Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.L02166 Eucalyptus grandis HOM05D005226 ORTHO05D004666 1.2e-56 223.0 117 100.0
Eucgr.D01311 Eucalyptus grandis HOM05D005226 ORTHO05D004666 8.8e-52 206.8 117 93.2
Eucgr.D01314 Eucalyptus grandis HOM05D005226 ORTHO05D004666 4.8e-50 201.1 117 89.7
Thecc.06G087600 Theobroma cacao HOM05D005226 ORTHO05D004666 1.1e-20 103.6 111 54.1
TAR627G0695 Trochodendron aralioides HOM05D005226 ORTHO05D004666 1.1e-20 103.6 90 62.2
Potri.004G016800 Populus trichocarpa HOM05D005226 ORTHO05D004666 3.1e-20 102.1 114 52.6
Thecc.06G219100 Theobroma cacao HOM05D005226 ORTHO05D004666 3.1e-20 102.1 111 53.2
COL.COLO4_31758 Corchorus olitorius HOM05D005226 ORTHO05D004666 6.8e-20 100.9 110 49.1
PGR042G2779 Punica granatum HOM05D005226 ORTHO05D004666 8.9e-20 100.5 91 58.2
Duzib192G0836 Durio zibethinus HOM05D005226 ORTHO05D004666 1.2e-19 100.1 107 52.3
Duzib235G0113 Durio zibethinus HOM05D005226 ORTHO05D004666 1.2e-19 100.1 110 50.9
Duzib160G0401 Durio zibethinus HOM05D005226 ORTHO05D004666 1.5e-19 99.8 110 51.8
Potri.011G002100 Populus trichocarpa HOM05D005226 ORTHO05D004666 2.0e-19 99.4 114 50.9
Nn5g29365 Nelumbo nucifera HOM05D005226 ORTHO05D004666 3.4e-19 98.6 114 51.8
Gohir.A05G169600 Gossypium hirsutum HOM05D005226 ORTHO05D004666 1.3e-18 96.7 85 58.8
Prupe.4G022200 Prunus persica HOM05D005226 ORTHO05D004666 1.3e-18 96.7 107 52.3
Gorai.009G178000 Gossypium raimondii HOM05D005226 ORTHO05D004666 2.2e-18 95.9 85 58.8
Sabra04G0009100 Salix brachista HOM05D005226 ORTHO05D004666 2.2e-18 95.9 85 58.8
Aqoxy1G03603 Aquilegia oxysepala HOM05D005226 ORTHO05D004666 3.7e-18 95.1 106 50.9
Manes.16G008100 Manihot esculenta HOM05D005226 ORTHO05D004666 8.3e-18 94.0 119 49.6
TAR624G0719 Trochodendron aralioides HOM05D005226 ORTHO05D004666 1.1e-17 93.6 112 52.7
CiPaw.09G090600 Carya illinoinensis HOM05D005226 ORTHO05D004666 1.4e-17 93.2 98 52.0
DCAR_004212 Daucus carota HOM05D005226 ORTHO05D004666 1.9e-17 92.8 89 53.9
Gohir.D05G172800 Gossypium hirsutum HOM05D005226 ORTHO05D004666 1.9e-17 92.8 85 57.6
Nitab4.5_0003254g0050 Nicotiana tabacum HOM05D005226 ORTHO05D004666 1.9e-17 92.8 86 54.7
ClCG01G022050 Citrullus lanatus HOM05D005226 ORTHO05D004666 5.4e-17 91.3 110 50.0
Rhsim02G0108700 Rhododendron simsii HOM05D005226 ORTHO05D004666 5.4e-17 91.3 87 57.5
Rhsim02G0109500 Rhododendron simsii HOM05D005226 ORTHO05D004666 5.4e-17 91.3 87 57.5
Medtr2g022960 Medicago truncatula HOM05D005226 ORTHO05D004666 7.0e-17 90.9 112 49.1
CiPaw.10G070100 Carya illinoinensis HOM05D005226 ORTHO05D004666 9.2e-17 90.5 101 50.5
Nn1g03549 Nelumbo nucifera HOM05D005226 ORTHO05D004666 9.2e-17 90.5 87 58.6
Dinv20040 Davidia involucrata HOM05D005226 ORTHO05D004666 1.2e-16 90.1 111 51.4
MD05G1344200 Malus domestica HOM05D005226 ORTHO05D004666 1.2e-16 90.1 106 50.9
CAN.G569.14 Capsicum annuum HOM05D005226 ORTHO05D004666 1.6e-16 89.7 94 51.1
Ciclev10017536m.g Citrus clementina HOM05D005226 ORTHO05D004666 1.6e-16 89.7 105 50.5
Rhsim02G0108200 Rhododendron simsii HOM05D005226 ORTHO05D004666 2.1e-16 89.4 95 51.6
Cfa000235 Carpinus fangiana HOM05D005226 ORTHO05D004666 2.7e-16 89.0 101 51.5
PGR004G1778 Punica granatum HOM05D005226 ORTHO05D004666 2.7e-16 89.0 109 45.0
Solyc02g080450.1 Solanum lycopersicum HOM05D005226 ORTHO05D004666 1.0e-15 87.0 92 51.1
Sopen02g025140 Solanum pennellii HOM05D005226 ORTHO05D004666 1.0e-15 87.0 92 51.1
MD00G1206700 Malus domestica HOM05D005226 ORTHO05D004666 1.3e-15 86.7 118 46.6
MD10G1320200 Malus domestica HOM05D005226 ORTHO05D004666 1.3e-15 86.7 118 46.6
DCAR_008143 Daucus carota HOM05D005226 ORTHO05D004666 1.7e-15 86.3 99 48.5
Lalb_Chr15g0087551 Lupinus albus HOM05D005226 ORTHO05D004666 1.7e-15 86.3 111 45.0
Nitab4.5_0006137g0040 Nicotiana tabacum HOM05D005226 ORTHO05D004666 2.3e-15 85.9 96 49.0
RcHm_v2.0_Chr5g0003391 Rosa chinensis HOM05D005226 ORTHO05D004666 2.3e-15 85.9 101 49.5
QL05p073519 Quercus lobata HOM05D005226 ORTHO05D004666 3.0e-15 85.5 89 55.1
QL05p073756 Quercus lobata HOM05D005226 ORTHO05D004666 3.0e-15 85.5 89 55.1
TPR.G7637 Trifolium pratense HOM05D005226 ORTHO05D004666 3.0e-15 85.5 112 46.4
Gohir.A10G013400 Gossypium hirsutum HOM05D005226 ORTHO05D004666 3.9e-15 85.1 94 50.0
FAN25G2807 Fragaria x ananassa HOM05D005226 ORTHO05D004666 5.1e-15 84.7 101 50.5
Eucgr.E04074 Eucalyptus grandis HOM05D005226 ORTHO05D004666 8.6e-15 84.0 80 55.0
Aqoxy4G01362 Aquilegia oxysepala HOM05D005226 ORTHO05D004666 1.1e-14 83.6 78 55.1
Eucgr.E04072 Eucalyptus grandis HOM05D005226 ORTHO05D004666 1.1e-14 83.6 80 53.8
Gohir.D10G013300 Gossypium hirsutum HOM05D005226 ORTHO05D004666 1.1e-14 83.6 104 47.1
Gorai.011G015000 Gossypium raimondii HOM05D005226 ORTHO05D004666 1.1e-14 83.6 104 47.1
CsaV3_6G049110 Cucumis sativus L. HOM05D005226 ORTHO05D004666 1.5e-14 83.2 106 48.1
Glyma.13G205400 Glycine max HOM05D005226 ORTHO05D004666 1.5e-14 83.2 106 47.2
PSO832G1518 Papaver somniferum HOM05D005226 ORTHO05D004666 1.5e-14 83.2 101 46.5
ClCG03G004790 Citrullus lanatus HOM05D005226 ORTHO05D004666 1.9e-14 82.8 92 51.1
TWI38G0534 Tripterygium wilfordii HOM05D005226 ORTHO05D004666 1.9e-14 82.8 96 49.0
Cc09_g01800 Coffea canephora HOM05D005226 ORTHO05D004666 3.3e-14 82.0 94 48.9
FvH4_3g02270 Fragaria vesca HOM05D005226 ORTHO05D004666 3.3e-14 82.0 101 48.5
Sed0027353 Sechium edule HOM05D005226 ORTHO05D004666 5.6e-14 81.3 96 52.1
Eucgr.E04071 Eucalyptus grandis HOM05D005226 ORTHO05D004666 7.3e-14 80.9 80 53.8
MELO3C002462.2 Cucumis melo HOM05D005226 ORTHO05D004666 1.2e-13 80.1 116 43.1
PGSC0003DMG400004522 Solanum tuberosum HOM05D005226 ORTHO05D004666 1.2e-13 80.1 86 47.7
CANSAT56G2875 Cannabis sativa HOM05D005226 ORTHO05D004666 2.1e-13 79.3 92 50.0
Cfa021903 Carpinus fangiana HOM05D005226 ORTHO05D004666 2.1e-13 79.3 107 49.5
MELO3C007384.2 Cucumis melo HOM05D005226 ORTHO05D004666 2.1e-13 79.3 113 45.1
Rhsim02G0109000 Rhododendron simsii HOM05D005226 ORTHO05D004666 2.1e-13 79.3 82 56.1
Lj6g0027274 Lotus japonicus HOM05D005226 ORTHO05D004666 2.8e-13 79.0 112 45.5
Sed0011520 Sechium edule HOM05D005226 ORTHO05D004666 2.8e-13 79.0 106 43.4
Glyma.15G107000 Glycine max HOM05D005226 ORTHO05D004666 3.6e-13 78.6 106 44.3
Hma1.2p1_1142F.1_g260990 Hydrangea macrophylla HOM05D005226 ORTHO05D004666 3.6e-13 78.6 98 50.0
Lsat_1_v5_gn_4_59601 Lactuca sativa HOM05D005226 ORTHO05D004666 3.6e-13 78.6 87 49.4
MBI18_g02740_MAGBIO Magnolia biondii HOM05D005226 ORTHO05D004666 4.7e-13 78.2 95 49.5
Sed0005209 Sechium edule HOM05D005226 ORTHO05D004666 4.7e-13 78.2 109 46.8
Haze_06787 Corylus avellana HOM05D005226 ORTHO05D004666 6.2e-13 77.8 108 48.1
PSO210G5560 Papaver somniferum HOM05D005226 ORTHO05D004666 6.2e-13 77.8 101 44.6
Peaxi162Scf00262g00094 Petunia axillaris HOM05D005226 ORTHO05D004666 8.1e-13 77.4 81 51.9
Oeu051213.1 Olea europaea HOM05D005226 ORTHO05D004666 1.1e-12 77.0 88 50.0
Peaxi162Scf00565g00021 Petunia axillaris HOM05D005226 ORTHO05D004666 1.1e-12 77.0 81 48.1
Nitab4.5_0000005g0440 Nicotiana tabacum HOM05D005226 ORTHO05D004666 2.3e-12 75.9 86 48.8
PGSC0003DMG400016491 Solanum tuberosum HOM05D005226 ORTHO05D004666 2.3e-12 75.9 81 50.6
ECA234G1355 Erigeron canadensis HOM05D005226 ORTHO05D004666 3.1e-12 75.5 95 42.1
Oeu033894.1 Olea europaea HOM05D005226 ORTHO05D004666 3.1e-12 75.5 109 44.0
CsaV3_1G010830 Cucumis sativus L. HOM05D005226 ORTHO05D004666 4.0e-12 75.1 92 50.0
Migut.M01309 Erythranthe guttata HOM05D005226 ORTHO05D004666 4.0e-12 75.1 108 41.7
HanXRQChr16g0515991 Helianthus annuus HOM05D005226 ORTHO05D004666 4.0e-12 75.1 103 39.8
SGA_v2.0_scaffold89G27461 Striga asiatica HOM05D005226 ORTHO05D004666 8.9e-12 73.9 64 56.2
Gorai.010G180000 Gossypium raimondii HOM05D005226 ORTHO05D004666 1.2e-11 73.6 62 59.7
SGA_v2.0_scaffold4G01918 Striga asiatica HOM05D005226 ORTHO05D004666 1.2e-11 73.6 102 43.1
MSTRG.13145 Avicennia marina HOM05D005226 ORTHO05D004666 2.6e-11 72.4 104 42.3
Gohir.A06G148050 Gossypium hirsutum HOM05D005226 ORTHO05D004666 2.6e-11 72.4 62 58.1
Gohir.D06G153975 Gossypium hirsutum HOM05D005226 ORTHO05D004666 3.4e-11 72.0 62 59.7
VMungo0540G0286 Vigna mungo HOM05D005226 ORTHO05D004666 4.4e-11 71.6 106 41.5
Atru.chr10.2207 Acer truncatum HOM05D005226 ORTHO05D004666 5.8e-11 71.2 99 43.4
Phvul.006G150300 Phaseolus vulgaris HOM05D005226 ORTHO05D004666 7.5e-11 70.9 81 48.1
Haze_09878 Corylus avellana HOM05D005226 ORTHO05D004666 1.3e-10 70.1 101 45.5
Lalb_Chr18g0056301 Lupinus albus HOM05D005226 ORTHO05D004666 2.9e-10 68.9 111 40.5
BolC5t29718H Brassica oleracea HOM05D005226 ORTHO05D004666 6.4e-10 67.8 89 41.6
arahy.Tifrunner.gnm1.ann1.0GES1T Arachis hypogaea HOM05D005226 ORTHO05D004666 8.3e-10 67.4 67 56.7
arahy.Tifrunner.gnm1.ann1.1P1WAU Arachis hypogaea HOM05D005226 ORTHO05D004666 8.3e-10 67.4 67 56.7
Carub.0001s1129 Capsella rubella HOM05D005226 ORTHO05D004666 8.3e-10 67.4 105 37.1
Medtr3g463740 Medicago truncatula HOM05D005226 ORTHO05D004666 8.3e-10 67.4 80 46.2
THA.LOC104806304 Tarenaya hassleriana HOM05D005226 ORTHO05D004666 3.2e-09 65.5 79 48.1
A06p08210 Brassica napus HOM05D005226 ORTHO05D004666 4.1e-09 65.1 89 40.4
BraA06t24021Z Brassica rapa HOM05D005226 ORTHO05D004666 4.1e-09 65.1 89 40.4
THA.LOC104818840 Tarenaya hassleriana HOM05D005226 ORTHO05D004666 4.1e-09 65.1 99 43.4
BcaC05g25032 Brassica carinata HOM05D005226 ORTHO05D004666 5.4e-09 64.7 89 41.6
CARHR011960 Cardamine hirsuta HOM05D005226 ORTHO05D004666 5.4e-09 64.7 101 40.6
Glyma.18G063800 Glycine max HOM05D005226 ORTHO05D004666 5.4e-09 64.7 86 45.3
AT4G04745 Arabidopsis thaliana HOM05D009543 ORTHO05D004666 7.1e-09 64.3 69 53.6
BcaNung04807 Brassica carinata HOM05D005226 ORTHO05D004666 9.2e-09 63.9 89 39.3
AL1G22790 Arabidopsis lyrata HOM05D005226 ORTHO05D004666 1.2e-08 63.5 100 38.0
AL6G48230 Arabidopsis lyrata HOM05D009543 ORTHO05D004666 1.2e-08 63.5 69 53.6
AT1G11655 Arabidopsis thaliana HOM05D005226 ORTHO05D004666 1.2e-08 63.5 100 37.0
A09p26130 Brassica napus HOM05D009543 ORTHO05D004666 1.6e-08 63.2 75 46.7
BraA09t38180Z Brassica rapa HOM05D009543 ORTHO05D004666 1.6e-08 63.2 75 46.7
Thhalv10029169m.g Eutrema salsugineum HOM05D009543 ORTHO05D004666 1.6e-08 63.2 69 49.3
arahy.Tifrunner.gnm1.ann1.89FC4C Arachis hypogaea HOM05D005226 ORTHO05D004666 2.1e-08 62.8 86 43.0
C05p09770 Brassica napus HOM05D005226 ORTHO05D004666 2.1e-08 62.8 89 40.4
Nitab4.5_0000389g0060 Nicotiana tabacum HOM05D005226 ORTHO05D004666 2.7e-08 62.4 74 47.3
BcaB01g02575 Brassica carinata HOM05D009543 ORTHO05D004666 3.5e-08 62.0 74 48.6
BcaB03g13244 Brassica carinata HOM05D005226 ORTHO05D004666 3.5e-08 62.0 84 45.2
BcaC04g21321 Brassica carinata HOM05D009543 ORTHO05D004666 3.5e-08 62.0 69 50.7
BcaC07g38677 Brassica carinata HOM05D005226 ORTHO05D004666 3.5e-08 62.0 107 39.3
C09p33170 Brassica napus HOM05D009543 ORTHO05D004666 3.5e-08 62.0 69 50.7
BolC8t49112H Brassica oleracea HOM05D005226 ORTHO05D004666 3.5e-08 62.0 107 39.3
BolC9t56151H Brassica oleracea HOM05D009543 ORTHO05D004666 3.5e-08 62.0 69 50.7
BcaB08g37410 Brassica carinata HOM05D005226 ORTHO05D004666 4.6e-08 61.6 86 39.5
A09p64400 Brassica napus HOM05D005226 ORTHO05D004666 4.6e-08 61.6 89 39.3
C03p36430 Brassica napus HOM05D009543 ORTHO05D004666 4.6e-08 61.6 74 45.9
BolC3t15955H Brassica oleracea HOM05D009543 ORTHO05D004666 4.6e-08 61.6 74 45.9
BraA09t41784Z Brassica rapa HOM05D005226 ORTHO05D004666 4.6e-08 61.6 89 39.3
BcaB01g01831 Brassica carinata HOM05D009543 ORTHO05D004666 6.0e-08 61.2 69 47.8
A03p30180 Brassica napus HOM05D009543 ORTHO05D004666 6.0e-08 61.2 74 44.6
BraA03t12202Z Brassica rapa HOM05D009543 ORTHO05D004666 6.0e-08 61.2 74 44.6
Thhalv10009573m.g Eutrema salsugineum HOM05D005226 ORTHO05D004666 6.0e-08 61.2 101 38.6
Peaxi162Scf00565g00036 Petunia axillaris HOM05D005226 ORTHO05D004666 6.0e-08 61.2 65 52.3
BcaC07g41768 Brassica carinata HOM05D005226 ORTHO05D004666 7.8e-08 60.8 89 38.2
C08p14770 Brassica napus HOM05D005226 ORTHO05D004666 7.8e-08 60.8 107 39.3
C08p48100 Brassica napus HOM05D005226 ORTHO05D004666 7.8e-08 60.8 89 38.2
EL10Ac8g20036 Beta vulgaris HOM05D005226 ORTHO05D004666 3.0e-07 58.9 69 44.9
AL7G31950 Arabidopsis lyrata HOM05D009543 ORTHO05D004666 3.9e-07 58.5 73 42.5
Carub.0006s3264 Capsella rubella HOM05D009543 ORTHO05D004666 5.1e-07 58.2 73 45.2
Sp6g04195 Schrenkiella parvula HOM05D009543 ORTHO05D004666 6.6e-07 57.8 68 45.6
CARHR252810 Cardamine hirsuta HOM05D009543 ORTHO05D004666 8.6e-07 57.4 66 51.5
A08p33360 Brassica napus HOM05D005226 ORTHO05D004666 1.1e-06 57.0 89 39.3
ATR0752G088 Amborella trichopoda HOM05D005226 ORTHO05D004666 2.5e-06 55.8 68 47.1
SalBow8G4932 Salvia bowleyana HOM05D005226 ORTHO05D004666 2.5e-06 55.8 87 44.8
BcaNung02262 Brassica carinata HOM05D009543 ORTHO05D004666 3.3e-06 55.5 73 43.8
TPR.G21187 Trifolium pratense HOM05D005226 ORTHO05D004666 3.3e-06 55.5 67 47.8
BraA08t35253Z Brassica rapa HOM05D005226 ORTHO05D004666 4.3e-06 55.1 89 39.3
unitig_26.g9388 Utricularia gibba HOM05D005226 ORTHO05D004666 5.6e-06 54.7 87 44.8
BcaC09g51183 Brassica carinata HOM05D009543 ORTHO05D004666 7.3e-06 54.3 73 41.1
C01p15970 Brassica napus HOM05D009543 ORTHO05D004666 7.3e-06 54.3 73 41.1
BolC1t01557H Brassica oleracea HOM05D009543 ORTHO05D004666 7.3e-06 54.3 73 41.1
AT4G21902 Arabidopsis thaliana HOM05D009543 ORTHO05D004666 9.5e-06 53.9 95 32.6
CARHR228690 Cardamine hirsuta HOM05D009543 ORTHO05D004666 9.5e-06 53.9 95 34.7


User provided reference genes

Program Settings