Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.L01895 Eucalyptus grandis HOM05D001101 ORTHO05D000893 1.9e-63 245.7 132 100.0
Eucgr.F03283 Eucalyptus grandis HOM05D001101 ORTHO05D000893 3.6e-62 241.5 129 100.0
Dinv18380 Davidia involucrata HOM05D001101 ORTHO05D000893 7.6e-44 180.6 133 70.7
QL08p025698 Quercus lobata HOM05D001101 ORTHO05D000893 1.7e-43 179.5 131 71.8
CiPaw.12G112600 Carya illinoinensis HOM05D001101 ORTHO05D000893 1.1e-42 176.8 131 71.0
Gohir.A04G043400 Gossypium hirsutum HOM05D001101 ORTHO05D000893 9.3e-42 173.7 131 67.9
Potri.001G387500 Populus trichocarpa HOM05D001101 ORTHO05D000893 1.2e-41 173.3 131 66.4
Gohir.D05G340200 Gossypium hirsutum HOM05D001101 ORTHO05D000893 3.5e-41 171.8 131 67.2
Gorai.009G366600 Gossypium raimondii HOM05D001101 ORTHO05D000893 3.5e-41 171.8 131 67.2
Manes.15G096600 Manihot esculenta HOM05D001101 ORTHO05D000893 1.8e-40 169.5 129 68.2
Thecc.07G126600 Theobroma cacao HOM05D001101 ORTHO05D000893 2.3e-40 169.1 132 68.2
Cpa.g.sc77.33 Carica papaya HOM05D001101 ORTHO05D000893 3.0e-40 168.7 133 66.9
Actinidia18809 Actinidia chinensis HOM05D001101 ORTHO05D000893 3.9e-40 168.3 135 65.9
Sabra16G0254800 Salix brachista HOM05D001101 ORTHO05D000893 3.9e-40 168.3 131 65.6
Manes.03G099900 Manihot esculenta HOM05D001101 ORTHO05D000893 8.7e-40 167.2 131 64.1
COL.COLO4_17509 Corchorus olitorius HOM05D001101 ORTHO05D000893 1.5e-39 166.4 131 70.2
Prupe.4G160200 Prunus persica HOM05D001101 ORTHO05D000893 4.3e-39 164.9 131 67.9
Potri.011G107800 Populus trichocarpa HOM05D001101 ORTHO05D000893 9.7e-39 163.7 131 64.9
Sabra11G0095800 Salix brachista HOM05D001101 ORTHO05D000893 9.7e-39 163.7 131 65.6
CSS0019453 Camellia sinensis var. sinensis HOM05D001101 ORTHO05D000893 6.3e-38 161.0 133 63.9
Duzib213G1057 Durio zibethinus HOM05D001101 ORTHO05D000893 5.3e-37 157.9 131 64.1
CSS0031512 Camellia sinensis var. sinensis HOM05D001101 ORTHO05D000893 4.5e-36 154.8 137 62.0
Haze_09306 Corylus avellana HOM05D001101 ORTHO05D000893 7.6e-36 154.1 133 66.2
Cfa019545 Carpinus fangiana HOM05D001101 ORTHO05D000893 1.7e-35 152.9 132 64.4
Rhsim06G0210100 Rhododendron simsii HOM05D001101 ORTHO05D000893 2.9e-35 152.1 134 62.7
MELO3C016123.2 Cucumis melo HOM05D001101 ORTHO05D000893 6.5e-35 151.0 133 63.2
FvH4_3g18140 Fragaria vesca HOM05D001101 ORTHO05D000893 6.5e-35 151.0 132 62.9
FAN16G1275 Fragaria x ananassa HOM05D001101 ORTHO05D000893 6.5e-35 151.0 132 62.9
Hma1.2p1_1872F.1_g306120 Hydrangea macrophylla HOM05D001101 ORTHO05D000893 8.5e-35 150.6 134 62.7
FAN11G2831 Fragaria x ananassa HOM05D001101 ORTHO05D000893 1.4e-34 149.8 132 62.1
Lalb_Chr03g0031231 Lupinus albus HOM05D001101 ORTHO05D000893 1.9e-34 149.4 129 59.7
Hma1.2p1_1650F.1_g295650 Hydrangea macrophylla HOM05D001101 ORTHO05D000893 2.5e-34 149.1 134 61.9
RcHm_v2.0_Chr5g0030571 Rosa chinensis HOM05D001101 ORTHO05D000893 3.2e-34 148.7 132 62.1
vmacro11953 Vaccinium macrocarpon HOM05D001101 ORTHO05D000893 4.2e-34 148.3 143 58.0
Ciclev10019902m.g Citrus clementina HOM05D001101 ORTHO05D000893 5.5e-34 147.9 132 62.1
Lj3g0027156 Lotus japonicus HOM05D001101 ORTHO05D000893 5.5e-34 147.9 134 62.7
TWI39G0632 Tripterygium wilfordii HOM05D001101 ORTHO05D000893 1.2e-33 146.7 131 61.8
TAR626G0991 Trochodendron aralioides HOM05D001101 ORTHO05D000893 2.1e-33 146.0 131 59.5
ClCG07G010190 Citrullus lanatus HOM05D001101 ORTHO05D000893 6.1e-33 144.4 132 60.6
DCAR_013271 Daucus carota HOM05D001101 ORTHO05D000893 6.1e-33 144.4 133 60.2
SalBow8G2079 Salvia bowleyana HOM05D001101 ORTHO05D000893 6.1e-33 144.4 134 60.4
TWI38G2134 Tripterygium wilfordii HOM05D001101 ORTHO05D000893 1.0e-32 143.7 131 61.1
Nitab4.5_0000788g0050 Nicotiana tabacum HOM05D001101 ORTHO05D000893 1.8e-32 142.9 132 62.9
SalBow1G6953 Salvia bowleyana HOM05D001101 ORTHO05D000893 1.8e-32 142.9 134 59.7
CiPaw.11G158700 Carya illinoinensis HOM05D001101 ORTHO05D000893 2.3e-32 142.5 131 61.1
Nitab4.5_0016997g0010 Nicotiana tabacum HOM05D001101 ORTHO05D000893 2.3e-32 142.5 132 62.1
FAN21G1665 Fragaria x ananassa HOM05D001101 ORTHO05D000893 3.0e-32 142.1 132 60.6
Sed0014809 Sechium edule HOM05D001101 ORTHO05D000893 3.0e-32 142.1 133 60.9
FAN25G0535 Fragaria x ananassa HOM05D001101 ORTHO05D000893 3.9e-32 141.7 132 60.6
TPR.G16052 Trifolium pratense HOM05D001101 ORTHO05D000893 6.7e-32 141.0 135 58.5
Ca_06629_v3 Cicer arietinum L. HOM05D001101 ORTHO05D000893 1.1e-31 140.2 133 60.2
GSVIVG01014170001 Vitis vinifera HOM05D001101 ORTHO05D000893 1.5e-31 139.8 134 60.4
Oeu031024.1 Olea europaea HOM05D001101 ORTHO05D000893 3.3e-31 138.7 133 59.4
CsaV3_4G008130 Cucumis sativus L. HOM05D001101 ORTHO05D000893 1.3e-30 136.7 133 60.9
arahy.Tifrunner.gnm1.ann1.I5PA0N Arachis hypogaea HOM05D001101 ORTHO05D000893 2.8e-30 135.6 144 56.9
arahy.Tifrunner.gnm1.ann1.R550IY Arachis hypogaea HOM05D001101 ORTHO05D000893 2.8e-30 135.6 144 56.9
Lj8A147G49 Lonicera japonica HOM05D001101 ORTHO05D000893 3.7e-30 135.2 134 59.0
MSTRG.6684 Avicennia marina HOM05D001101 ORTHO05D000893 6.3e-30 134.4 133 57.1
Cc05_g10950 Coffea canephora HOM05D001101 ORTHO05D000893 6.3e-30 134.4 136 59.6
Glyma.13G268500 Glycine max HOM05D001101 ORTHO05D000893 8.2e-30 134.0 149 51.7
Lj3g0007321 Lotus japonicus HOM05D001101 ORTHO05D000893 1.1e-29 133.7 135 60.7
Peaxi162Scf00111g01465 Petunia axillaris HOM05D001101 ORTHO05D000893 1.4e-29 133.3 131 58.8
Medtr8g058280 Medicago truncatula HOM05D001101 ORTHO05D000893 5.3e-29 131.3 135 57.8
Phvul.005G081000 Phaseolus vulgaris HOM05D001101 ORTHO05D000893 1.5e-28 129.8 161 48.4
Nn3g21084 Nelumbo nucifera HOM05D001101 ORTHO05D000893 3.4e-28 128.6 134 54.5
CANSAT35G0774 Cannabis sativa HOM05D001101 ORTHO05D000893 7.7e-28 127.5 140 56.4
Sc03g0010600 Simmondsia chinensis HOM05D001101 ORTHO05D000893 1.0e-27 127.1 133 54.9
VMungo1080G1788 Vigna mungo HOM05D001101 ORTHO05D000893 1.7e-27 126.3 99 64.6
CAN.G375.25 Capsicum annuum HOM05D001101 ORTHO05D000893 2.2e-27 125.9 132 55.3
AUR62037563 Chenopodium quinoa HOM05D001101 ORTHO05D000893 2.9e-27 125.6 131 55.0
TAR627G0318 Trochodendron aralioides HOM05D001101 ORTHO05D000893 2.9e-27 125.6 137 52.6
Lalb_Chr20g0109211 Lupinus albus HOM05D001101 ORTHO05D000893 8.5e-27 124.0 114 57.9
AUR62019596 Chenopodium quinoa HOM05D001101 ORTHO05D000893 1.4e-26 123.2 138 53.6
Nn6g34473 Nelumbo nucifera HOM05D001101 ORTHO05D000893 1.9e-26 122.9 131 52.7
VMungo1127G0294 Vigna mungo HOM05D001101 ORTHO05D000893 3.2e-26 122.1 132 53.0
ECA236G1330 Erigeron canadensis HOM05D001101 ORTHO05D000893 4.7e-25 118.2 133 57.1
Sopen07g030570 Solanum pennellii HOM05D001101 ORTHO05D000893 4.7e-25 118.2 134 55.2
Ah.06g185540 Amaranthus hybridus HOM05D001101 ORTHO05D000893 6.1e-25 117.9 134 49.3
Solyc07g062300.3 Solanum lycopersicum HOM05D001101 ORTHO05D000893 1.8e-24 116.3 134 54.5
Psat0s2485g0080 Pisum sativum HOM05D001101 ORTHO05D000893 5.1e-24 114.8 135 51.9
MSTRG.14970 Avicennia marina HOM05D001101 ORTHO05D000893 3.3e-23 112.1 133 49.6
EL10Ac9g23028 Beta vulgaris HOM05D001101 ORTHO05D000893 3.3e-23 112.1 148 46.6
MBI07_g00455_MAGBIO Magnolia biondii HOM05D001101 ORTHO05D000893 9.7e-23 110.5 132 51.5
PGSC0003DMG400007097 Solanum tuberosum HOM05D001101 ORTHO05D000893 2.2e-22 109.4 134 53.0
unitig_747.g21588 Utricularia gibba HOM05D001101 ORTHO05D000893 2.8e-22 109.0 140 49.3
CDE10G0134 Ceratophyllum demersum HOM05D001101 ORTHO05D000893 8.2e-22 107.5 133 50.4
MBI06_g16699_MAGBIO Magnolia biondii HOM05D001101 ORTHO05D000893 8.2e-22 107.5 192 38.0
Os02g0234200 Oryza sativa ssp. japonica HOM05D001101 ORTHO05D000893 2.4e-21 105.9 131 48.9
Medtr2g075860 Medicago truncatula HOM05D001101 ORTHO05D000893 6.9e-21 104.4 134 50.7
SGA_v2.0_scaffold73G24397 Striga asiatica HOM05D001101 ORTHO05D000893 2.0e-20 102.8 138 48.6
Aqoxy1G01983 Aquilegia oxysepala HOM05D001101 ORTHO05D000893 5.9e-20 101.3 139 50.4
MELO3C025648.2 Cucumis melo HOM05D001101 ORTHO05D000893 1.0e-19 100.5 131 48.9
CsaV3_4G033000 Cucumis sativus L. HOM05D001101 ORTHO05D000893 1.9e-18 96.3 131 48.9
Actinidia35207 Actinidia chinensis HOM05D001101 ORTHO05D000893 1.6e-17 93.2 124 44.4
Aa31LG8G2070 Aethionema arabicum HOM05D001101 ORTHO05D000893 3.6e-17 92.0 132 47.0
MD11G1265700 Malus domestica HOM05D001101 ORTHO05D000893 3.0e-16 89.0 71 69.0
Sp3g13070 Schrenkiella parvula HOM05D001101 ORTHO05D000893 3.9e-16 88.6 137 50.4
HanXRQChr04g0108531 Helianthus annuus HOM05D001101 ORTHO05D000893 6.7e-16 87.8 132 45.5
AL3G27180 Arabidopsis lyrata HOM05D001101 ORTHO05D000893 8.8e-16 87.4 134 49.3
PSO675G9353 Papaver somniferum HOM05D001101 ORTHO05D000893 1.1e-15 87.0 137 43.8
BcaB04g20957 Brassica carinata HOM05D001101 ORTHO05D000893 2.0e-15 86.3 133 47.4
CARHR089800 Cardamine hirsuta HOM05D001101 ORTHO05D000893 2.6e-15 85.9 134 49.3
A03p39010 Brassica napus HOM05D001101 ORTHO05D000893 5.7e-15 84.7 138 48.6
ClCG11G017370 Citrullus lanatus HOM05D001101 ORTHO05D000893 5.7e-15 84.7 131 44.3
Thhalv10020396m.g Eutrema salsugineum HOM05D001101 ORTHO05D000893 7.4e-15 84.3 134 47.8
Sed0027959 Sechium edule HOM05D001101 ORTHO05D000893 7.4e-15 84.3 131 45.0
THA.LOC104815575 Tarenaya hassleriana HOM05D001101 ORTHO05D000893 7.4e-15 84.3 134 45.5
PGR031G1547 Punica granatum HOM05D001101 ORTHO05D000893 9.7e-15 84.0 142 47.2
PSO541G3246 Papaver somniferum HOM05D001101 ORTHO05D000893 6.3e-14 81.3 137 42.3
BraA03t13051Z Brassica rapa HOM05D001101 ORTHO05D000893 1.8e-13 79.7 136 46.3
AT3G14860 Arabidopsis thaliana HOM05D001101 ORTHO05D000893 1.2e-12 77.0 134 45.5
A01p38980 Brassica napus HOM05D001101 ORTHO05D000893 1.6e-12 76.6 133 46.6
BraA01t03944Z Brassica rapa HOM05D001101 ORTHO05D000893 1.6e-12 76.6 133 46.6
Zm00001eb239070 Zea mays HOM05D001101 ORTHO05D000893 2.0e-12 76.3 145 41.4
C03p47290 Brassica napus HOM05D001101 ORTHO05D000893 3.5e-12 75.5 135 45.9
BolC3t16997H Brassica oleracea HOM05D001101 ORTHO05D000893 3.5e-12 75.5 135 45.9
Carub.0003s1452 Capsella rubella HOM05D001101 ORTHO05D000893 2.2e-11 72.8 133 44.4
Hund10538 Selenicereus undatus HOM05D001101 ORTHO05D000893 3.8e-11 72.0 135 38.5
Lsat_1_v5_gn_7_102241 Lactuca sativa HOM05D001101 ORTHO05D000893 5.0e-11 71.6 143 42.0
C01p49590 Brassica napus HOM05D001101 ORTHO05D000893 1.9e-10 69.7 133 44.4
Glyma.12G231033 Glycine max HOM05D001101 ORTHO05D000893 1.9e-10 69.7 74 58.1
BolC1t04914H Brassica oleracea HOM05D001101 ORTHO05D000893 4.2e-10 68.6 133 43.6
BcaC09g48454 Brassica carinata HOM05D001101 ORTHO05D000893 7.2e-10 67.8 133 43.6
HPP92_020070 Vanilla planifolia HOM05D001101 ORTHO05D003060 1.6e-09 66.6 131 42.0
ATR0012G063 Amborella trichopoda HOM05D001101 ORTHO05D000893 5.2e-08 61.6 133 36.1


User provided reference genes

Program Settings