Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.L02178 Eucalyptus grandis HOM05D002733 ORTHO05D003856 4.5e-115 417.9 208 100.0
Eucgr.C01014 Eucalyptus grandis HOM05D002733 ORTHO05D003856 5.8e-30 135.2 173 42.2
Cfa009897 Carpinus fangiana HOM05D002733 ORTHO05D003856 5.4e-28 128.6 192 39.6
Haze_23259 Corylus avellana HOM05D002733 ORTHO05D003856 5.4e-28 128.6 199 38.7
Potri.001G397100 Populus trichocarpa HOM05D002733 ORTHO05D003856 1.0e-26 124.4 173 39.3
Thecc.07G171000 Theobroma cacao HOM05D002733 ORTHO05D003856 1.1e-25 120.9 163 37.4
Sabra16G0260100 Salix brachista HOM05D002733 ORTHO05D003856 1.9e-25 120.2 126 44.4
FAN19G2118 Fragaria x ananassa HOM05D002733 ORTHO05D003856 1.2e-24 117.5 135 43.0
Duzib213G1035 Durio zibethinus HOM05D002733 ORTHO05D003856 1.6e-24 117.1 134 44.0
Manes.03G176200 Manihot esculenta HOM05D002733 ORTHO05D003856 1.6e-24 117.1 127 45.7
RcHm_v2.0_Chr2g0120751 Rosa chinensis HOM05D002733 ORTHO05D003856 4.7e-24 115.5 125 42.4
Manes.03G176000 Manihot esculenta HOM05D002733 ORTHO05D003856 6.2e-24 115.2 127 46.5
FvH4_1g24261 Fragaria vesca HOM05D002733 ORTHO05D003856 1.1e-23 114.4 153 37.9
FAN26G1179 Fragaria x ananassa HOM05D002733 ORTHO05D003856 1.1e-23 114.4 153 37.9
RcHm_v2.0_Chr7g0192641 Rosa chinensis HOM05D002733 ORTHO05D003856 1.1e-23 114.4 125 44.8
QL02p042807 Quercus lobata HOM05D002733 ORTHO05D003856 3.1e-23 112.8 128 42.2
FAN28G1642 Fragaria x ananassa HOM05D000949 ORTHO05D001276 4.0e-23 112.5 125 41.6
FvH4_1g16231 Fragaria vesca HOM05D002733 ORTHO05D003856 9.0e-23 111.3 139 41.7
FAN23G1485 Fragaria x ananassa HOM05D002733 ORTHO05D003856 9.0e-23 111.3 127 43.3
Duzib213G0038 Durio zibethinus HOM05D002733 ORTHO05D003856 1.5e-22 110.5 134 44.0
QL02p042555 Quercus lobata HOM05D002733 ORTHO05D003856 1.5e-22 110.5 128 41.4
FvH4_5g06160 Fragaria vesca HOM05D002733 ORTHO05D003856 2.0e-22 110.2 125 43.2
FAN13G0375 Fragaria x ananassa HOM05D002733 ORTHO05D003856 2.0e-22 110.2 125 43.2
FAN18G0094 Fragaria x ananassa HOM05D002733 ORTHO05D003856 2.0e-22 110.2 125 43.2
FAN23G1126 Fragaria x ananassa HOM05D002733 ORTHO05D003856 2.6e-22 109.8 125 40.8
Gohir.A06G065650 Gossypium hirsutum HOM05D002733 ORTHO05D003856 5.8e-22 108.6 123 41.5
Prupe.7G223900 Prunus persica HOM05D002733 ORTHO05D003856 5.8e-22 108.6 125 44.0
Lj3g0006952 Lotus japonicus HOM05D002733 ORTHO05D003856 7.6e-22 108.2 125 41.6
Sed0022151 Sechium edule HOM05D002733 ORTHO05D003856 7.6e-22 108.2 121 39.7
Prupe.7G223800 Prunus persica HOM05D002733 ORTHO05D003856 1.3e-21 107.5 125 43.2
MD02G1059300 Malus domestica HOM05D002733 ORTHO05D003856 1.7e-21 107.1 126 42.1
Cpa.g.sc81.85 Carica papaya HOM05D002733 ORTHO05D003856 2.2e-21 106.7 125 42.4
MD00G1107900 Malus domestica HOM05D002733 ORTHO05D003856 2.2e-21 106.7 126 42.9
Thecc.09G104200 Theobroma cacao HOM05D002733 ORTHO05D003856 2.2e-21 106.7 139 41.7
CSS0001293 Camellia sinensis var. sinensis HOM05D002733 ORTHO05D003856 3.8e-21 105.9 124 40.3
Gohir.D06G064250 Gossypium hirsutum HOM05D002733 ORTHO05D003856 4.9e-21 105.5 123 39.8
Gorai.010G075000 Gossypium raimondii HOM05D002733 ORTHO05D003856 4.9e-21 105.5 123 39.8
Duzib168G2229 Durio zibethinus HOM05D002733 ORTHO05D003856 6.4e-21 105.1 126 41.3
MD15G1316300 Malus domestica HOM05D002733 ORTHO05D003856 8.4e-21 104.8 141 40.4
CiPaw.03G015000 Carya illinoinensis HOM05D002733 ORTHO05D003856 1.1e-20 104.4 192 33.3
TPR.G1412 Trifolium pratense HOM05D002733 ORTHO05D003856 1.1e-20 104.4 142 39.4
Ciclev10007038m.g Citrus clementina HOM05D002733 ORTHO05D003856 1.4e-20 104.0 191 33.0
COL.COLO4_34789 Corchorus olitorius HOM05D002733 ORTHO05D003856 1.4e-20 104.0 134 41.0
Hma1.2p1_1080F.1_g255020 Hydrangea macrophylla HOM05D002733 ORTHO05D003856 2.4e-20 103.2 143 36.4
Actinidia09441 Actinidia chinensis HOM05D002733 ORTHO05D003856 5.4e-20 102.1 144 37.5
TPR.G18869 Trifolium pratense HOM05D004715 ORTHO05D005644 7.1e-20 101.7 127 41.7
Rhsim05G0042200 Rhododendron simsii HOM05D002733 ORTHO05D003856 9.3e-20 101.3 146 39.0
CiPaw.03G014700 Carya illinoinensis HOM05D002733 ORTHO05D003856 1.6e-19 100.5 151 35.8
Lj1g0000886 Lotus japonicus HOM05D002733 ORTHO05D003856 1.6e-19 100.5 122 41.0
CsaV3_3G004840 Cucumis sativus L. HOM05D002733 ORTHO05D003856 2.7e-19 99.8 114 40.4
Haze_00185 Corylus avellana HOM05D002733 ORTHO05D003856 3.5e-19 99.4 112 40.2
Cfa016244 Carpinus fangiana HOM05D002733 ORTHO05D003856 6.0e-19 98.6 129 38.0
MELO3C004101.2 Cucumis melo HOM05D002733 ORTHO05D003856 6.0e-19 98.6 127 37.8
TPR.G8024 Trifolium pratense HOM05D002733 ORTHO05D003856 6.0e-19 98.6 114 43.9
CiPaw.03G015300 Carya illinoinensis HOM05D002733 ORTHO05D003856 7.8e-19 98.2 191 31.9
AL8G24310 Arabidopsis lyrata HOM05D002733 ORTHO05D003856 1.3e-18 97.4 109 44.0
Prupe.7G224100 Prunus persica HOM05D002733 ORTHO05D003856 1.7e-18 97.1 126 38.9
Ciclev10010395m.g Citrus clementina HOM05D002733 ORTHO05D003856 2.3e-18 96.7 128 39.1
PGSC0003DMG400000368 Solanum tuberosum HOM05D002733 ORTHO05D003856 2.3e-18 96.7 154 36.4
VMungo1080G0152 Vigna mungo HOM05D002733 ORTHO05D003856 3.0e-18 96.3 105 40.0
TPR.G1447 Trifolium pratense HOM05D002733 ORTHO05D003856 5.1e-18 95.5 139 39.6
TPR.G12039 Trifolium pratense HOM05D002733 ORTHO05D003856 6.6e-18 95.1 116 41.4
VMungo1080G0686 Vigna mungo HOM05D002733 ORTHO05D003856 6.6e-18 95.1 105 39.0
TPR.G1395 Trifolium pratense HOM05D002733 ORTHO05D003856 1.5e-17 94.0 117 39.3
CAN.G1774.3 Capsicum annuum HOM05D002733 ORTHO05D003856 1.9e-17 93.6 137 34.3
DCAR_028226 Daucus carota HOM05D002733 ORTHO05D003856 1.9e-17 93.6 129 38.0
Phvul.005G031300 Phaseolus vulgaris HOM05D002733 ORTHO05D003856 1.9e-17 93.6 105 40.0
Haze_00197 Corylus avellana HOM05D002733 ORTHO05D003856 2.5e-17 93.2 105 41.0
CiPaw.03G014800 Carya illinoinensis HOM05D002733 ORTHO05D003856 4.3e-17 92.4 129 40.3
Solyc12g007300.1 Solanum lycopersicum HOM05D002733 ORTHO05D003856 4.3e-17 92.4 149 36.2
Sopen12g003260 Solanum pennellii HOM05D002733 ORTHO05D003856 4.3e-17 92.4 149 36.2
Sabra08G0161200 Salix brachista HOM05D002733 ORTHO05D003856 5.6e-17 92.0 109 45.0
Sp4g22050 Schrenkiella parvula HOM05D002733 ORTHO05D003856 5.6e-17 92.0 188 34.0
Cfa016245 Carpinus fangiana HOM05D002733 ORTHO05D003856 7.3e-17 91.7 128 35.9
AT4G03170 Arabidopsis thaliana HOM05D002733 ORTHO05D003856 1.3e-16 90.9 107 40.2
Prupe.7G224000 Prunus persica HOM05D002733 ORTHO05D003856 1.3e-16 90.9 125 39.2
QL01p018928 Quercus lobata HOM05D002733 ORTHO05D003856 1.6e-16 90.5 131 39.7
Sp5g18240 Schrenkiella parvula HOM05D002733 ORTHO05D003856 1.6e-16 90.5 111 42.3
DCAR_014131 Daucus carota HOM05D002733 ORTHO05D003856 2.1e-16 90.1 188 34.6
Medtr0267s0030 Medicago truncatula HOM05D002733 ORTHO05D003856 2.1e-16 90.1 112 42.0
Peaxi162Scf00665g00126 Petunia axillaris HOM05D002733 ORTHO05D003856 2.1e-16 90.1 102 41.2
Sp4g22450 Schrenkiella parvula HOM05D002733 ORTHO05D003856 2.1e-16 90.1 111 42.3
Medtr3g013820 Medicago truncatula HOM05D002733 ORTHO05D003856 2.8e-16 89.7 112 42.0
COL.COLO4_32232 Corchorus olitorius HOM05D002733 ORTHO05D003856 3.6e-16 89.4 111 39.6
Medtr3g013810 Medicago truncatula HOM05D002733 ORTHO05D003856 3.6e-16 89.4 112 42.0
Medtr3g013920 Medicago truncatula HOM05D002733 ORTHO05D003856 3.6e-16 89.4 112 42.0
AL7G49890 Arabidopsis lyrata HOM05D002733 ORTHO05D003856 4.8e-16 89.0 108 40.7
Glyma.04G133200 Glycine max HOM05D002733 ORTHO05D003856 4.8e-16 89.0 157 28.7
A04p30010 Brassica napus HOM05D002733 ORTHO05D003856 6.2e-16 88.6 140 37.1
BraA04t18506Z Brassica rapa HOM05D002733 ORTHO05D003856 6.2e-16 88.6 140 37.1
Medtr3g013900 Medicago truncatula HOM05D002733 ORTHO05D003856 6.2e-16 88.6 112 41.1
Haze_00196 Corylus avellana HOM05D002733 ORTHO05D003856 8.1e-16 88.2 134 35.1
DCAR_003269 Daucus carota HOM05D002733 ORTHO05D003856 8.1e-16 88.2 191 34.0
Peaxi162Scf00023g00136 Petunia axillaris HOM05D002733 ORTHO05D003856 8.1e-16 88.2 132 37.1
C03p26370 Brassica napus HOM05D002733 ORTHO05D003856 1.8e-15 87.0 183 33.9
C03p26740 Brassica napus HOM05D002733 ORTHO05D003856 1.8e-15 87.0 137 38.0
BolC3t15059H Brassica oleracea HOM05D002733 ORTHO05D003856 1.8e-15 87.0 137 38.0
BolC3t15022H Brassica oleracea HOM05D002733 ORTHO05D003856 2.4e-15 86.7 183 34.4
QL01p018935 Quercus lobata HOM05D002733 ORTHO05D003856 4.0e-15 85.9 132 37.9
A03p22270 Brassica napus HOM05D002733 ORTHO05D003856 5.3e-15 85.5 183 33.9
Nitab4.5_0000316g0140 Nicotiana tabacum HOM05D002733 ORTHO05D003856 5.3e-15 85.5 129 37.2
Sed0027145 Sechium edule HOM05D002733 ORTHO05D003856 5.3e-15 85.5 119 37.0
Aqoxy1G01499 Aquilegia oxysepala HOM05D002733 ORTHO05D003856 6.9e-15 85.1 125 36.0
Phvul.005G028900 Phaseolus vulgaris HOM05D002733 ORTHO05D003856 9.0e-15 84.7 105 36.2
BcaC01g05431 Brassica carinata HOM05D002733 ORTHO05D003856 1.2e-14 84.3 137 37.2
QL01p018939 Quercus lobata HOM05D002733 ORTHO05D003856 1.2e-14 84.3 128 39.8
THA.LOC104810048 Tarenaya hassleriana HOM05D002733 ORTHO05D003856 1.2e-14 84.3 154 34.4
Aqoxy1G01498 Aquilegia oxysepala HOM05D002733 ORTHO05D003856 2.0e-14 83.6 150 34.7
Nitab4.5_0001888g0040 Nicotiana tabacum HOM05D002733 ORTHO05D003856 2.0e-14 83.6 129 37.2
BraA03t11459Z Brassica rapa HOM05D002733 ORTHO05D003856 2.6e-14 83.2 178 33.7
Aqoxy2G03580 Aquilegia oxysepala HOM05D002733 ORTHO05D003856 4.5e-14 82.4 124 35.5
BcaB06g29131 Brassica carinata HOM05D002733 ORTHO05D003856 5.8e-14 82.0 111 37.8
PSO566G0305 Papaver somniferum HOM05D002733 ORTHO05D003856 7.6e-14 81.6 106 35.8
Actinidia20408 Actinidia chinensis HOM05D002733 ORTHO05D003856 9.9e-14 81.3 133 33.8
Aa31LG8G17210 Aethionema arabicum HOM05D002733 ORTHO05D003856 9.9e-14 81.3 119 37.0
AL4G37790 Arabidopsis lyrata HOM05D002733 ORTHO05D003856 1.3e-13 80.9 135 37.8
Carub.0004s2232 Capsella rubella HOM05D002733 ORTHO05D003856 1.3e-13 80.9 118 37.3
A05p06330 Brassica napus HOM05D002733 ORTHO05D003856 2.2e-13 80.1 166 33.1
Carub.0003s2754 Capsella rubella HOM05D002733 ORTHO05D003856 2.2e-13 80.1 106 38.7
Aa31LG7G1520 Aethionema arabicum HOM05D002733 ORTHO05D003856 2.9e-13 79.7 128 33.6
C04p07280 Brassica napus HOM05D002733 ORTHO05D003856 2.9e-13 79.7 128 39.1
BolC4t22351H Brassica oleracea HOM05D002733 ORTHO05D003856 2.9e-13 79.7 128 39.1
Aa31LG8G17200 Aethionema arabicum HOM05D002733 ORTHO05D003856 4.9e-13 79.0 120 38.3
BcaC02g07356 Brassica carinata HOM05D002733 ORTHO05D003856 4.9e-13 79.0 111 38.7
BcaB02g09048 Brassica carinata HOM05D002733 ORTHO05D003856 6.4e-13 78.6 111 40.5
BcaC02g12127 Brassica carinata HOM05D002733 ORTHO05D003856 6.4e-13 78.6 166 33.1
BolC4t28286H Brassica oleracea HOM05D002733 ORTHO05D003856 8.4e-13 78.2 111 38.7
Sed0017653 Sechium edule HOM05D002733 ORTHO05D003856 8.4e-13 78.2 126 29.4
BraA05t19601Z Brassica rapa HOM05D002733 ORTHO05D003856 1.1e-12 77.8 166 33.7
CiPaw.03G015100 Carya illinoinensis HOM05D002733 ORTHO05D003856 1.1e-12 77.8 115 35.7
Aa31LG7G1530 Aethionema arabicum HOM05D002733 ORTHO05D003856 3.2e-12 76.3 129 34.9
Aa31LG8G17170 Aethionema arabicum HOM05D002733 ORTHO05D003856 5.4e-12 75.5 132 35.6
Aqoxy1G01797 Aquilegia oxysepala HOM05D000896 ORTHO05D000594 5.4e-12 75.5 104 39.4
AT1G20600 Arabidopsis thaliana HOM05D002733 ORTHO05D003856 5.4e-12 75.5 88 45.5
PGSC0003DMG400000371 Solanum tuberosum HOM05D002733 ORTHO05D003856 5.4e-12 75.5 124 30.6
Peaxi162Scf00665g00139 Petunia axillaris HOM05D002733 ORTHO05D003856 7.1e-12 75.1 129 34.9
Thhalv10017517m.g Eutrema salsugineum HOM05D002733 ORTHO05D003856 1.2e-11 74.3 131 33.6
Peaxi162Scf00665g00148 Petunia axillaris HOM05D002733 ORTHO05D003856 1.6e-11 73.9 182 30.2
Aa31LG7G1600 Aethionema arabicum HOM05D002733 ORTHO05D003856 2.1e-11 73.6 104 39.4
Aa31LG8G17140 Aethionema arabicum HOM05D002733 ORTHO05D003856 3.5e-11 72.8 104 36.5
Aa31LG8G17160 Aethionema arabicum HOM05D002733 ORTHO05D003856 3.5e-11 72.8 129 35.7
TPR.G22027 Trifolium pratense HOM05D002733 ORTHO05D003856 4.6e-11 72.4 72 47.2
Medtr5g007910 Medicago truncatula HOM05D000896 ORTHO05D000594 6.0e-11 72.0 95 37.9
AT4G03160 Arabidopsis thaliana HOM05D002733 ORTHO05D003856 1.3e-10 70.9 106 36.8
Dinv41650 Davidia involucrata HOM05D002733 ORTHO05D003856 2.3e-10 70.1 98 41.8
PSO782G1409 Papaver somniferum HOM05D002733 ORTHO05D003856 3.0e-10 69.7 106 40.6
ClCG08G014520 Citrullus lanatus HOM05D000001 ORTHO05D009054 3.9e-10 69.3 163 29.4
MD02G1060300 Malus domestica HOM05D002733 ORTHO05D003856 3.9e-10 69.3 100 37.0
CARHR135120 Cardamine hirsuta HOM05D002733 ORTHO05D003856 6.7e-10 68.6 119 32.8
FAN08G1294 Fragaria x ananassa HOM05D000896 ORTHO05D000594 3.3e-09 66.2 137 27.0
Aa31LG8G17150 Aethionema arabicum HOM05D002733 ORTHO05D003856 5.6e-09 65.5 102 39.2
FAN13G2118 Fragaria x ananassa HOM05D000896 ORTHO05D000594 5.6e-09 65.5 137 27.0
FAN13G2868 Fragaria x ananassa HOM05D000896 ORTHO05D013425 5.6e-09 65.5 137 27.0
FAN19G0693 Fragaria x ananassa HOM05D002733 ORTHO05D003856 5.6e-09 65.5 62 43.5
COL.COLO4_00094 Corchorus olitorius HOM05D002733 ORTHO05D003856 1.3e-08 64.3 77 39.0
CsaV3_2G029240 Cucumis sativus L. HOM05D000896 ORTHO05D000594 1.6e-08 63.9 115 35.7
FvH4_5g16210 Fragaria vesca HOM05D000896 ORTHO05D000594 2.1e-08 63.5 137 27.0
FAN18G2330 Fragaria x ananassa HOM05D000896 ORTHO05D013425 2.1e-08 63.5 137 27.0
MELO3C010986.2 Cucumis melo HOM05D000896 ORTHO05D000594 6.2e-08 62.0 116 36.2
TPR.G9525 Trifolium pratense HOM05D000896 ORTHO05D000594 1.1e-07 61.2 111 34.2
Nitab4.5_0005564g0030 Nicotiana tabacum HOM05D002733 ORTHO05D003856 2.4e-07 60.1 109 32.1
BcaC05g24385 Brassica carinata HOM05D000896 ORTHO05D000594 4.0e-07 59.3 181 27.6
C05p03790 Brassica napus HOM05D000896 ORTHO05D000594 4.0e-07 59.3 181 27.6
BolC5t29156H Brassica oleracea HOM05D000896 ORTHO05D000594 4.0e-07 59.3 181 27.6
Dinv07992 Davidia involucrata HOM05D002733 ORTHO05D003856 4.0e-07 59.3 96 39.6
Aa31LG7G1580 Aethionema arabicum HOM05D002733 ORTHO05D003856 6.9e-07 58.5 73 41.1
VMungo0464G0934 Vigna mungo HOM05D022012 ORTHO05D003856 6.9e-07 58.5 103 31.1
Medtr3g452640 Medicago truncatula HOM05D000896 ORTHO05D000594 9.0e-07 58.2 102 34.3
HPP92_018316 Vanilla planifolia HOM05D015951 ORTHO05D018073 1.2e-06 57.8 139 25.2
CARHR135110 Cardamine hirsuta HOM05D002733 ORTHO05D003856 4.5e-06 55.8 86 31.4
Lj4g0007022 Lotus japonicus HOM05D000896 ORTHO05D000594 5.8e-06 55.5 112 29.5
MELO3C010987.2 Cucumis melo HOM05D000896 ORTHO05D000594 7.6e-06 55.1 201 25.9
CsaV3_4G013340 Cucumis sativus L. HOM05D000896 ORTHO05D000594 7.6e-06 55.1 116 28.4
Dinv26718 Davidia involucrata HOM05D002733 ORTHO05D003856 7.6e-06 55.1 81 40.7
Ca_13757_v3 Cicer arietinum L. HOM05D000896 ORTHO05D000594 9.9e-06 54.7 156 31.4


User provided reference genes

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