Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.I02512 Eucalyptus grandis HOM05D003513 ORTHO05D004660 7.1e-72 274.2 145 100.0
Eucgr.L02047 Eucalyptus grandis HOM05D003513 ORTHO05D004660 7.1e-72 274.2 145 100.0
TWI14G0477 Tripterygium wilfordii HOM05D003513 ORTHO05D004660 1.4e-30 137.1 146 54.8
Dinv17746 Davidia involucrata HOM05D003513 ORTHO05D004660 6.7e-30 134.8 150 53.3
Rhsim11G0147300 Rhododendron simsii HOM05D003513 ORTHO05D004660 4.4e-29 132.1 148 54.1
Atru.chr4.2879 Acer truncatum HOM05D003513 ORTHO05D004660 7.4e-29 131.3 149 53.0
vmacro01922 Vaccinium macrocarpon HOM05D003513 ORTHO05D004660 1.3e-28 130.6 151 53.6
MD05G1110900 Malus domestica HOM05D003513 ORTHO05D004660 4.8e-28 128.6 147 53.7
PGR042G0778 Punica granatum HOM05D003513 ORTHO05D004660 4.8e-28 128.6 147 51.7
COL.COLO4_17824 Corchorus olitorius HOM05D003513 ORTHO05D004660 1.1e-27 127.5 139 57.6
Prupe.8G155900 Prunus persica HOM05D003513 ORTHO05D004660 1.4e-27 127.1 131 58.0
Thecc.02G033900 Theobroma cacao HOM05D003513 ORTHO05D004660 3.1e-27 125.9 136 56.6
Duzib052G1139 Durio zibethinus HOM05D003513 ORTHO05D004660 7.0e-27 124.8 139 55.4
Duzib248G1448 Durio zibethinus HOM05D003513 ORTHO05D004660 7.0e-27 124.8 146 52.7
Sabra09G0063800 Salix brachista HOM05D003513 ORTHO05D004660 3.5e-26 122.5 143 47.6
Potri.009G082200 Populus trichocarpa HOM05D003513 ORTHO05D004660 7.7e-26 121.3 143 49.7
Cfa003376 Carpinus fangiana HOM05D003513 ORTHO05D004660 1.0e-25 120.9 146 52.7
Gohir.A03G213100 Gossypium hirsutum HOM05D003513 ORTHO05D004660 1.3e-25 120.6 137 55.5
Gohir.D02G234600 Gossypium hirsutum HOM05D003513 ORTHO05D004660 1.7e-25 120.2 137 56.2
Hma1.2p1_0661F.1_g197860 Hydrangea macrophylla HOM05D003513 ORTHO05D004660 1.7e-25 120.2 148 50.7
RcHm_v2.0_Chr6g0247131 Rosa chinensis HOM05D003513 ORTHO05D004660 1.7e-25 120.2 141 52.5
Cfa004752 Carpinus fangiana HOM05D003513 ORTHO05D004660 2.2e-25 119.8 147 53.1
CSS0016653 Camellia sinensis var. sinensis HOM05D003513 ORTHO05D004660 2.9e-25 119.4 152 50.0
TWI23G0398 Tripterygium wilfordii HOM05D003513 ORTHO05D004660 5.0e-25 118.6 146 50.7
Gorai.005G262600 Gossypium raimondii HOM05D003513 ORTHO05D004660 6.5e-25 118.2 140 55.0
CANSAT11G1387 Cannabis sativa HOM05D003513 ORTHO05D004660 8.5e-25 117.9 143 51.0
Manes.07G049900 Manihot esculenta HOM05D003513 ORTHO05D004660 1.9e-24 116.7 142 50.0
Actinidia02426 Actinidia chinensis HOM05D003513 ORTHO05D004660 2.5e-24 116.3 148 51.4
FAN15G2646 Fragaria x ananassa HOM05D003513 ORTHO05D004660 4.2e-24 115.5 141 50.4
FAN20G2897 Fragaria x ananassa HOM05D003513 ORTHO05D004660 4.2e-24 115.5 141 50.4
Hund24144 Selenicereus undatus HOM05D003513 ORTHO05D004660 4.2e-24 115.5 142 51.4
FAN24G3528 Fragaria x ananassa HOM05D003513 ORTHO05D004660 5.5e-24 115.2 141 51.1
MD10G1114400 Malus domestica HOM05D003513 ORTHO05D004660 5.5e-24 115.2 131 55.0
GSVIVG01036987001 Vitis vinifera HOM05D003513 ORTHO05D004660 7.2e-24 114.8 151 51.7
Oeu010478.1 Olea europaea HOM05D003513 ORTHO05D004660 1.2e-23 114.0 149 48.3
Sabra16G0180200 Salix brachista HOM05D003513 ORTHO05D004660 2.1e-23 113.2 143 47.6
Actinidia00338 Actinidia chinensis HOM05D003513 ORTHO05D004660 3.6e-23 112.5 147 55.8
FAN27G0638 Fragaria x ananassa HOM05D003513 ORTHO05D004660 4.7e-23 112.1 141 48.9
Migut.B00497 Erythranthe guttata HOM05D003513 ORTHO05D004660 8.0e-23 111.3 145 49.0
FvH4_2g02710 Fragaria vesca HOM05D003513 ORTHO05D004660 1.4e-22 110.5 141 50.4
MELO3C013317.2 Cucumis melo HOM05D003513 ORTHO05D004660 1.8e-22 110.2 144 47.2
Peaxi162Scf00016g03328 Petunia axillaris HOM05D003513 ORTHO05D004660 1.8e-22 110.2 149 49.0
Medtr2g010510 Medicago truncatula HOM05D003513 ORTHO05D004660 3.0e-22 109.4 141 49.6
Sc21g0000900 Simmondsia chinensis HOM05D003513 ORTHO05D004660 4.0e-22 109.0 136 54.4
Lj9A339T51 Lonicera japonica HOM05D003513 ORTHO05D004660 1.5e-21 107.1 150 50.0
CsaV3_7G001360 Cucumis sativus L. HOM05D003513 ORTHO05D004660 2.0e-21 106.7 143 51.0
ClCG02G003790 Citrullus lanatus HOM05D003513 ORTHO05D004660 2.6e-21 106.3 143 49.0
MSTRG.8971 Avicennia marina HOM05D003513 ORTHO05D004660 3.3e-21 105.9 139 50.4
QL11p027784 Quercus lobata HOM05D003513 ORTHO05D004660 4.4e-21 105.5 151 49.7
Ciclev10028868m.g Citrus clementina HOM05D003513 ORTHO05D004660 5.7e-21 105.1 141 48.9
TAR375G0591 Trochodendron aralioides HOM05D003513 ORTHO05D004660 5.7e-21 105.1 149 47.7
Sed0007617 Sechium edule HOM05D003513 ORTHO05D004660 9.7e-21 104.4 135 48.1
Lalb_Chr18g0060191 Lupinus albus HOM05D003513 ORTHO05D004660 2.2e-20 103.2 193 38.9
SalBow6G6243 Salvia bowleyana HOM05D003513 ORTHO05D004660 2.2e-20 103.2 140 47.9
EL10Ac4g09206 Beta vulgaris HOM05D003513 ORTHO05D004660 2.8e-20 102.8 161 47.2
Sopen01g048910 Solanum pennellii HOM05D003513 ORTHO05D004660 3.7e-20 102.4 148 48.0
Ca_00197_v3 Cicer arietinum L. HOM05D000871 ORTHO05D000770 4.8e-20 102.1 138 49.3
Solyc01g106560.4 Solanum lycopersicum HOM05D003513 ORTHO05D004660 6.3e-20 101.7 148 48.0
arahy.Tifrunner.gnm1.ann1.K4QFJX Arachis hypogaea HOM05D003513 ORTHO05D004660 1.4e-19 100.5 177 40.1
arahy.Tifrunner.gnm1.ann1.SQB86K Arachis hypogaea HOM05D003513 ORTHO05D004660 1.4e-19 100.5 177 40.1
Nitab4.5_0007763g0010 Nicotiana tabacum HOM05D003513 ORTHO05D004660 1.4e-19 100.5 148 45.9
Potri.001G287900 Populus trichocarpa HOM05D003513 ORTHO05D004660 1.4e-19 100.5 130 46.2
arahy.Tifrunner.gnm1.ann1.2E8PRH Arachis hypogaea HOM05D003513 ORTHO05D004660 1.8e-19 100.1 177 39.5
TPR.G22787 Trifolium pratense HOM05D003513 ORTHO05D004660 1.8e-19 100.1 134 50.7
MSTRG.8970 Avicennia marina HOM05D003513 ORTHO05D004660 2.4e-19 99.8 139 48.2
PGSC0003DMG400005104 Solanum tuberosum HOM05D003513 ORTHO05D004660 2.4e-19 99.8 148 46.6
Glyma.15G062000 Glycine max HOM05D003513 ORTHO05D004660 3.1e-19 99.4 191 40.8
Nitab4.5_0001477g0150 Nicotiana tabacum HOM05D003513 ORTHO05D004660 3.1e-19 99.4 148 47.3
Oeu059873.1 Olea europaea HOM05D003513 ORTHO05D004660 5.3e-19 98.6 148 42.6
PSO384G0236 Papaver somniferum HOM05D003513 ORTHO05D004660 1.6e-18 97.1 147 44.9
Cc02_g20350 Coffea canephora HOM05D003513 ORTHO05D004660 3.5e-18 95.9 149 46.3
SGA_v2.0_scaffold32G12967 Striga asiatica HOM05D003513 ORTHO05D004660 3.5e-18 95.9 149 45.0
MBI18_g04900_MAGBIO Magnolia biondii HOM05D003513 ORTHO05D004660 1.0e-17 94.4 147 46.9
Lj6g0027000 Lotus japonicus HOM05D003513 ORTHO05D004660 2.2e-17 93.2 182 37.9
Aa31LG8G12720 Aethionema arabicum HOM05D003513 ORTHO05D004660 2.9e-17 92.8 151 41.7
CiPaw.16G055200 Carya illinoinensis HOM05D003513 ORTHO05D004660 3.8e-17 92.4 143 45.5
Psat1g212080 Pisum sativum HOM05D003513 ORTHO05D004660 3.8e-17 92.4 126 51.6
PSO339G4304 Papaver somniferum HOM05D003513 ORTHO05D004660 6.5e-17 91.7 144 44.4
VMungo0540G2261 Vigna mungo HOM05D003513 ORTHO05D004660 6.5e-17 91.7 185 39.5
Glyma.13G253000 Glycine max HOM05D003513 ORTHO05D004660 8.5e-17 91.3 189 38.6
AL3G45960 Arabidopsis lyrata HOM05D003513 ORTHO05D004660 1.1e-16 90.9 145 44.8
CAN.G192.6 Capsicum annuum HOM05D003513 ORTHO05D004660 1.5e-16 90.5 148 44.6
Phvul.006G197800 Phaseolus vulgaris HOM05D003513 ORTHO05D004660 1.9e-16 90.1 173 41.6
Thhalv10021452m.g Eutrema salsugineum HOM05D003513 ORTHO05D004660 2.5e-16 89.7 141 42.6
MBI18_g12443_MAGBIO Magnolia biondii HOM05D003513 ORTHO05D004660 5.5e-16 88.6 144 45.8
Os07g0213400 Oryza sativa ssp. japonica HOM05D003513 ORTHO05D004660 5.5e-16 88.6 145 43.4
THA.LOC104807196 Tarenaya hassleriana HOM05D003513 ORTHO05D004660 1.2e-15 87.4 132 46.2
Nn4g22684 Nelumbo nucifera HOM05D003513 ORTHO05D004660 1.6e-15 87.0 105 49.5
Sp3g05980 Schrenkiella parvula HOM05D003513 ORTHO05D004660 1.6e-15 87.0 146 42.5
unitig_0.g631 Utricularia gibba HOM05D003513 ORTHO05D004660 1.6e-15 87.0 140 46.4
Zm00001eb303370 Zea mays HOM05D003513 ORTHO05D004660 2.1e-15 86.7 149 42.3
SHI04900 Sapria himalayana HOM05D003513 ORTHO05D004660 8.0e-15 84.7 129 44.2
HanXRQChr17g0550541 Helianthus annuus HOM05D003513 ORTHO05D004660 2.3e-14 83.2 148 42.6
Zm00001eb325060 Zea mays HOM05D003513 ORTHO05D004660 5.2e-14 82.0 149 39.6
CARHR105270 Cardamine hirsuta HOM05D003513 ORTHO05D004660 6.8e-14 81.6 138 45.7
Atru.chr5.2163 Acer truncatum HOM05D003513 ORTHO05D004660 8.8e-14 81.3 84 56.0
CiPaw.05G024600 Carya illinoinensis HOM05D003513 ORTHO05D004660 8.8e-14 81.3 141 44.0
Lj6g0027758 Lotus japonicus HOM05D003513 ORTHO05D004660 1.2e-13 80.9 213 33.8
Lsat_1_v5_gn_7_84220 Lactuca sativa HOM05D003513 ORTHO05D004660 2.0e-13 80.1 144 38.2
Lj1g0004946 Lotus japonicus HOM05D003513 ORTHO05D004660 2.0e-13 80.1 142 41.5
ECA236G2279 Erigeron canadensis HOM05D003513 ORTHO05D004660 2.6e-13 79.7 145 42.1
arahy.Tifrunner.gnm1.ann1.C4ZNB5 Arachis hypogaea HOM05D003513 ORTHO05D004660 7.5e-13 78.2 182 34.1
TWI59G0638 Tripterygium wilfordii HOM05D003513 ORTHO05D004660 7.5e-13 78.2 85 55.3
Sp7g31420 Schrenkiella parvula HOM05D003513 ORTHO05D004660 2.2e-12 76.6 135 39.3
BraA03t12683Z Brassica rapa HOM05D003513 ORTHO05D004660 2.8e-12 76.3 99 48.5
DCAR_029853 Daucus carota HOM05D003513 ORTHO05D004660 2.8e-12 76.3 176 37.5
C03p42610 Brassica napus HOM05D003513 ORTHO05D004660 3.7e-12 75.9 147 38.8
Carub.0003s2847 Capsella rubella HOM05D003513 ORTHO05D004660 3.7e-12 75.9 135 40.7
BolC3t16531H Brassica oleracea HOM05D003513 ORTHO05D004660 6.3e-12 75.1 99 46.5
A03p35030 Brassica napus HOM05D003513 ORTHO05D004660 8.3e-12 74.7 99 47.5
ATR0681G195 Amborella trichopoda HOM05D003513 ORTHO05D004660 4.1e-11 72.4 195 39.5
AL7G17790 Arabidopsis lyrata HOM05D003513 ORTHO05D004660 5.4e-11 72.0 150 36.7
Aqoxy5G03939 Aquilegia oxysepala HOM05D003513 ORTHO05D004660 1.2e-10 70.9 146 41.8
CDE04G2077 Ceratophyllum demersum HOM05D000016 ORTHO05D000538 1.2e-10 70.9 126 37.3
Mapoly0037s0029 Marchantia polymorpha HOM05D003513 ORTHO05D004660 1.6e-10 70.5 56 66.1
Cpa.g.sc20.72 Carica papaya HOM05D003513 ORTHO05D004660 2.7e-10 69.7 84 48.8
HPP92_025257 Vanilla planifolia HOM05D003513 ORTHO05D004660 7.7e-10 68.2 141 37.6
BcaC06g33105 Brassica carinata HOM05D005554 ORTHO05D021652 1.7e-09 67.0 37 81.1
C01p05020 Brassica napus HOM05D003513 ORTHO05D004660 2.9e-09 66.2 151 35.8
CDE07G1727 Ceratophyllum demersum HOM05D003513 ORTHO05D004660 5.0e-09 65.5 164 36.0
BcaB07g32937 Brassica carinata HOM05D003513 ORTHO05D004660 6.5e-09 65.1 106 44.3
SEGI_16177 Sequoiadendron giganteum HOM05D003513 ORTHO05D004660 6.5e-09 65.1 176 37.5
Dinv03362 Davidia involucrata HOM05D003513 ORTHO05D004660 1.5e-08 63.9 84 45.2
BcaC09g52179 Brassica carinata HOM05D003513 ORTHO05D004660 2.5e-08 63.2 153 34.6
BolC1t00484H Brassica oleracea HOM05D003513 ORTHO05D004660 2.5e-08 63.2 153 34.6
BcaB06g26524 Brassica carinata HOM05D005554 ORTHO05D021652 5.5e-08 62.0 36 77.8
HPP92_011751 Vanilla planifolia HOM05D003513 ORTHO05D004660 9.5e-08 61.2 161 34.2
SEGI_38183 Sequoiadendron giganteum HOM05D003513 ORTHO05D004660 1.6e-07 60.5 180 37.8
AUR62005013 Chenopodium quinoa HOM05D003513 ORTHO05D004660 2.1e-07 60.1 146 37.0
Pp3c17_21630 Physcomitrium patens HOM05D003513 ORTHO05D004660 3.6e-07 59.3 146 37.0
BraA01t00446Z Brassica rapa HOM05D003513 ORTHO05D004660 1.0e-06 57.8 130 37.7
SMO119G0189 Selaginella moellendorffii HOM05D003513 ORTHO05D004660 1.0e-06 57.8 102 37.3
AT4G33690 Arabidopsis thaliana HOM05D003513 ORTHO05D004660 4.0e-06 55.8 127 35.4


User provided reference genes

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