Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.L02096 Eucalyptus grandis HOM05D004574 ORTHO05D005612 1.4e-154 549.7 288 100.0
Eucgr.C04073 Eucalyptus grandis HOM05D004574 ORTHO05D005612 5.1e-117 424.9 288 81.9
Eucgr.L03484 Eucalyptus grandis HOM05D004574 ORTHO05D005612 3.4e-105 385.6 251 83.3
Eucgr.L03201 Eucalyptus grandis HOM05D004574 ORTHO05D005612 1.0e-93 347.4 266 73.7
Haze_19313 Corylus avellana HOM05D004574 ORTHO05D005612 1.5e-76 290.4 284 58.8
PGR102G2914 Punica granatum HOM05D004574 ORTHO05D005612 7.4e-76 288.1 296 56.8
QL02p091406 Quercus lobata HOM05D004574 ORTHO05D005612 1.8e-74 283.5 299 54.8
Eucgr.L02934 Eucalyptus grandis HOM05D004574 ORTHO05D005612 5.9e-73 278.5 159 91.8
Hund14397 Selenicereus undatus HOM05D004574 ORTHO05D005612 2.9e-72 276.2 289 54.0
Ciclev10007567m.g Citrus clementina HOM05D004574 ORTHO05D005612 5.5e-71 271.9 289 53.3
CiPaw.16G117400 Carya illinoinensis HOM05D004574 ORTHO05D005612 7.2e-71 271.6 282 55.7
Potri.018G113600 Populus trichocarpa HOM05D004574 ORTHO05D005612 7.2e-71 271.6 285 55.4
Sc18g0000060 Simmondsia chinensis HOM05D004574 ORTHO05D005612 7.2e-71 271.6 287 55.1
Sabra18G0096500 Salix brachista HOM05D004574 ORTHO05D005612 9.4e-71 271.2 277 57.4
Prupe.7G253700 Prunus persica HOM05D004574 ORTHO05D005612 3.0e-69 266.2 305 53.1
Manes.14G139500 Manihot esculenta HOM05D004574 ORTHO05D005612 4.8e-67 258.8 297 50.8
Cc06_g07390 Coffea canephora HOM05D004574 ORTHO05D005612 1.4e-66 257.3 293 51.2
Atru.chr7.229_Atru.chr7.228 Acer truncatum HOM05D004574 ORTHO05D005612 4.1e-66 255.8 305 49.5
MD02G1012700 Malus domestica HOM05D004574 ORTHO05D005612 4.1e-66 255.8 295 52.9
MBI14_g15649_MAGBIO Magnolia biondii HOM05D004574 ORTHO05D005612 6.9e-66 255.0 339 46.9
Actinidia21909 Actinidia chinensis HOM05D004574 ORTHO05D005612 1.2e-65 254.2 312 48.4
Ah.09g223910 Amaranthus hybridus HOM05D004574 ORTHO05D005612 1.2e-65 254.2 290 53.4
Cfa020884 Carpinus fangiana HOM05D004574 ORTHO05D005612 1.5e-65 253.8 284 53.2
Gohir.A06G049000 Gossypium hirsutum HOM05D004574 ORTHO05D005612 1.5e-65 253.8 296 52.7
THA.LOC104815398 Tarenaya hassleriana HOM05D004574 ORTHO05D005612 2.0e-65 253.4 294 51.7
Thecc.09G142400 Theobroma cacao HOM05D004574 ORTHO05D005612 5.9e-65 251.9 294 50.7
Actinidia04251 Actinidia chinensis HOM05D004574 ORTHO05D005612 1.3e-64 250.8 309 49.5
Gorai.010G054900 Gossypium raimondii HOM05D004574 ORTHO05D005612 1.7e-64 250.4 294 52.7
Lalb_Chr12g0198521 Lupinus albus HOM05D004574 ORTHO05D005612 2.2e-64 250.0 308 49.7
MD15G1158500 Malus domestica HOM05D004574 ORTHO05D005612 2.9e-64 249.6 305 51.5
CsaV3_1G028540 Cucumis sativus L. HOM05D004574 ORTHO05D005612 6.5e-64 248.4 318 47.8
Migut.J01279 Erythranthe guttata HOM05D004574 ORTHO05D005612 6.5e-64 248.4 301 49.5
Gohir.D06G048700 Gossypium hirsutum HOM05D004574 ORTHO05D005612 8.5e-64 248.1 294 52.4
ECA234G1322 Erigeron canadensis HOM05D004574 ORTHO05D005612 1.1e-63 247.7 303 50.5
Nitab4.5_0001671g0130 Nicotiana tabacum HOM05D004574 ORTHO05D005612 1.1e-63 247.7 303 49.8
VMungo1215G1939 Vigna mungo HOM05D004574 ORTHO05D005612 2.5e-63 246.5 301 49.5
MSTRG.19628 Avicennia marina HOM05D004574 ORTHO05D005612 3.2e-63 246.1 307 48.5
BcaC05g29496 Brassica carinata HOM05D004574 ORTHO05D005612 4.2e-63 245.7 302 50.0
C05p58250 Brassica napus HOM05D004574 ORTHO05D005612 4.2e-63 245.7 302 50.0
Thhalv10020109m.g Eutrema salsugineum HOM05D004574 ORTHO05D005612 4.2e-63 245.7 300 50.0
CAN.G518.8 Capsicum annuum HOM05D004574 ORTHO05D005612 1.2e-62 244.2 310 48.7
Duzib168G1873 Durio zibethinus HOM05D004574 ORTHO05D005612 1.6e-62 243.8 292 50.0
BolC5t34479H Brassica oleracea HOM05D004574 ORTHO05D005612 2.1e-62 243.4 302 49.7
vmacro21880 Vaccinium macrocarpon HOM05D004574 ORTHO05D005612 2.1e-62 243.4 338 47.3
BcaC05g29707 Brassica carinata HOM05D004574 ORTHO05D005612 2.7e-62 243.0 299 50.8
Aqoxy7G03519 Aquilegia oxysepala HOM05D004574 ORTHO05D005612 3.6e-62 242.7 298 49.3
Solyc07g007040.4 Solanum lycopersicum HOM05D004574 ORTHO05D005612 3.6e-62 242.7 310 50.3
Sopen07g003110 Solanum pennellii HOM05D004574 ORTHO05D005612 3.6e-62 242.7 310 50.3
Potri.006G189501 Populus trichocarpa HOM05D004574 ORTHO05D005612 4.7e-62 242.3 270 52.2
Glyma.13G156900 Glycine max HOM05D004574 ORTHO05D005612 6.1e-62 241.9 306 48.7
arahy.Tifrunner.gnm1.ann1.YXSX85 Arachis hypogaea HOM05D004574 ORTHO05D005612 7.9e-62 241.5 312 48.7
A05p39200 Brassica napus HOM05D004574 ORTHO05D005612 7.9e-62 241.5 304 50.0
BraA05t22709Z Brassica rapa HOM05D004574 ORTHO05D005612 7.9e-62 241.5 304 50.3
Carub.0003s0894 Capsella rubella HOM05D004574 ORTHO05D005612 7.9e-62 241.5 298 50.3
arahy.Tifrunner.gnm1.ann1.J06XH2 Arachis hypogaea HOM05D004574 ORTHO05D005612 1.8e-61 240.4 309 48.5
Sp3g08180 Schrenkiella parvula HOM05D004574 ORTHO05D005612 2.3e-61 240.0 298 51.0
Duzib187G1624 Durio zibethinus HOM05D004574 ORTHO05D005612 5.2e-61 238.8 296 49.3
Oeu040778.1 Olea europaea HOM05D004574 ORTHO05D005612 5.2e-61 238.8 300 48.3
MELO3C010260.2 Cucumis melo HOM05D004574 ORTHO05D005612 8.8e-61 238.0 318 47.2
Aa31LG3G2320 Aethionema arabicum HOM05D004574 ORTHO05D005612 1.1e-60 237.7 303 50.2
CARHR084360 Cardamine hirsuta HOM05D004574 ORTHO05D005612 1.5e-60 237.3 298 48.7
Nn2g12259 Nelumbo nucifera HOM05D004574 ORTHO05D005612 2.0e-60 236.9 351 44.4
TWI34G0786 Tripterygium wilfordii HOM05D004574 ORTHO05D005612 2.6e-60 236.5 309 46.0
Glyma.17G104500 Glycine max HOM05D004574 ORTHO05D005612 4.4e-60 235.7 307 48.2
Peaxi162Scf00347g00125 Petunia axillaris HOM05D004574 ORTHO05D005612 5.7e-60 235.3 301 48.2
FvH4_1g01590 Fragaria vesca HOM05D004574 ORTHO05D005612 7.4e-60 235.0 324 47.5
RcHm_v2.0_Chr2g0086551 Rosa chinensis HOM05D004574 ORTHO05D005612 7.4e-60 235.0 321 47.7
DCAR_017762 Daucus carota HOM05D004574 ORTHO05D005612 9.7e-60 234.6 308 49.0
FAN28G2389 Fragaria x ananassa HOM05D004574 ORTHO05D005612 1.3e-59 234.2 324 46.6
ECA236G2347 Erigeron canadensis HOM05D004574 ORTHO05D005612 1.7e-59 233.8 299 47.8
Lsat_1_v5_gn_8_60221 Lactuca sativa HOM05D004574 ORTHO05D005612 2.2e-59 233.4 295 49.2
AL3G21080 Arabidopsis lyrata HOM05D004574 ORTHO05D005612 2.8e-59 233.0 298 48.7
TAR625G1332 Trochodendron aralioides HOM05D004574 ORTHO05D005612 3.7e-59 232.6 314 47.5
Lalb_Chr07g0179541 Lupinus albus HOM05D004574 ORTHO05D005612 4.8e-59 232.3 307 46.3
HanXRQChr12g0357011 Helianthus annuus HOM05D004574 ORTHO05D005612 1.1e-58 231.1 303 49.2
Hma1.2p1_1784F.1_g302190 Hydrangea macrophylla HOM05D004574 ORTHO05D005612 1.1e-58 231.1 290 47.9
Nitab4.5_0001151g0100 Nicotiana tabacum HOM05D004574 ORTHO05D005612 1.1e-58 231.1 317 47.6
FAN23G1466 Fragaria x ananassa HOM05D004574 ORTHO05D005612 1.4e-58 230.7 324 45.1
Nn8g39728 Nelumbo nucifera HOM05D004574 ORTHO05D005612 1.4e-58 230.7 281 51.6
FAN19G2203 Fragaria x ananassa HOM05D004574 ORTHO05D005612 1.8e-58 230.3 324 46.3
FAN26G2227 Fragaria x ananassa HOM05D004574 ORTHO05D005612 2.4e-58 229.9 322 45.0
Phvul.003G175300 Phaseolus vulgaris HOM05D004574 ORTHO05D005612 2.4e-58 229.9 307 48.5
Lj4g0023014 Lotus japonicus HOM05D004574 ORTHO05D005612 3.1e-58 229.6 308 46.1
SGA_v2.0_scaffold229G43349 Striga asiatica HOM05D004574 ORTHO05D005612 4.1e-58 229.2 298 46.6
Sed0022583 Sechium edule HOM05D004574 ORTHO05D005612 7.0e-58 228.4 328 45.4
Lj9A709T23 Lonicera japonica HOM05D004574 ORTHO05D005612 2.6e-57 226.5 325 44.9
ClCG06G012070 Citrullus lanatus HOM05D004574 ORTHO05D005612 3.5e-57 226.1 322 45.7
COL.COLO4_24085 Corchorus olitorius HOM05D004574 ORTHO05D005612 3.5e-57 226.1 293 46.1
EL10Ac8g18810 Beta vulgaris HOM05D004574 ORTHO05D005612 5.9e-57 225.3 327 44.0
CANSAT11G2415 Cannabis sativa HOM05D004574 ORTHO05D005612 1.3e-56 224.2 344 42.7
AT3G09850 Arabidopsis thaliana HOM05D004574 ORTHO05D005612 1.7e-56 223.8 300 47.0
unitig_0.g517 Utricularia gibba HOM05D004574 ORTHO05D005612 1.7e-56 223.8 295 47.5
CSS0028433 Camellia sinensis var. sinensis HOM05D004574 ORTHO05D005612 2.2e-56 223.4 292 50.0
PSO170G6219 Papaver somniferum HOM05D004574 ORTHO05D005612 2.2e-56 223.4 343 46.4
Cpa.g.sc46.91 Carica papaya HOM05D004574 ORTHO05D005612 1.1e-55 221.1 337 43.9
DCAR_014931 Daucus carota HOM05D004574 ORTHO05D005612 1.1e-55 221.1 298 47.0
Eucgr.C04076 Eucalyptus grandis HOM05D004574 ORTHO05D005612 4.2e-55 219.2 122 94.3
Psat4g033240 Pisum sativum HOM05D004574 ORTHO05D005612 2.1e-54 216.9 351 41.0
HPP92_005340 Vanilla planifolia HOM05D004574 ORTHO05D005612 2.1e-54 216.9 302 45.4
HanXRQChr05g0139651 Helianthus annuus HOM05D004574 ORTHO05D005612 3.6e-54 216.1 303 45.5
Sed0008757 Sechium edule HOM05D004574 ORTHO05D005612 1.0e-53 214.5 332 42.5
TPR.G15786 Trifolium pratense HOM05D004574 ORTHO05D005612 1.4e-53 214.2 332 42.2
Lsat_1_v5_gn_5_90461 Lactuca sativa HOM05D004574 ORTHO05D005612 8.8e-53 211.5 301 44.5
AUR62041455 Chenopodium quinoa HOM05D004574 ORTHO05D005612 1.5e-52 210.7 322 44.1
Zm00001eb028250 Zea mays HOM05D004574 ORTHO05D005612 1.1e-50 204.5 281 44.8
Medtr4g116570 Medicago truncatula HOM05D004574 ORTHO05D005612 2.4e-50 203.4 341 41.1
CDE05G2637 Ceratophyllum demersum HOM05D004574 ORTHO05D005612 3.2e-47 193.0 305 40.3
Sabra06G0145700 Salix brachista HOM05D004574 ORTHO05D005612 2.3e-45 186.8 261 47.5
LjContig00357g0005900 Lotus japonicus HOM05D000237 ORTHO05D005612 3.1e-42 176.4 195 51.8
GSVIVG01012900001 Vitis vinifera HOM05D004574 ORTHO05D005612 6.1e-38 162.2 179 50.8
Eucgr.C04065 Eucalyptus grandis HOM05D004574 ORTHO05D005612 5.2e-37 159.1 81 97.5
HPP92_005314 Vanilla planifolia HOM05D004574 ORTHO05D005612 1.2e-36 157.9 180 50.0
Hma1.2p1_1784F.1_g302200 Hydrangea macrophylla HOM05D004574 ORTHO05D005612 1.4e-34 151.0 193 46.1
Ca_21611_v3 Cicer arietinum L. HOM05D004574 ORTHO05D005612 1.7e-32 144.1 229 42.4
ATR0629G131 Amborella trichopoda HOM05D004574 ORTHO05D005612 2.3e-32 143.7 221 42.1
AUR62011249 Chenopodium quinoa HOM05D004574 ORTHO05D005612 2.3e-32 143.7 299 38.1
Dinv42910 Davidia involucrata HOM05D004574 ORTHO05D005612 4.4e-28 129.4 151 48.3
Dinv43191 Davidia involucrata HOM05D004574 ORTHO05D005612 4.4e-28 129.4 151 48.3
SHI03242 Sapria himalayana HOM05D004574 ORTHO05D005612 1.0e-24 118.2 257 38.5
SEGI_33529 Sequoiadendron giganteum HOM05D004574 ORTHO05D005612 1.7e-24 117.5 278 36.7
AagrBONN_evm.TU.Sc2ySwM_340.493 Anthoceros agrestis HOM05D004574 ORTHO05D005612 5.2e-21 105.9 178 39.9
Pp3c15_19210 Physcomitrium patens HOM05D004574 ORTHO05D005612 3.4e-20 103.2 271 32.5
Pp3c15_19211 Physcomitrium patens HOM05D004574 ORTHO05D005612 3.4e-20 103.2 271 32.5
CSS0049430 Camellia sinensis var. sinensis HOM05D004574 ORTHO05D005612 4.1e-18 96.3 72 68.1
Mapoly0074s0045 Marchantia polymorpha HOM05D004574 ORTHO05D005612 9.2e-18 95.1 295 31.9
MELO3C010259.2 Cucumis melo HOM05D004574 ORTHO05D005612 1.2e-17 94.7 127 46.5
VMungo1215G3011 Vigna mungo HOM05D004574 ORTHO05D005612 1.2e-17 94.7 167 40.7
ECA247G1966 Erigeron canadensis HOM05D000475 ORTHO05D000343 3.5e-17 93.2 94 55.3
VMungo1215G1435 Vigna mungo HOM05D004574 ORTHO05D005612 7.8e-17 92.0 171 41.5
MBI06_g17844_MAGBIO Magnolia biondii HOM05D000188 ORTHO05D000362 1.1e-15 88.2 95 52.6
Dinv42911 Davidia involucrata HOM05D004574 ORTHO05D005612 1.5e-12 77.8 48 79.2
Dinv43190 Davidia involucrata HOM05D004574 ORTHO05D005612 1.5e-12 77.8 48 79.2
FAN28G0742 Fragaria x ananassa HOM05D004574 ORTHO05D005612 2.6e-12 77.0 149 40.3
BolC1t05428H Brassica oleracea HOM05D004574 ORTHO05D005612 6.4e-11 72.4 124 41.9
MCO14G075 Micromonas commoda HOM05D004574 ORTHO05D005612 2.1e-09 67.4 50 56.0
CBR_g21811 Chara braunii HOM05D004574 ORTHO05D005612 2.7e-09 67.0 53 60.4
HanXRQChr15g0463941 Helianthus annuus HOM05D002899 ORTHO05D003850 7.8e-09 65.5 185 34.1
Mapoly0046s0040 Marchantia polymorpha HOM05D004574 ORTHO05D010792 2.3e-08 63.9 93 38.7
FAN19G2474 Fragaria x ananassa HOM05D004574 ORTHO05D005612 3.0e-08 63.5 37 81.1
PRCOL_00003671 Prasinoderma coloniale HOM05D002899 ORTHO05D003850 3.9e-08 63.2 69 46.4
MSTRG.8559 Avicennia marina HOM05D002899 ORTHO05D003850 8.6e-08 62.0 213 31.0
MCO07G248 Micromonas commoda HOM05D004574 ORTHO05D005612 1.1e-07 61.6 71 49.3
Rhsim06G0232100 Rhododendron simsii HOM05D002899 ORTHO05D003850 1.1e-07 61.6 86 46.5
Actinidia08787 Actinidia chinensis HOM05D002899 ORTHO05D003850 1.5e-07 61.2 80 46.2
ClCG02G007900 Citrullus lanatus HOM05D002899 ORTHO05D003850 1.9e-07 60.8 89 42.7
Cc05_g11170 Coffea canephora HOM05D002899 ORTHO05D003850 1.9e-07 60.8 84 42.9
TAR633G0361 Trochodendron aralioides HOM05D002899 ORTHO05D003850 3.3e-07 60.1 91 42.9
PGR142G0302 Punica granatum HOM05D002899 ORTHO05D003850 5.6e-07 59.3 81 40.7
unitig_21.g20691 Utricularia gibba HOM05D002899 ORTHO05D003850 5.6e-07 59.3 181 32.6
DCAR_022992 Daucus carota HOM05D002899 ORTHO05D003850 7.3e-07 58.9 186 32.3
Eucgr.L01317 Eucalyptus grandis HOM05D004574 ORTHO05D005612 9.5e-07 58.5 32 84.4
Lj9C24T10 Lonicera japonica HOM05D002899 ORTHO05D003850 9.5e-07 58.5 183 30.1
THA.LOC104805726 Tarenaya hassleriana HOM05D002899 ORTHO05D003850 9.5e-07 58.5 202 28.2
Cre09.g388986 Chlamydomonas reinhardtii HOM05D004574 ORTHO05D005612 1.2e-06 58.2 59 45.8
MBI02_g25679_MAGBIO Magnolia biondii HOM05D002899 ORTHO05D003850 1.2e-06 58.2 77 41.6
PRCOL_00005204 Prasinoderma coloniale HOM05D004574 ORTHO05D005612 1.2e-06 58.2 115 39.1
CSS0044416 Camellia sinensis var. sinensis HOM05D002899 ORTHO05D003850 2.1e-06 57.4 53 50.9
Lj5P331T27 Lonicera japonica HOM05D002899 ORTHO05D003850 2.8e-06 57.0 122 33.6
MCO06G176 Micromonas commoda HOM05D002899 ORTHO05D003850 2.8e-06 57.0 81 35.8
Oeu028990.1 Olea europaea HOM05D002899 ORTHO05D003850 2.8e-06 57.0 183 31.1
SGA_v2.0_scaffold39G15236 Striga asiatica HOM05D002899 ORTHO05D003850 2.8e-06 57.0 82 40.2
MELO3C024757.2 Cucumis melo HOM05D002899 ORTHO05D003850 3.6e-06 56.6 182 30.8
Dinv04696 Davidia involucrata HOM05D002899 ORTHO05D003850 3.6e-06 56.6 87 42.5
Gorai.011G214400 Gossypium raimondii HOM05D002899 ORTHO05D003850 3.6e-06 56.6 133 33.8
Nitab4.5_0009225g0010 Nicotiana tabacum HOM05D002899 ORTHO05D003850 3.6e-06 56.6 229 28.8
Solyc10g005990.4 Solanum lycopersicum HOM05D002899 ORTHO05D003850 3.6e-06 56.6 89 38.2
Sopen10g001950 Solanum pennellii HOM05D002899 ORTHO05D003850 3.6e-06 56.6 89 38.2
THA.LOC104823791 Tarenaya hassleriana HOM05D002899 ORTHO05D003850 3.6e-06 56.6 87 40.2
CsaV3_2G035840 Cucumis sativus L. HOM05D002899 ORTHO05D003850 4.7e-06 56.2 184 31.5
MD15G1445100 Malus domestica HOM05D002899 ORTHO05D003850 4.7e-06 56.2 198 30.3
Atru.chr12.1814 Acer truncatum HOM05D002899 ORTHO05D003850 6.2e-06 55.8 84 42.9
Atru.chr6.914 Acer truncatum HOM05D002899 ORTHO05D003850 6.2e-06 55.8 84 41.7
Manes.09G130600 Manihot esculenta HOM05D002899 ORTHO05D003850 6.2e-06 55.8 81 40.7
Sabra19G0053900 Salix brachista HOM05D002899 ORTHO05D003850 6.2e-06 55.8 143 33.6
Sc06g0010130 Simmondsia chinensis HOM05D002899 ORTHO05D003850 6.2e-06 55.8 85 41.2
Sc09g0008520 Simmondsia chinensis HOM05D002899 ORTHO05D003850 6.2e-06 55.8 85 41.2
TAR375G0529 Trochodendron aralioides HOM05D002899 ORTHO05D003850 6.2e-06 55.8 92 39.1
Peaxi162Scf01026g00001 Petunia axillaris HOM05D002899 ORTHO05D003850 8.1e-06 55.5 187 29.9
SEGI_19651 Sequoiadendron giganteum HOM05D008617 ORTHO05D010792 8.1e-06 55.5 50 50.0


User provided reference genes

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