D007872 4.3e-18 95.1 114 44.7
SalBow6G2151 Salvia bowleyana HOM05D006839 ORTHO05D007872 5.6e-18 94.7 112 41.1
CAN.G619.36 Capsicum annuum HOM05D006839 ORTHO05D007872 7.3e-18 94.4 120 38.3
Hma1.2p1_0257F.1_g103610 Hydrangea macrophylla HOM05D000265 ORTHO05D007872 7.3e-18 94.4 101 46.5
SalBow7G1292 Salvia bowleyana HOM05D006839 ORTHO05D007872 1.6e-17 93.2 124 40.3
SalBow6G4286 Salvia bowleyana HOM05D006839 ORTHO05D007872 2.1e-17 92.8 126 39.7
FAN27G2541 Fragaria x ananassa HOM05D006839 ORTHO05D007872 2.8e-17 92.4 108 41.7
PGR119G1259 Punica granatum HOM05D006839 ORTHO05D007872 2.8e-17 92.4 112 40.2
TWI14G1288 Tripterygium wilfordii HOM05D006839 ORTHO05D007872 2.8e-17 92.4 116 40.5
Actinidia24884 Actinidia chinensis HOM05D006839 ORTHO05D007872 4.7e-17 91.7 119 38.7
Sabra05G0158500 Salix brachista HOM05D006839 ORTHO05D007872 4.7e-17 91.7 106 40.6
FAN15G1162 Fragaria x ananassa HOM05D006839 ORTHO05D007872 6.2e-17 91.3 113 39.8
Medtr7g094760 Medicago truncatula HOM05D006839 ORTHO05D007872 6.2e-17 91.3 120 37.5
PGSC0003DMG400046937 Solanum tuberosum HOM05D006839 ORTHO05D007872 6.2e-17 91.3 114 39.5
HPP92_001336 Vanilla planifolia HOM05D006839 ORTHO05D007872 6.2e-17 91.3 108 40.7
Eucgr.A00847 Eucalyptus grandis HOM05D006839 ORTHO05D007872 1.1e-16 90.5 132 35.6
Thecc.01G280800 Theobroma cacao HOM05D006839 ORTHO05D007872 6.8e-16 87.8 116 42.2
FAN20G2906 Fragaria x ananassa HOM05D006839 ORTHO05D007872 8.9e-16 87.4 113 38.9
Nitab4.5_0007089g0020 Nicotiana tabacum HOM05D006839 ORTHO05D007872 1.5e-15 86.7 105 41.0
Glyma.03G152600 Glycine max HOM05D006839 ORTHO05D007872 7.6e-15 84.3 130 37.7
Nitab4.5_0000771g0180 Nicotiana tabacum HOM05D006839 ORTHO05D007872 7.6e-15 84.3 100 42.0
SEGI_06174 Sequoiadendron giganteum HOM05D006839 ORTHO05D007872 7.6e-15 84.3 132 36.4
PGR083G1544 Punica granatum HOM05D006839 ORTHO05D007872 9.9e-15 84.0 109 40.4
Migut.N02162 Erythranthe guttata HOM05D006839 ORTHO05D007872 1.3e-14 83.6 122 34.4
Peaxi162Scf00681g00001 Petunia axillaris HOM05D006839 ORTHO05D007872 2.9e-14 82.4 111 37.8
Nitab4.5_0006691g0050 Nicotiana tabacum HOM05D006839 ORTHO05D007872 4.9e-14 81.6 100 40.0
Nitab4.5_0009973g0050 Nicotiana tabacum HOM05D006839 ORTHO05D007872 8.4e-14 80.9 102 39.2
Eucgr.H01539 Eucalyptus grandis HOM05D006839 ORTHO05D007872 2.4e-13 79.3 136 35.3
SalBow6G0334 Salvia bowleyana HOM05D006839 ORTHO05D007872 3.2e-13 79.0 111 35.1
Nitab4.5_0006691g0070 Nicotiana tabacum HOM05D006839 ORTHO05D007872 4.1e-13 78.6 102 38.2
Eucgr.A00843 Eucalyptus grandis HOM05D006839 ORTHO05D007872 7.1e-13 77.8 112 36.6
Peaxi162Scf00681g00007 Petunia axillaris HOM05D006839 ORTHO05D007872 7.1e-13 77.8 122 35.2
SalBow6G5378 Salvia bowleyana HOM05D006839 ORTHO05D007872 1.2e-12 77.0 109 33.9
Nitab4.5_0000771g0190 Nicotiana tabacum HOM05D006839 ORTHO05D007872 4.6e-12 75.1 92 40.2
SalBow6G6538 Salvia bowleyana HOM05D006839 ORTHO05D007872 6.0e-12 74.7 125 34.4
Peaxi162Scf00681g00002 Petunia axillaris HOM05D006839 ORTHO05D007872 1.3e-11 73.6 111 37.8
PGR142G4476 Punica granatum HOM05D006839 ORTHO05D007872 1.3e-11 73.6 132 37.1
AagrBONN_evm.TU.Sc2ySwM_344.1663 Anthoceros agrestis HOM05D006839 ORTHO05D007872 1.9e-10 69.7 112 34.8
Rhsim01G0275200 Rhododendron simsii HOM05D006839 ORTHO05D007872 4.3e-10 68.6 92 37.0
SEGI_14968 Sequoiadendron giganteum HOM05D000022 ORTHO05D000306 1.2e-09 67.0 120 34.2
PGR084G0009 Punica granatum HOM05D006839 ORTHO05D007872 1.6e-09 66.6 112 33.0
PGR142G2474 Punica granatum HOM05D006839 ORTHO05D007872 1.6e-09 66.6 112 33.0
TWI73G0617 Tripterygium wilfordii HOM05D006839 ORTHO05D007872 2.8e-09 65.9 120 33.3
AagrBONN_evm.TU.Sc2ySwM_344.1627 Anthoceros agrestis HOM05D032606 ORTHO05D007872 1.4e-08 63.5 101 36.6
PGR031G1999 Punica granatum HOM05D006839 ORTHO05D007872 2.4e-08 62.8 100 31.0
Solyc01g091040.3 Solanum lycopersicum HOM05D000655 ORTHO05D001166 5.2e-08 61.6 102 37.3
PGSC0003DMG400029246 Solanum tuberosum HOM05D006839 ORTHO05D007872 5.2e-08 61.6 76 40.8
GSVIVG01027651001 Vitis vinifera HOM05D000655 ORTHO05D001166 8.9e-08 60.8 102 36.3
PGR031G2486 Punica granatum HOM05D023640 ORTHO05D019592 1.5e-07 60.1 117 35.0
Nitab4.5_0009973g0030 Nicotiana tabacum HOM05D006839 ORTHO05D007872 2.0e-07 59.7 77 39.0
PGR083G0613 Punica granatum HOM05D006839 ORTHO05D007872 2.0e-07 59.7 71 42.3
Aqoxy2G03768 Aquilegia oxysepala HOM05D000655 ORTHO05D001166 7.6e-07 57.8 98 31.6
MSTRG.2623 Avicennia marina HOM05D000655 ORTHO05D001166 7.6e-07 57.8 98 30.6
Peaxi162Scf00013g02613 Petunia axillaris HOM05D000655 ORTHO05D001166 7.6e-07 57.8 102 33.3
CANSAT56G0507 Cannabis sativa HOM05D000655 ORTHO05D001166 9.9e-07 57.4 102 35.3
CANSAT56G3636 Cannabis sativa HOM05D000655 ORTHO05D001166 9.9e-07 57.4 102 35.3
AUR62012589 Chenopodium quinoa HOM05D000022 ORTHO05D000071 9.9e-07 57.4 125 31.2
Eucgr.J01605 Eucalyptus grandis HOM05D000655 ORTHO05D001166 1.3e-06 57.0 98 31.6
FvH4_1g30260 Fragaria vesca HOM05D000655 ORTHO05D001166 1.3e-06 57.0 98 30.6
FAN19G2469 Fragaria x ananassa HOM05D000655 ORTHO05D001166 1.3e-06 57.0 98 30.6
FAN26G1602 Fragaria x ananassa HOM05D000655 ORTHO05D001166 1.3e-06 57.0 125 28.0
Gohir.A08G036000 Gossypium hirsutum HOM05D000655 ORTHO05D001166 1.3e-06 57.0 128 28.9
FAN06G0377 Fragaria x ananassa HOM05D000655 ORTHO05D001166 1.7e-06 56.6 139 30.9
FAN06G3734 Fragaria x ananassa HOM05D000655 ORTHO05D001166 1.7e-06 56.6 139 30.9
MD09G1271000 Malus domestica HOM05D000655 ORTHO05D001166 1.7e-06 56.6 135 27.4
RcHm_v2.0_Chr1g0349511 Rosa chinensis HOM05D000655 ORTHO05D001166 1.7e-06 56.6 131 32.1
AagrBONN_evm.TU.Sc2ySwM_344.366 Anthoceros agrestis HOM05D006839 ORTHO05D007872 2.2e-06 56.2 98 34.7
MD02G1208100 Malus domestica HOM05D000655 ORTHO05D001166 2.2e-06 56.2 101 33.7
SalBow3G1337 Salvia bowleyana HOM05D000655 ORTHO05D001166 2.2e-06 56.2 98 28.6
CAN.G911.1 Capsicum annuum HOM05D000655 ORTHO05D001166 2.9e-06 55.8 102 37.3
Haze_02656 Corylus avellana HOM05D000655 ORTHO05D001166 2.9e-06 55.8 127 30.7
Gohir.D08G046700 Gossypium hirsutum HOM05D000655 ORTHO05D001166 2.9e-06 55.8 128 28.9
Gorai.004G045900 Gossypium raimondii HOM05D000655 ORTHO05D001166 2.9e-06 55.8 128 28.9
Manes.01G267800 Manihot esculenta HOM05D000655 ORTHO05D001166 2.9e-06 55.8 62 45.2
RcHm_v2.0_Chr3g0491141 Rosa chinensis HOM05D000655 ORTHO05D001166 2.9e-06 55.8 98 29.6
SEGI_04823 Sequoiadendron giganteum HOM05D000002 ORTHO05D000001 2.9e-06 55.8 54 48.1
SEGI_20095 Sequoiadendron giganteum HOM05D000022 ORTHO05D002153 2.9e-06 55.8 54 48.1
Solyc11g011000.2 Solanum lycopersicum HOM05D000655 ORTHO05D001166 2.9e-06 55.8 98 30.6
Sopen11g005760 Solanum pennellii HOM05D000655 ORTHO05D001166 2.9e-06 55.8 98 30.6
TAR388G0002 Trochodendron aralioides HOM05D000655 ORTHO05D001166 2.9e-06 55.8 102 34.3
TAR629G0172 Trochodendron aralioides HOM05D000655 ORTHO05D001166 2.9e-06 55.8 102 34.3
vmacro13428 Vaccinium macrocarpon HOM05D000655 ORTHO05D001166 2.9e-06 55.8 104 34.6
ClCG06G000550 Citrullus lanatus HOM05D000655 ORTHO05D001166 3.8e-06 55.5 104 32.7
MELO3C007360.2 Cucumis melo HOM05D000022 ORTHO05D000071 3.8e-06 55.5 101 31.7
CsaV3_6G049350 Cucumis sativus L. HOM05D000022 ORTHO05D000071 3.8e-06 55.5 101 31.7
PSO017G3691 Papaver somniferum HOM05D000655 ORTHO05D001166 3.8e-06 55.5 125 27.2
QL04p039551 Quercus lobata HOM05D000655 ORTHO05D001166 3.8e-06 55.5 97 33.0
SEGI_38448 Sequoiadendron giganteum HOM05D000022 ORTHO05D002153 3.8e-06 55.5 54 48.1
Atru.chr1.1992 Acer truncatum HOM05D000655 ORTHO05D001166 4.9e-06 55.1 98 29.6
MD07G1117900 Malus domestica HOM05D000655 ORTHO05D001166 4.9e-06 55.1 101 32.7
Peaxi162Scf00562g00096 Petunia axillaris HOM05D000655 ORTHO05D001166 4.9e-06 55.1 100 28.0
Thecc.04G054600 Theobroma cacao HOM05D000655 ORTHO05D001166 4.9e-06 55.1 131 26.7
BcaC07g40591 Brassica carinata HOM05D000655 ORTHO05D001166 6.4e-06 54.7 97 33.0
BcaC08g46519 Brassica carinata HOM05D000655 ORTHO05D001166 6.4e-06 54.7 104 32.7
BolC8t51157H Brassica oleracea HOM05D000655 ORTHO05D001166 6.4e-06 54.7 97 33.0
FAN03G0343 Fragaria x ananassa HOM05D000655 ORTHO05D001166 6.4e-06 54.7 101 32.7
FAN10G1239 Fragaria x ananassa HOM05D000655 ORTHO05D001166 6.4e-06 54.7 101 32.7
FAN10G1320 Fragaria x ananassa HOM05D000655 ORTHO05D001166 6.4e-06 54.7 101 32.7
MBI18_g31928_MAGBIO Magnolia biondii HOM05D000022 ORTHO05D015633 6.4e-06 54.7 102 31.4
QL93p0170_0130 Quercus lobata HOM05D000655 ORTHO05D001166 6.4e-06 54.7 97 33.0
SEGI_14740 Sequoiadendron giganteum HOM05D000022 ORTHO05D002153 6.4e-06 54.7 111 29.7
Ah.05g174770 Amaranthus hybridus HOM05D000655 ORTHO05D001166 8.4e-06 54.3 124 28.2
Eucgr.E03718 Eucalyptus grandis HOM05D000022 ORTHO05D000071 8.4e-06 54.3 102 33.3
FAN01G0446 Fragaria x ananassa HOM05D000655 ORTHO05D001166 8.4e-06 54.3 101 32.7
HanXRQChr16g0520691 Helianthus annuus HOM05D000655 ORTHO05D001166 8.4e-06 54.3 106 33.0
Hma1.2p1_1583F.1_g292010 Hydrangea macrophylla HOM05D000655 ORTHO05D001166 8.4e-06 54.3 98 29.6
Nitab4.5_0005102g0100 Nicotiana tabacum HOM05D000655 ORTHO05D001166 8.4e-06 54.3 98 28.6
PSO478G3313 Papaver somniferum HOM05D000655 ORTHO05D001166 8.4e-06 54.3 98 29.6
PGR004G0841 Punica granatum HOM05D000655 ORTHO05D001166 8.4e-06 54.3 56 42.9
Sopen05g029650 Solanum pennellii HOM05D000655 ORTHO05D001166 8.4e-06 54.3 98 29.6
PGSC0003DMG400015664 Solanum tuberosum HOM05D000655 ORTHO05D001166 8.4e-06 54.3 98 29.6


User provided reference genes

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