Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.L01879 Eucalyptus grandis HOM05D001641 ORTHO05D001667 9.0e-111 403.7 214 100.0
TWI75G0667 Tripterygium wilfordii HOM05D001641 ORTHO05D001667 1.6e-27 127.1 189 47.6
TWI79G0350 Tripterygium wilfordii HOM05D001641 ORTHO05D001667 7.5e-25 118.2 188 46.3
CsaV3_6G016420 Cucumis sativus L. HOM05D001641 ORTHO05D001667 7.1e-23 111.7 195 42.1
PGR091G0006 Punica granatum HOM05D001641 ORTHO05D001667 9.2e-23 111.3 200 43.0
PGR119G0454 Punica granatum HOM05D001641 ORTHO05D001667 9.2e-23 111.3 200 43.0
Sabra09G0029700 Salix brachista HOM05D001641 ORTHO05D001667 1.0e-21 107.8 194 43.3
ClCG02G019720 Citrullus lanatus HOM05D001641 ORTHO05D001667 5.1e-21 105.5 194 40.7
Lalb_Chr17g0344941 Lupinus albus HOM05D001641 ORTHO05D001667 6.6e-21 105.1 176 45.5
Cfa011641 Carpinus fangiana HOM05D001641 ORTHO05D001667 8.6e-21 104.8 191 50.8
Gohir.D05G091700 Gossypium hirsutum HOM05D001641 ORTHO05D001667 8.6e-21 104.8 196 39.3
Gorai.009G094200 Gossypium raimondii HOM05D001641 ORTHO05D001667 8.6e-21 104.8 196 39.3
COL.COLO4_19097 Corchorus olitorius HOM05D001641 ORTHO05D001667 3.3e-20 102.8 183 39.3
Haze_24247 Corylus avellana HOM05D001641 ORTHO05D001667 5.6e-20 102.1 190 46.3
MELO3C025873.2 Cucumis melo HOM05D001641 ORTHO05D001667 5.6e-20 102.1 196 39.3
MD03G1077100 Malus domestica HOM05D001641 ORTHO05D001667 5.6e-20 102.1 181 42.0
Gohir.A05G090700 Gossypium hirsutum HOM05D001641 ORTHO05D001667 7.3e-20 101.7 196 38.8
MD11G1081400 Malus domestica HOM05D001641 ORTHO05D001667 7.3e-20 101.7 190 39.5
Lalb_Chr10g0103211 Lupinus albus HOM05D001641 ORTHO05D001667 9.5e-20 101.3 177 42.4
Potri.009G042200 Populus trichocarpa HOM05D001641 ORTHO05D001667 1.6e-19 100.5 192 41.7
Potri.001G248400 Populus trichocarpa HOM05D001641 ORTHO05D001667 2.1e-19 100.1 202 40.6
Prupe.6G061700 Prunus persica HOM05D001641 ORTHO05D001667 2.8e-19 99.8 191 41.4
Manes.01G165100 Manihot esculenta HOM05D001641 ORTHO05D001667 6.2e-19 98.6 186 41.9
Thecc.09G306700 Theobroma cacao HOM05D001641 ORTHO05D001667 1.4e-18 97.4 185 38.4
arahy.Tifrunner.gnm1.ann1.3HB66H Arachis hypogaea HOM05D001641 ORTHO05D001667 1.8e-18 97.1 190 41.1
QL01p027079 Quercus lobata HOM05D001641 ORTHO05D001667 1.8e-18 97.1 175 49.7
Cpa.g.sc112.61 Carica papaya HOM05D001641 ORTHO05D001667 4.0e-18 95.9 196 36.7
Glyma.18G064700 Glycine max HOM05D001641 ORTHO05D001667 4.0e-18 95.9 174 42.5
CiPaw.14G062200 Carya illinoinensis HOM05D001641 ORTHO05D001667 6.8e-18 95.1 191 40.8
arahy.Tifrunner.gnm1.ann1.9LSN9I Arachis hypogaea HOM05D001641 ORTHO05D001667 1.2e-17 94.4 190 40.0
Actinidia38837 Actinidia chinensis HOM05D001641 ORTHO05D001667 1.5e-17 94.0 188 38.3
Actinidia25142 Actinidia chinensis HOM05D001641 ORTHO05D001667 2.6e-17 93.2 194 38.7
Gohir.A07G102800 Gossypium hirsutum HOM05D001641 ORTHO05D001667 2.6e-17 93.2 198 39.4
Gorai.001G114900 Gossypium raimondii HOM05D001641 ORTHO05D001667 2.6e-17 93.2 186 38.7
Gohir.D07G106800 Gossypium hirsutum HOM05D001641 ORTHO05D001667 3.4e-17 92.8 198 39.4
Duzib150G1520 Durio zibethinus HOM05D001641 ORTHO05D001667 4.4e-17 92.4 193 37.8
arahy.Tifrunner.gnm1.ann1.3I1DX3 Arachis hypogaea HOM05D001641 ORTHO05D001667 7.6e-17 91.7 193 39.4
CiPaw.13G082000 Carya illinoinensis HOM05D001641 ORTHO05D001667 7.6e-17 91.7 179 45.8
arahy.Tifrunner.gnm1.ann1.5RWH3A Arachis hypogaea HOM05D001641 ORTHO05D001667 1.3e-16 90.9 193 38.9
Glyma.11G176900 Glycine max HOM05D001641 ORTHO05D001667 1.3e-16 90.9 210 37.1
RcHm_v2.0_Chr5g0068451 Rosa chinensis HOM05D001641 ORTHO05D001667 1.7e-16 90.5 199 39.7
Sabra16G0150700 Salix brachista HOM05D001641 ORTHO05D001667 1.7e-16 90.5 198 40.9
FAN21G3833 Fragaria x ananassa HOM05D001641 ORTHO05D001667 2.9e-16 89.7 211 37.9
Rhsim13G0073200 Rhododendron simsii HOM05D001641 ORTHO05D001667 3.8e-16 89.4 184 37.5
FvH4_3g38100 Fragaria vesca HOM05D001641 ORTHO05D001667 4.9e-16 89.0 217 36.9
Sed0016143 Sechium edule HOM05D001641 ORTHO05D001667 6.4e-16 88.6 192 37.5
Ca_14902_v3 Cicer arietinum L. HOM05D001641 ORTHO05D001667 8.4e-16 88.2 177 40.1
LjContig00155g0001555 Lotus japonicus HOM05D001641 ORTHO05D001667 8.4e-16 88.2 180 39.4
Dinv28606 Davidia involucrata HOM05D001641 ORTHO05D001667 1.1e-15 87.8 232 34.5
Oeu045515.1 Olea europaea HOM05D001641 ORTHO05D001667 1.1e-15 87.8 192 39.6
CANSAT21G2528 Cannabis sativa HOM05D001641 ORTHO05D001667 1.9e-15 87.0 212 37.7
FAN11G1279 Fragaria x ananassa HOM05D001641 ORTHO05D001667 1.9e-15 87.0 211 37.0
GSVIVG01024799001 Vitis vinifera HOM05D001641 ORTHO05D001667 1.9e-15 87.0 200 35.5
EL10Ac7g16119 Beta vulgaris HOM05D001641 ORTHO05D001667 2.4e-15 86.7 171 39.8
TAR633G1677 Trochodendron aralioides HOM05D001641 ORTHO05D001667 3.2e-15 86.3 233 34.3
FAN25G2947 Fragaria x ananassa HOM05D001641 ORTHO05D001667 9.2e-15 84.7 215 36.3
Hma1.2p1_0227F.1_g096230 Hydrangea macrophylla HOM05D001641 ORTHO05D001667 9.2e-15 84.7 201 36.8
Peaxi162Scf01058g00113 Petunia axillaris HOM05D001641 ORTHO05D001667 9.2e-15 84.7 184 37.0
Lj6g0007371 Lotus japonicus HOM05D001641 ORTHO05D001667 2.1e-14 83.6 174 40.2
Lalb_Chr18g0050681 Lupinus albus HOM05D001641 ORTHO05D001667 3.5e-14 82.8 193 39.4
TAR369G0244 Trochodendron aralioides HOM05D001641 ORTHO05D001667 3.5e-14 82.8 222 33.8
Ciclev10028144m.g Citrus clementina HOM05D001641 ORTHO05D001667 4.6e-14 82.4 179 38.5
Thhalv10010268m.g Eutrema salsugineum HOM05D001641 ORTHO05D001667 6.0e-14 82.0 196 34.7
FAN16G0951 Fragaria x ananassa HOM05D001641 ORTHO05D001667 6.0e-14 82.0 215 35.8
Lsat_1_v5_gn_5_170940 Lactuca sativa HOM05D001641 ORTHO05D001667 6.0e-14 82.0 203 42.4
Medtr3g462680 Medicago truncatula HOM05D001641 ORTHO05D001667 6.0e-14 82.0 174 39.1
Duzib170G0137 Durio zibethinus HOM05D001641 ORTHO05D001667 1.0e-13 81.3 183 35.0
Glyma.02G224400 Glycine max HOM05D001641 ORTHO05D001667 1.3e-13 80.9 185 36.2
Ah.08g220490 Amaranthus hybridus HOM05D001641 ORTHO05D001667 1.7e-13 80.5 197 34.0
Phvul.008G263500 Phaseolus vulgaris HOM05D001641 ORTHO05D001667 1.7e-13 80.5 166 40.4
SGA_v2.0_scaffold120G32927 Striga asiatica HOM05D001641 ORTHO05D001667 1.7e-13 80.5 204 34.8
AUR62020090 Chenopodium quinoa HOM05D001641 ORTHO05D001667 2.3e-13 80.1 188 35.6
MSTRG.12670 Avicennia marina HOM05D001641 ORTHO05D001667 3.0e-13 79.7 187 38.5
Nitab4.5_0000744g0170 Nicotiana tabacum HOM05D001641 ORTHO05D001667 3.9e-13 79.3 201 35.8
SGA_v2.0_scaffold146G36135 Striga asiatica HOM05D001641 ORTHO05D001667 3.9e-13 79.3 198 35.4
VMungo0647G0299 Vigna mungo HOM05D001641 ORTHO05D001667 3.9e-13 79.3 166 39.2
SalBow2G0570 Salvia bowleyana HOM05D001641 ORTHO05D001667 5.1e-13 79.0 183 36.6
Sc21g0006190 Simmondsia chinensis HOM05D001641 ORTHO05D001667 5.1e-13 79.0 184 33.2
CAN.G394.102 Capsicum annuum HOM05D001641 ORTHO05D001667 6.6e-13 78.6 202 37.1
PGSC0003DMG400030346 Solanum tuberosum HOM05D001641 ORTHO05D001667 6.6e-13 78.6 211 35.1
Glyma.14G191100 Glycine max HOM05D001641 ORTHO05D001667 8.6e-13 78.2 164 41.5
Nitab4.5_0010287g0030 Nicotiana tabacum HOM05D001641 ORTHO05D001667 8.6e-13 78.2 201 35.3
Solyc06g076700.1 Solanum lycopersicum HOM05D001641 ORTHO05D001667 8.6e-13 78.2 211 34.6
Phvul.006G066100 Phaseolus vulgaris HOM05D001641 ORTHO05D001667 1.1e-12 77.8 174 39.1
CARHR155640 Cardamine hirsuta HOM05D001641 ORTHO05D001667 1.5e-12 77.4 191 37.2
Migut.N00817 Erythranthe guttata HOM05D001641 ORTHO05D001667 1.5e-12 77.4 184 33.7
PGR102G1160 Punica granatum HOM05D001641 ORTHO05D001667 1.9e-12 77.0 179 37.4
Oeu035005.1 Olea europaea HOM05D001641 ORTHO05D001667 3.3e-12 76.3 187 35.8
Sp6g20630 Schrenkiella parvula HOM05D001641 ORTHO05D001667 3.3e-12 76.3 185 36.2
Cc01_g13800 Coffea canephora HOM05D001641 ORTHO05D001667 5.6e-12 75.5 211 32.7
Sopen06g033090 Solanum pennellii HOM05D001641 ORTHO05D001667 5.6e-12 75.5 211 34.1
unitig_0.g1260 Utricularia gibba HOM05D001641 ORTHO05D001667 5.6e-12 75.5 181 35.9
Aa31LG1G11630 Aethionema arabicum HOM05D001641 ORTHO05D001667 9.6e-12 74.7 196 35.7
DCAR_018944 Daucus carota HOM05D001641 ORTHO05D001667 9.6e-12 74.7 182 35.2
Nn2g11369 Nelumbo nucifera HOM05D001641 ORTHO05D001667 9.6e-12 74.7 245 32.2
Aa31LG4G15940 Aethionema arabicum HOM05D001641 ORTHO05D001667 1.2e-11 74.3 171 36.3
Ah.15g100410 Amaranthus hybridus HOM05D001641 ORTHO05D001667 1.6e-11 73.9 202 32.7
BcaB01g00960 Brassica carinata HOM05D001641 ORTHO05D001667 1.6e-11 73.9 189 33.9
CSS0045213 Camellia sinensis var. sinensis HOM05D001641 ORTHO05D001667 1.6e-11 73.9 210 32.9
Atru.chr3.4067 Acer truncatum HOM05D001641 ORTHO05D001667 2.1e-11 73.6 190 35.8
A06p20570 Brassica napus HOM05D001641 ORTHO05D001667 2.1e-11 73.6 174 36.2
Thhalv10015909m.g Eutrema salsugineum HOM05D001641 ORTHO05D001667 2.1e-11 73.6 190 35.8
AL5G26210 Arabidopsis lyrata HOM05D001641 ORTHO05D001667 2.8e-11 73.2 195 34.4
Carub.0008s1957 Capsella rubella HOM05D001641 ORTHO05D001667 2.8e-11 73.2 191 36.1
BraA06t25133Z Brassica rapa HOM05D001641 ORTHO05D001667 6.2e-11 72.0 174 36.8
unitig_22.g5215 Utricularia gibba HOM05D001641 ORTHO05D001667 6.2e-11 72.0 95 48.4
Sp5g14730 Schrenkiella parvula HOM05D001641 ORTHO05D001667 1.4e-10 70.9 195 36.4
Aqoxy2G00992 Aquilegia oxysepala HOM05D001641 ORTHO05D001667 1.8e-10 70.5 244 34.4
BcaC04g19864 Brassica carinata HOM05D001641 ORTHO05D001667 1.8e-10 70.5 183 34.4
HanXRQChr17g0536791 Helianthus annuus HOM05D001641 ORTHO05D001667 2.4e-10 70.1 213 31.0
Psat0s2622g0040 Pisum sativum HOM05D001641 ORTHO05D001667 4.0e-10 69.3 176 34.1
BolC3t19403H Brassica oleracea HOM05D001641 ORTHO05D001667 5.2e-10 68.9 177 32.8
CARHR272870 Cardamine hirsuta HOM05D001641 ORTHO05D001667 5.2e-10 68.9 185 33.5
VMungo0540G1478 Vigna mungo HOM05D001641 ORTHO05D001667 5.2e-10 68.9 167 38.9
BcaC01g01865 Brassica carinata HOM05D001641 ORTHO05D001667 6.9e-10 68.6 182 33.5
BolC9t57970H Brassica oleracea HOM05D001641 ORTHO05D001667 6.9e-10 68.6 183 36.1
Lsat_1_v5_gn_9_36081 Lactuca sativa HOM05D001641 ORTHO05D001667 6.9e-10 68.6 276 30.8
C09p51100 Brassica napus HOM05D001641 ORTHO05D001667 8.9e-10 68.2 183 35.0
Carub.0005s1321 Capsella rubella HOM05D001641 ORTHO05D001667 8.9e-10 68.2 205 33.2
VMungo0331G1007 Vigna mungo HOM05D001641 ORTHO05D001667 8.9e-10 68.2 215 32.6
AL139U10020 Arabidopsis lyrata HOM05D001641 ORTHO05D001667 1.5e-09 67.4 184 33.7
AL8G35300 Arabidopsis lyrata HOM05D001641 ORTHO05D001667 1.5e-09 67.4 184 33.7
Hma1.2p1_0244F.1_g101220 Hydrangea macrophylla HOM05D001641 ORTHO05D001667 3.4e-09 66.2 241 34.9
THA.LOC104810732 Tarenaya hassleriana HOM05D001641 ORTHO05D001667 3.4e-09 66.2 195 33.8
HanXRQChr01g0011041 Helianthus annuus HOM05D001641 ORTHO05D001667 5.8e-09 65.5 224 29.9
HPP92_018038 Vanilla planifolia HOM05D001641 ORTHO05D001667 5.8e-09 65.5 210 31.0
MBI05_g03457_MAGBIO Magnolia biondii HOM05D001641 ORTHO05D001667 7.6e-09 65.1 130 38.5
AT3G46990 Arabidopsis thaliana HOM05D001641 ORTHO05D001667 9.9e-09 64.7 190 38.4
C03p71190 Brassica napus HOM05D001641 ORTHO05D001667 9.9e-09 64.7 181 32.6
Nn2g13606 Nelumbo nucifera HOM05D001641 ORTHO05D001667 9.9e-09 64.7 138 38.4
HanXRQChr06g0179531 Helianthus annuus HOM05D001641 ORTHO05D001667 1.3e-08 64.3 192 33.9
Zm00001eb288720 Zea mays HOM05D001641 ORTHO05D001667 1.7e-08 63.9 226 35.0
MD12G1160400 Malus domestica HOM05D001641 ORTHO05D001667 2.2e-08 63.5 255 28.6
Actinidia13778 Actinidia chinensis HOM05D001641 ORTHO05D001667 2.9e-08 63.2 234 29.5
Phvul.010G008500 Phaseolus vulgaris HOM05D001641 ORTHO05D001667 2.9e-08 63.2 112 42.0
TAR623G0053 Trochodendron aralioides HOM05D001641 ORTHO05D001667 2.9e-08 63.2 238 29.8
FAN05G0357 Fragaria x ananassa HOM05D001641 ORTHO05D001667 3.8e-08 62.8 251 32.3
Ca_09169_v3 Cicer arietinum L. HOM05D001641 ORTHO05D001667 4.9e-08 62.4 141 34.0
FvH4_6g12000 Fragaria vesca HOM05D001641 ORTHO05D001667 4.9e-08 62.4 139 36.0
FAN14G1423 Fragaria x ananassa HOM05D001641 ORTHO05D001667 4.9e-08 62.4 139 36.0
FAN14G4770 Fragaria x ananassa HOM05D001641 ORTHO05D001667 4.9e-08 62.4 139 36.0
PSO339G0414 Papaver somniferum HOM05D001641 ORTHO05D001667 4.9e-08 62.4 128 36.7
A10p15350 Brassica napus HOM05D001641 ORTHO05D001667 8.4e-08 61.6 80 45.0
Glyma.01G111900 Glycine max HOM05D001641 ORTHO05D001667 8.4e-08 61.6 116 37.9
Sc01g0006830 Simmondsia chinensis HOM05D001641 ORTHO05D001667 8.4e-08 61.6 220 31.4
THA.LOC104814902 Tarenaya hassleriana HOM05D001641 ORTHO05D001667 8.4e-08 61.6 103 41.7
HanXRQChr15g0464001 Helianthus annuus HOM05D001641 ORTHO05D001667 1.9e-07 60.5 254 30.7
AT5G58930 Arabidopsis thaliana HOM05D001641 ORTHO05D001667 2.4e-07 60.1 87 46.0
CDE03G0073 Ceratophyllum demersum HOM05D001641 ORTHO05D001667 2.4e-07 60.1 131 34.4
CDE04G3094 Ceratophyllum demersum HOM05D001641 ORTHO05D001667 2.4e-07 60.1 108 38.9
Zm00001eb367430 Zea mays HOM05D001641 ORTHO05D001667 2.4e-07 60.1 125 37.6
SGA_v2.0_scaffold106G30523 Striga asiatica HOM05D001641 ORTHO05D001667 3.2e-07 59.7 148 34.5
BraA10t43698Z Brassica rapa HOM05D001641 ORTHO05D001667 4.2e-07 59.3 171 33.3
Dinv37084 Davidia involucrata HOM05D001641 ORTHO05D001667 4.2e-07 59.3 137 35.0
SGA_v2.0_scaffold85G26763 Striga asiatica HOM05D001641 ORTHO05D001667 4.2e-07 59.3 135 34.1
AUR62041358 Chenopodium quinoa HOM05D001641 ORTHO05D001667 5.4e-07 58.9 224 29.5
FAN09G4135 Fragaria x ananassa HOM05D001641 ORTHO05D001667 5.4e-07 58.9 139 35.3
SGA_v2.0_scaffold240G44106 Striga asiatica HOM05D001641 ORTHO05D001667 7.1e-07 58.5 139 35.3
TWI53G0423 Tripterygium wilfordii HOM05D001641 ORTHO05D001667 7.1e-07 58.5 139 33.8
Zm00001eb348150 Zea mays HOM05D001641 ORTHO05D001667 7.1e-07 58.5 223 35.4
AUR62025773 Chenopodium quinoa HOM05D001641 ORTHO05D001667 9.3e-07 58.2 207 30.4
Gorai.007G378100 Gossypium raimondii HOM05D001641 ORTHO05D001667 9.3e-07 58.2 246 28.0
PSO384G4022 Papaver somniferum HOM05D001641 ORTHO05D001667 9.3e-07 58.2 151 35.8
Ciclev10011239m.g Citrus clementina HOM05D001641 ORTHO05D001667 1.2e-06 57.8 124 36.3
ECA248G0582 Erigeron canadensis HOM05D001641 ORTHO05D001667 1.2e-06 57.8 202 28.2
Lsat_1_v5_gn_8_99861 Lactuca sativa HOM05D001641 ORTHO05D001667 1.2e-06 57.8 182 34.6
Dinv35512 Davidia involucrata HOM05D001641 ORTHO05D001667 1.6e-06 57.4 235 33.6
ECA247G1117 Erigeron canadensis HOM05D001641 ORTHO05D001667 1.6e-06 57.4 224 34.8
Gohir.D04G128700 Gossypium hirsutum HOM05D001641 ORTHO05D001667 1.6e-06 57.4 234 27.4
Gorai.012G111800 Gossypium raimondii HOM05D001641 ORTHO05D001667 1.6e-06 57.4 234 27.4
Hma1.2p1_0763F.1_g214660 Hydrangea macrophylla HOM05D001641 ORTHO05D001667 1.6e-06 57.4 142 31.0
Os01g0852400 Oryza sativa ssp. japonica HOM05D001641 ORTHO05D001667 1.6e-06 57.4 128 35.2
Lj1g0001530 Lotus japonicus HOM05D001641 ORTHO05D001667 2.7e-06 56.6 140 34.3
BraA03t10508Z Brassica rapa HOM05D001641 ORTHO05D001667 3.5e-06 56.2 96 35.4
FAN02G3953 Fragaria x ananassa HOM05D001641 ORTHO05D001667 3.5e-06 56.2 139 34.5
Gohir.A04G088300 Gossypium hirsutum HOM05D001641 ORTHO05D001667 3.5e-06 56.2 233 27.0
Gohir.A11G328700 Gossypium hirsutum HOM05D001641 ORTHO05D001667 3.5e-06 56.2 240 27.9
CDE02G3996 Ceratophyllum demersum HOM05D001641 ORTHO05D001667 4.6e-06 55.8 213 27.2
AUR62001692 Chenopodium quinoa HOM05D001641 ORTHO05D001667 4.6e-06 55.8 115 36.5
Lalb_Chr20g0115031 Lupinus albus HOM05D001641 ORTHO05D001667 4.6e-06 55.8 183 33.3
ClCG10G021840 Citrullus lanatus HOM05D001641 ORTHO05D001667 6.0e-06 55.5 221 30.8
CsaV3_4G026000 Cucumis sativus L. HOM05D001641 ORTHO05D001667 6.0e-06 55.5 158 34.2
Duzib128G0887 Durio zibethinus HOM05D001641 ORTHO05D001667 6.0e-06 55.5 136 34.6
PSO339G5641 Papaver somniferum HOM05D001641 ORTHO05D001667 6.0e-06 55.5 204 29.9


User provided reference genes

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