Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.L02063 Eucalyptus grandis HOM05D005202 ORTHO05D006256 5.0e-81 304.3 145 100.0
Eucgr.J02214 Eucalyptus grandis HOM05D005202 ORTHO05D006256 8.6e-73 276.9 132 97.7
Eucgr.K00690 Eucalyptus grandis HOM05D005202 ORTHO05D006256 2.6e-69 265.4 147 88.4
Eucgr.I02534 Eucalyptus grandis HOM05D005202 ORTHO05D006256 5.8e-69 264.2 132 93.2
Potri.017G071700 Populus trichocarpa HOM05D005202 ORTHO05D006256 5.0e-65 251.1 133 88.0
Eucgr.A00139 Eucalyptus grandis HOM05D005202 ORTHO05D006256 4.3e-64 248.1 132 91.7
Manes.15G165900 Manihot esculenta HOM05D005202 ORTHO05D006256 4.3e-64 248.1 132 84.1
PGR083G1545 Punica granatum HOM05D005202 ORTHO05D006256 4.3e-64 248.1 129 86.0
PGSC0003DMG400031388 Solanum tuberosum HOM05D005202 ORTHO05D006256 4.3e-64 248.1 131 87.0
Cfa007414 Carpinus fangiana HOM05D005202 ORTHO05D006256 7.3e-64 247.3 132 84.8
Sabra17G0060900 Salix brachista HOM05D005202 ORTHO05D006256 9.5e-64 246.9 133 85.7
Ciclev10016926m.g Citrus clementina HOM05D005202 ORTHO05D006256 2.8e-63 245.4 132 83.3
CSS0005158 Camellia sinensis var. sinensis HOM05D005202 ORTHO05D006256 4.7e-63 244.6 132 83.3
Dinv33479 Davidia involucrata HOM05D005202 ORTHO05D006256 4.7e-63 244.6 132 83.3
CSS0034411 Camellia sinensis var. sinensis HOM05D005202 ORTHO05D006256 8.1e-63 243.8 132 83.3
TWI36G0007 Tripterygium wilfordii HOM05D005202 ORTHO05D006256 8.1e-63 243.8 132 83.3
Cc07_g02070 Coffea canephora HOM05D005202 ORTHO05D006256 1.4e-62 243.0 132 81.1
Solyc12g062860.2 Solanum lycopersicum HOM05D005202 ORTHO05D006256 1.8e-62 242.7 131 84.7
Gohir.A05G358600 Gossypium hirsutum HOM05D005202 ORTHO05D006256 2.3e-62 242.3 131 84.0
Thecc.04G011400 Theobroma cacao HOM05D005202 ORTHO05D006256 2.3e-62 242.3 131 83.2
Nn4g22761 Nelumbo nucifera HOM05D005202 ORTHO05D006256 4.0e-62 241.5 132 81.8
Prupe.3G286400 Prunus persica HOM05D005202 ORTHO05D006256 4.0e-62 241.5 131 84.7
RcHm_v2.0_Chr2g0172261 Rosa chinensis HOM05D005202 ORTHO05D006256 4.0e-62 241.5 127 88.2
Nitab4.5_0004321g0030 Nicotiana tabacum HOM05D005202 ORTHO05D006256 5.2e-62 241.1 132 84.1
Sopen12g026620 Solanum pennellii HOM05D005202 ORTHO05D006256 6.8e-62 240.7 131 84.7
Gorai.012G062300 Gossypium raimondii HOM05D005202 ORTHO05D006256 8.9e-62 240.4 131 84.0
Oeu004721.1 Olea europaea HOM05D005202 ORTHO05D006256 1.2e-61 240.0 132 82.6
THA.LOC104821081 Tarenaya hassleriana HOM05D005202 ORTHO05D006256 1.5e-61 239.6 132 81.8
TWI12G1060 Tripterygium wilfordii HOM05D005202 ORTHO05D006256 1.5e-61 239.6 132 81.8
FAN02G4573 Fragaria x ananassa HOM05D005202 ORTHO05D006256 2.0e-61 239.2 127 86.6
Nitab4.5_0003505g0010 Nicotiana tabacum HOM05D005202 ORTHO05D006256 2.0e-61 239.2 132 83.3
Aa31LG11G14780 Aethionema arabicum HOM05D005202 ORTHO05D006256 3.4e-61 238.4 132 81.1
CSS0004448 Camellia sinensis var. sinensis HOM05D005202 ORTHO05D006256 4.4e-61 238.0 132 81.8
CANSAT64G1846 Cannabis sativa HOM05D005202 ORTHO05D006256 4.4e-61 238.0 132 80.3
Duzib147G1022 Durio zibethinus HOM05D005202 ORTHO05D006256 4.4e-61 238.0 131 81.7
CAN.G76.9 Capsicum annuum HOM05D005202 ORTHO05D006256 5.8e-61 237.7 131 82.4
FvH4_6g50880 Fragaria vesca HOM05D005202 ORTHO05D006256 9.9e-61 236.9 127 85.8
Gohir.D04G055500 Gossypium hirsutum HOM05D005202 ORTHO05D006256 9.9e-61 236.9 131 83.2
MD09G1031200 Malus domestica HOM05D005202 ORTHO05D006256 9.9e-61 236.9 131 84.0
BolC9t59084H Brassica oleracea HOM05D005202 ORTHO05D006256 1.7e-60 236.1 132 80.3
MBI10_g06752_MAGBIO Magnolia biondii HOM05D005202 ORTHO05D006256 1.7e-60 236.1 129 80.6
MBI10_g30090_MAGBIO Magnolia biondii HOM05D005202 ORTHO05D006256 1.7e-60 236.1 129 80.6
Hma1.2p1_0993F.1_g245390 Hydrangea macrophylla HOM05D005202 ORTHO05D006256 2.9e-60 235.3 141 75.2
BraA10t44463Z Brassica rapa HOM05D005202 ORTHO05D006256 4.9e-60 234.6 132 79.5
Thhalv10014824m.g Eutrema salsugineum HOM05D005202 ORTHO05D006256 6.4e-60 234.2 132 79.5
C09p62460 Brassica napus HOM05D005202 ORTHO05D006256 1.1e-59 233.4 132 78.8
AL6G25450 Arabidopsis lyrata HOM05D005202 ORTHO05D006256 1.4e-59 233.0 132 78.8
MSTRG.3164 Avicennia marina HOM05D005202 ORTHO05D006256 1.4e-59 233.0 130 79.2
MD17G1033100 Malus domestica HOM05D005202 ORTHO05D006256 1.4e-59 233.0 131 82.4
QL02p075974 Quercus lobata HOM05D005202 ORTHO05D006256 1.4e-59 233.0 130 80.8
Hund28362 Selenicereus undatus HOM05D005202 ORTHO05D006256 1.4e-59 233.0 128 81.2
Hund28366 Selenicereus undatus HOM05D005202 ORTHO05D006256 1.4e-59 233.0 128 81.2
vmacro18257 Vaccinium macrocarpon HOM05D005202 ORTHO05D006256 1.4e-59 233.0 130 81.5
Carub.0006s1285 Capsella rubella HOM05D005202 ORTHO05D006256 1.9e-59 232.6 132 78.8
Sp6g29360 Schrenkiella parvula HOM05D005202 ORTHO05D006256 1.9e-59 232.6 132 79.5
Actinidia35750 Actinidia chinensis HOM05D005202 ORTHO05D006256 3.2e-59 231.9 131 81.7
AT5G14680 Arabidopsis thaliana HOM05D005202 ORTHO05D006256 4.1e-59 231.5 132 78.0
ClCG09G019040 Citrullus lanatus HOM05D005202 ORTHO05D006256 4.1e-59 231.5 132 80.3
Actinidia16935 Actinidia chinensis HOM05D005202 ORTHO05D006256 5.4e-59 231.1 131 80.9
MELO3C021552.2 Cucumis melo HOM05D005202 ORTHO05D006256 5.4e-59 231.1 132 80.3
Peaxi162Scf00700g00531 Petunia axillaris HOM05D005202 ORTHO05D006256 7.1e-59 230.7 146 73.3
GSVIVG01032456001 Vitis vinifera HOM05D005202 ORTHO05D006256 7.1e-59 230.7 131 80.2
CARHR198630 Cardamine hirsuta HOM05D005202 ORTHO05D006256 9.2e-59 230.3 132 78.8
Gohir.A07G221300 Gossypium hirsutum HOM05D005202 ORTHO05D006256 9.2e-59 230.3 131 79.4
HanXRQChr09g0266091 Helianthus annuus HOM05D005202 ORTHO05D006256 1.2e-58 229.9 132 77.3
AUR62037593 Chenopodium quinoa HOM05D005202 ORTHO05D006256 2.1e-58 229.2 128 78.1
Gorai.001G263000 Gossypium raimondii HOM05D005202 ORTHO05D006256 2.1e-58 229.2 131 77.9
SGA_v2.0_scaffold30G12451 Striga asiatica HOM05D005202 ORTHO05D006256 2.7e-58 228.8 128 78.9
TAR629G0682 Trochodendron aralioides HOM05D005202 ORTHO05D006256 3.5e-58 228.4 132 78.0
Glyma.05G006300 Glycine max HOM05D005202 ORTHO05D006256 4.6e-58 228.0 132 77.3
AUR62019615 Chenopodium quinoa HOM05D005202 ORTHO05D006256 7.8e-58 227.3 128 77.3
Sed0011143 Sechium edule HOM05D005202 ORTHO05D006256 7.8e-58 227.3 132 78.0
Rhsim08G0053600 Rhododendron simsii HOM05D005202 ORTHO05D006256 1.3e-57 226.5 147 73.5
Glyma.19G006700 Glycine max HOM05D005202 ORTHO05D006256 1.7e-57 226.1 132 76.5
Gohir.D07G228000 Gossypium hirsutum HOM05D005202 ORTHO05D006256 1.7e-57 226.1 131 77.1
Lsat_1_v5_gn_4_182780 Lactuca sativa HOM05D005202 ORTHO05D006256 1.7e-57 226.1 132 75.8
arahy.Tifrunner.gnm1.ann1.GIFS38 Arachis hypogaea HOM05D005202 ORTHO05D006256 2.3e-57 225.7 130 76.9
arahy.Tifrunner.gnm1.ann1.RS8E34 Arachis hypogaea HOM05D005202 ORTHO05D006256 2.3e-57 225.7 130 76.9
Ah.04g164090 Amaranthus hybridus HOM05D005202 ORTHO05D006256 3.9e-57 224.9 128 77.3
Aqoxy3G01047 Aquilegia oxysepala HOM05D005202 ORTHO05D006256 5.1e-57 224.6 131 74.8
VMungo0464G0124 Vigna mungo HOM05D005202 ORTHO05D006256 5.1e-57 224.6 132 77.3
Migut.K01375 Erythranthe guttata HOM05D005202 ORTHO05D006256 1.1e-56 223.4 130 76.9
EL10Ac4g08394 Beta vulgaris HOM05D005202 ORTHO05D006256 1.5e-56 223.0 128 75.8
CiPaw.03G039500 Carya illinoinensis HOM05D005202 ORTHO05D006256 2.5e-56 222.2 132 78.8
CsaV3_5G027320 Cucumis sativus L. HOM05D005202 ORTHO05D006256 3.3e-56 221.9 132 76.5
Phvul.004G012200 Phaseolus vulgaris HOM05D005202 ORTHO05D006256 4.3e-56 221.5 132 75.8
Os02g0707900 Oryza sativa ssp. japonica HOM05D005202 ORTHO05D006256 1.6e-55 219.5 129 76.0
Sed0015898 Sechium edule HOM05D005202 ORTHO05D006256 1.6e-55 219.5 132 75.0
Zm00001eb188520 Zea mays HOM05D005202 ORTHO05D006256 2.8e-55 218.8 128 75.0
BcaC05g30411 Brassica carinata HOM05D005202 ORTHO05D006256 3.6e-55 218.4 132 74.2
Medtr6g006190 Medicago truncatula HOM05D005202 ORTHO05D006256 4.7e-55 218.0 132 75.0
Lju41C36T14 Lonicera japonica HOM05D005202 ORTHO05D006256 1.4e-54 216.5 178 60.1
PSO541G3927 Papaver somniferum HOM05D005202 ORTHO05D006256 1.8e-54 216.1 126 74.6
C09p75070 Brassica napus HOM05D005202 ORTHO05D006256 4.0e-54 214.9 132 72.7
BolC5t35157H Brassica oleracea HOM05D005202 ORTHO05D006256 4.0e-54 214.9 132 72.7
CARHR075410 Cardamine hirsuta HOM05D005202 ORTHO05D006256 4.0e-54 214.9 132 74.2
Aa31LG5G10660 Aethionema arabicum HOM05D005202 ORTHO05D006256 6.8e-54 214.2 132 73.5
PSO781G0101 Papaver somniferum HOM05D005202 ORTHO05D006256 6.8e-54 214.2 126 73.8
Lalb_Chr21g0319511 Lupinus albus HOM05D005202 ORTHO05D006256 1.2e-53 213.4 127 74.8
Sp3g00530 Schrenkiella parvula HOM05D005202 ORTHO05D006256 2.6e-53 212.2 132 72.0
AT3G01520 Arabidopsis thaliana HOM05D005202 ORTHO05D006256 3.4e-53 211.8 132 72.7
A10p23990 Brassica napus HOM05D005202 ORTHO05D006256 5.8e-53 211.1 138 73.2
Lj2g0023587 Lotus japonicus HOM05D005202 ORTHO05D006256 5.8e-53 211.1 127 70.1
ECA232G2104 Erigeron canadensis HOM05D005202 ORTHO05D006256 9.9e-53 210.3 158 63.3
ATR0730G149 Amborella trichopoda HOM05D005202 ORTHO05D006256 1.3e-52 209.9 128 74.2
TPR.G35369 Trifolium pratense HOM05D005202 ORTHO05D006256 1.3e-52 209.9 131 70.2
Ah.06g185650 Amaranthus hybridus HOM05D005202 ORTHO05D006256 2.9e-52 208.8 173 58.4
A05p44480 Brassica napus HOM05D005202 ORTHO05D006256 3.8e-52 208.4 132 72.7
BraA05t23208Z Brassica rapa HOM05D005202 ORTHO05D006256 3.8e-52 208.4 132 72.7
HPP92_026388 Vanilla planifolia HOM05D005202 ORTHO05D006256 3.8e-52 208.4 129 70.5
BcaC05g30450 Brassica carinata HOM05D005202 ORTHO05D006256 6.4e-52 207.6 132 72.7
Ca_04185_v3 Cicer arietinum L. HOM05D005202 ORTHO05D006256 8.4e-52 207.2 127 72.4
Thhalv10021628m.g Eutrema salsugineum HOM05D005202 ORTHO05D006256 1.1e-51 206.8 129 70.5
Carub.0003s0055 Capsella rubella HOM05D005202 ORTHO05D006256 2.4e-51 205.7 132 70.5
COL.COLO4_28999 Corchorus olitorius HOM05D005202 ORTHO05D006256 4.1e-51 204.9 131 72.5
SEGI_19649 Sequoiadendron giganteum HOM05D005202 ORTHO05D006256 3.0e-49 198.7 132 66.7
SEGI_07525 Sequoiadendron giganteum HOM05D005202 ORTHO05D006256 9.6e-48 193.7 129 68.2
unitig_746.g26547 Utricularia gibba HOM05D000160 ORTHO05D000496 2.1e-42 176.0 131 63.4
TPR.G24793 Trifolium pratense HOM05D005202 ORTHO05D006256 2.3e-41 172.6 129 64.3
Eucgr.E03331 Eucalyptus grandis HOM05D005202 ORTHO05D006256 2.4e-38 162.5 86 87.2
vmacro05838 Vaccinium macrocarpon HOM05D005202 ORTHO05D006256 2.6e-37 159.1 134 62.7
SMO144G0068 Selaginella moellendorffii HOM05D005202 ORTHO05D006256 8.4e-36 154.1 135 53.3
Mapoly0002s0027 Marchantia polymorpha HOM05D005202 ORTHO05D006256 1.9e-35 152.9 132 54.5
Eucgr.L03339 Eucalyptus grandis HOM05D005202 ORTHO05D006256 5.4e-35 151.4 69 100.0
Pp3c2_32540 Physcomitrium patens HOM05D005202 ORTHO05D006256 7.9e-34 147.5 128 50.8
Eucgr.K02131 Eucalyptus grandis HOM05D005202 ORTHO05D006256 1.8e-33 146.4 69 97.1
Pp3c11_4100 Physcomitrium patens HOM05D005202 ORTHO05D006256 4.3e-32 141.7 128 49.2
Atru.chr6.2224 Acer truncatum HOM05D005202 ORTHO05D006256 2.1e-31 139.4 73 83.6
Atru.chr6.2317 Acer truncatum HOM05D005169 ORTHO05D006256 2.1e-31 139.4 73 83.6
BcaC05g30413 Brassica carinata HOM05D005202 ORTHO05D006256 8.1e-31 137.5 124 54.8
Rhsim10G0020400 Rhododendron simsii HOM05D005169 ORTHO05D006256 2.4e-30 136.0 73 80.8
Sc03g0011080 Simmondsia chinensis HOM05D005202 ORTHO05D006256 2.6e-29 132.5 72 77.8
FAN05G3636 Fragaria x ananassa HOM05D005169 ORTHO05D006436 5.8e-29 131.3 72 80.6
Psat1g056560 Pisum sativum HOM05D005202 ORTHO05D006256 5.8e-29 131.3 132 51.5
MSTRG.24024 Avicennia marina HOM05D005202 ORTHO05D006256 1.3e-28 130.2 69 79.7
Atru.chr9.39 Acer truncatum HOM05D005202 ORTHO05D006256 2.9e-28 129.0 73 79.5
Haze_14688 Corylus avellana HOM05D005202 ORTHO05D006256 6.4e-28 127.9 84 70.2
Eucgr.K02076 Eucalyptus grandis HOM05D005202 ORTHO05D006256 2.1e-26 122.9 80 77.5
Cpa.g.sc3954.1 Carica papaya HOM05D005202 ORTHO05D006256 1.3e-23 113.6 59 86.4
CDE05G1594 Ceratophyllum demersum HOM05D005202 ORTHO05D006256 1.6e-23 113.2 73 69.9
DCAR_015052 Daucus carota HOM05D005202 ORTHO05D006256 1.4e-22 110.2 128 48.4
AL3G10630 Arabidopsis lyrata HOM05D005202 ORTHO05D006256 3.2e-19 99.0 56 75.0
SHI22285 Sapria himalayana HOM05D005202 ORTHO05D006256 1.1e-16 90.5 74 60.8
Cpa.g.sc272.2 Carica papaya HOM05D005202 ORTHO05D006256 1.0e-09 67.4 40 77.5
CDE09G0523 Ceratophyllum demersum HOM05D000483 ORTHO05D000158 5.1e-09 65.1 127 28.3
Hund07139 Selenicereus undatus HOM05D000483 ORTHO05D000158 5.1e-09 65.1 132 32.6
AUR62000674 Chenopodium quinoa HOM05D000483 ORTHO05D000158 2.5e-08 62.8 136 31.6
Hma1.2p1_0061F.1_g033720 Hydrangea macrophylla HOM05D000483 ORTHO05D000158 2.5e-08 62.8 130 32.3
Oeu034230.1 Olea europaea HOM05D000483 ORTHO05D000158 4.3e-08 62.0 132 29.5
SalBow8G4957 Salvia bowleyana HOM05D000483 ORTHO05D000158 4.3e-08 62.0 127 32.3
MSTRG.7659 Avicennia marina HOM05D000483 ORTHO05D000158 9.7e-08 60.8 132 32.6
AUR62005280 Chenopodium quinoa HOM05D000483 ORTHO05D000158 1.3e-07 60.5 135 30.4
SGA_v2.0_scaffold38G14944 Striga asiatica HOM05D000483 ORTHO05D000158 3.7e-07 58.9 131 30.5
CSS0022655 Camellia sinensis var. sinensis HOM05D000483 ORTHO05D000158 4.8e-07 58.5 136 29.4
CSS0022693 Camellia sinensis var. sinensis HOM05D000483 ORTHO05D000158 4.8e-07 58.5 136 29.4
HanXRQChr17g0567571 Helianthus annuus HOM05D000483 ORTHO05D000158 4.8e-07 58.5 133 27.1
PGR102G1756 Punica granatum HOM05D000483 ORTHO05D000158 4.8e-07 58.5 127 30.7
Sabra10G0093300 Salix brachista HOM05D000483 ORTHO05D000158 6.3e-07 58.2 136 30.9
HanXRQChr01g0026251 Helianthus annuus HOM05D000483 ORTHO05D000158 8.2e-07 57.8 138 29.7
CDE08G1069 Ceratophyllum demersum HOM05D000483 ORTHO05D000158 1.1e-06 57.4 127 26.0
Sabra08G0092600 Salix brachista HOM05D000483 ORTHO05D000158 1.1e-06 57.4 142 31.0
Dinv21070 Davidia involucrata HOM05D000483 ORTHO05D000158 1.4e-06 57.0 131 28.2
Eucgr.B03008 Eucalyptus grandis HOM05D000483 ORTHO05D000158 1.4e-06 57.0 127 31.5
MBI16_g34838_MAGBIO Magnolia biondii HOM05D000483 ORTHO05D000158 1.4e-06 57.0 127 29.9
TAR623G0227 Trochodendron aralioides HOM05D000483 ORTHO05D000158 1.4e-06 57.0 108 32.4
EL10Ac4g09818 Beta vulgaris HOM05D000483 ORTHO05D000158 1.8e-06 56.6 111 33.3
Cpa.g.sc65.41 Carica papaya HOM05D000483 ORTHO05D000158 1.8e-06 56.6 131 29.8
HanXRQChr01g0026261 Helianthus annuus HOM05D000483 ORTHO05D000158 1.8e-06 56.6 138 29.7
Carub.0002s1478 Capsella rubella HOM05D000483 ORTHO05D000158 2.4e-06 56.2 128 31.2
GSVIVG01011879001 Vitis vinifera HOM05D000483 ORTHO05D000158 2.4e-06 56.2 107 30.8
GSVIVG01011877001 Vitis vinifera HOM05D000483 ORTHO05D000158 3.1e-06 55.8 107 30.8
MSTRG.16405 Avicennia marina HOM05D000483 ORTHO05D000158 5.3e-06 55.1 136 25.0
ECA234G1173 Erigeron canadensis HOM05D000483 ORTHO05D000158 5.3e-06 55.1 132 25.8
Potri.008G121900 Populus trichocarpa HOM05D000483 ORTHO05D000158 5.3e-06 55.1 137 29.2
Nitab4.5_0021859g0010 Nicotiana tabacum HOM05D000483 ORTHO05D000158 6.9e-06 54.7 131 27.5


User provided reference genes

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