Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.L01821 Eucalyptus grandis HOM05D000678 ORTHO05D007637 5.7e-161 570.9 287 100.0
Eucgr.D00762 Eucalyptus grandis HOM05D000678 ORTHO05D007637 4.7e-147 524.6 270 97.4
PGR004G1075 Punica granatum HOM05D000678 ORTHO05D007637 4.2e-79 298.9 291 59.1
Thecc.06G202100 Theobroma cacao HOM05D000678 ORTHO05D007637 6.9e-74 281.6 285 59.3
Dinv40465 Davidia involucrata HOM05D000678 ORTHO05D007637 4.2e-71 272.3 295 56.3
Gohir.A06G114900 Gossypium hirsutum HOM05D000678 ORTHO05D007637 6.0e-70 268.5 286 56.3
Gohir.A06G132102 Gossypium hirsutum HOM05D000678 ORTHO05D007637 6.0e-70 268.5 286 56.3
Gohir.D06G127300 Gossypium hirsutum HOM05D000678 ORTHO05D007637 1.3e-69 267.3 286 57.0
COL.COLO4_31629 Corchorus olitorius HOM05D000678 ORTHO05D007637 3.9e-69 265.8 287 57.5
Duzib235G1172 Durio zibethinus HOM05D000678 ORTHO05D007637 3.9e-69 265.8 290 56.9
Gorai.010G148800 Gossypium raimondii HOM05D000678 ORTHO05D007637 5.1e-69 265.4 286 55.9
Ciclev10015301m.g Citrus clementina HOM05D000678 ORTHO05D007637 6.7e-69 265.0 298 56.0
Potri.004G032200 Populus trichocarpa HOM05D000678 ORTHO05D007637 1.1e-66 257.7 291 53.3
Nn1g03837 Nelumbo nucifera HOM05D000678 ORTHO05D007637 3.1e-66 256.1 299 51.5
TWI63G1609 Tripterygium wilfordii HOM05D000678 ORTHO05D007637 6.9e-66 255.0 286 51.4
Cpa.g.sc27.140 Carica papaya HOM05D000678 ORTHO05D007637 2.9e-64 249.6 286 53.1
QL05p080866 Quercus lobata HOM05D000678 ORTHO05D007637 6.5e-64 248.4 288 51.7
Sabra11G0027900 Salix brachista HOM05D000678 ORTHO05D007637 5.5e-63 245.4 293 52.2
TWI38G0501 Tripterygium wilfordii HOM05D000678 ORTHO05D007637 5.5e-63 245.4 287 52.6
Gohir.A05G166500 Gossypium hirsutum HOM05D000678 ORTHO05D007637 7.2e-63 245.0 285 51.6
Potri.011G041100 Populus trichocarpa HOM05D000678 ORTHO05D007637 1.2e-62 244.2 293 51.2
Phvul.002G220700 Phaseolus vulgaris HOM05D000678 ORTHO05D007637 2.7e-62 243.0 290 52.4
VMungo0251G1732 Vigna mungo HOM05D000678 ORTHO05D007637 1.0e-61 241.1 290 51.4
Manes.17G034100 Manihot esculenta HOM05D000678 ORTHO05D007637 1.4e-61 240.7 281 52.0
Sabra04G0018400 Salix brachista HOM05D000678 ORTHO05D007637 1.4e-61 240.7 291 51.9
Hma1.2p1_1515F.1_g288190 Hydrangea macrophylla HOM05D000678 ORTHO05D007637 5.7e-60 235.3 294 50.3
CSS0013225 Camellia sinensis var. sinensis HOM05D000678 ORTHO05D007637 7.4e-60 235.0 290 52.8
MD10G1305100 Malus domestica HOM05D000678 ORTHO05D007637 9.7e-60 234.6 301 50.8
CSS0047061 Camellia sinensis var. sinensis HOM05D000678 ORTHO05D007637 3.7e-59 232.6 291 52.2
Gorai.009G174700 Gossypium raimondii HOM05D000678 ORTHO05D007637 1.4e-58 230.7 285 50.2
Manes.16G019200 Manihot esculenta HOM05D000678 ORTHO05D007637 6.9e-58 228.4 287 50.2
Gorai.010G253900 Gossypium raimondii HOM05D000678 ORTHO05D007637 2.0e-57 226.9 285 53.7
TAR626G0669 Trochodendron aralioides HOM05D000678 ORTHO05D007637 1.0e-56 224.6 296 48.0
Prupe.4G034500 Prunus persica HOM05D000678 ORTHO05D007637 2.2e-56 223.4 293 50.9
Gohir.A06G208900 Gossypium hirsutum HOM05D000678 ORTHO05D007637 5.0e-56 222.2 285 53.0
Gohir.D06G212100 Gossypium hirsutum HOM05D000678 ORTHO05D007637 1.4e-55 220.7 285 52.6
MD05G1327000 Malus domestica HOM05D000678 ORTHO05D007637 2.5e-55 219.9 306 48.4
Rhsim02G0118800 Rhododendron simsii HOM05D000678 ORTHO05D007637 5.5e-55 218.8 288 49.7
Cc00_g11830 Coffea canephora HOM05D000678 ORTHO05D007637 9.4e-55 218.0 296 48.3
Lj4g0017763 Lotus japonicus HOM05D000678 ORTHO05D007637 6.1e-54 215.3 294 49.0
Atru.chr10.2032 Acer truncatum HOM05D000678 ORTHO05D007637 3.0e-53 213.0 221 57.9
Ca_18472_v3 Cicer arietinum L. HOM05D000678 ORTHO05D007637 3.0e-53 213.0 300 47.3
Glyma.07G189000 Glycine max HOM05D000678 ORTHO05D007637 3.9e-53 212.6 296 49.0
Glyma.08G060300 Glycine max HOM05D000678 ORTHO05D007637 6.7e-53 211.8 300 48.0
Psat7g107280 Pisum sativum HOM05D000678 ORTHO05D007637 6.7e-53 211.8 304 47.0
Rhsim13G0168900 Rhododendron simsii HOM05D000678 ORTHO05D007637 8.8e-53 211.5 300 47.0
Sopen02g024160 Solanum pennellii HOM05D000678 ORTHO05D007637 2.6e-52 209.9 283 50.2
Haze_06599 Corylus avellana HOM05D000678 ORTHO05D007637 1.3e-51 207.6 205 57.6
MSTRG.13172 Avicennia marina HOM05D000678 ORTHO05D007637 1.7e-51 207.2 285 49.1
Actinidia26985 Actinidia chinensis HOM05D000678 ORTHO05D007637 2.2e-51 206.8 289 47.8
Lj1P1215T18 Lonicera japonica HOM05D000678 ORTHO05D007637 2.2e-51 206.8 300 48.7
Solyc02g079360.3 Solanum lycopersicum HOM05D000678 ORTHO05D007637 4.8e-51 205.7 289 49.5
Nitab4.5_0000649g0170 Nicotiana tabacum HOM05D000678 ORTHO05D007637 6.3e-51 205.3 291 49.5
CsaV3_6G049580 Cucumis sativus L. HOM05D000678 ORTHO05D007637 8.2e-51 204.9 293 45.7
PSO541G6463 Papaver somniferum HOM05D000678 ORTHO05D007637 1.4e-50 204.1 293 48.5
PSO675G0331 Papaver somniferum HOM05D000678 ORTHO05D007637 3.1e-50 203.0 294 48.3
TAR627G1079 Trochodendron aralioides HOM05D000678 ORTHO05D007637 3.1e-50 203.0 263 49.4
FAN21G1949 Fragaria x ananassa HOM05D000678 ORTHO05D007637 4.1e-50 202.6 303 46.9
Sc05g0008200 Simmondsia chinensis HOM05D000678 ORTHO05D007637 2.6e-49 199.9 296 48.6
Actinidia05564 Actinidia chinensis HOM05D000678 ORTHO05D007637 3.5e-49 199.5 294 46.6
Aa31LG9G9300 Aethionema arabicum HOM05D000678 ORTHO05D007637 3.5e-49 199.5 321 45.5
Lalb_Chr16g0383361 Lupinus albus HOM05D000678 ORTHO05D007637 4.5e-49 199.1 301 46.5
ClCG01G022400 Citrullus lanatus HOM05D000678 ORTHO05D007637 1.3e-48 197.6 296 44.6
FAN25G0180 Fragaria x ananassa HOM05D000678 ORTHO05D007637 2.9e-48 196.4 306 45.1
Gohir.D05G169500 Gossypium hirsutum HOM05D000678 ORTHO05D007637 2.9e-48 196.4 246 48.4
SalBow7G2539 Salvia bowleyana HOM05D000678 ORTHO05D007637 3.8e-48 196.1 291 46.4
SalBow7G3340 Salvia bowleyana HOM05D000678 ORTHO05D007637 3.8e-48 196.1 291 46.4
FAN16G2688 Fragaria x ananassa HOM05D000678 ORTHO05D007637 6.5e-48 195.3 303 45.9
Oeu016135.1 Olea europaea HOM05D000678 ORTHO05D007637 8.5e-48 194.9 282 47.5
FvH4_3g03730 Fragaria vesca HOM05D000678 ORTHO05D007637 3.2e-47 193.0 303 45.5
Peaxi162Scf00272g00002 Petunia axillaris HOM05D000678 ORTHO05D007637 7.2e-47 191.8 288 45.8
Thhalv10028630m.g Eutrema salsugineum HOM05D000678 ORTHO05D007637 1.6e-46 190.7 312 45.2
arahy.Tifrunner.gnm1.ann1.15NCRR Arachis hypogaea HOM05D000678 ORTHO05D007637 6.1e-46 188.7 289 45.3
FAN11G0235 Fragaria x ananassa HOM05D000678 ORTHO05D007637 6.1e-46 188.7 303 44.9
DCAR_008089 Daucus carota HOM05D000678 ORTHO05D007637 1.0e-45 188.0 299 45.5
Aqoxy2G02446 Aquilegia oxysepala HOM05D000678 ORTHO05D007637 1.4e-45 187.6 297 46.1
Medtr4g091530 Medicago truncatula HOM05D000678 ORTHO05D007637 1.4e-45 187.6 307 46.6
DCAR_004157 Daucus carota HOM05D000678 ORTHO05D007637 2.3e-45 186.8 291 46.0
CiPaw.09G157000 Carya illinoinensis HOM05D000678 ORTHO05D007637 1.1e-44 184.5 299 44.1
arahy.Tifrunner.gnm1.ann1.VDG15V Arachis hypogaea HOM05D000678 ORTHO05D007637 2.0e-44 183.7 289 44.6
CANSAT56G1015 Cannabis sativa HOM05D000678 ORTHO05D007637 2.0e-44 183.7 300 44.0
Carub.0006s3310 Capsella rubella HOM05D000678 ORTHO05D007637 7.4e-44 181.8 318 44.3
PGSC0003DMG400022398 Solanum tuberosum HOM05D000678 ORTHO05D007637 7.4e-44 181.8 292 45.9
C02p40030 Brassica napus HOM05D000678 ORTHO05D007637 1.3e-43 181.0 327 43.1
ECA236G0682 Erigeron canadensis HOM05D000678 ORTHO05D007637 1.7e-43 180.6 274 48.5
MBI02_g36453_MAGBIO Magnolia biondii HOM05D000678 ORTHO05D007637 1.1e-42 177.9 316 47.2
BraA02t07505Z Brassica rapa HOM05D000678 ORTHO05D007637 1.4e-42 177.6 323 43.3
CARHR252400 Cardamine hirsuta HOM05D000678 ORTHO05D007637 1.4e-42 177.6 316 43.4
CAN.G424.34 Capsicum annuum HOM05D000678 ORTHO05D007637 2.0e-41 173.7 295 42.7
A09p25600 Brassica napus HOM05D000678 ORTHO05D007637 4.5e-41 172.6 304 43.8
AL6G48750 Arabidopsis lyrata HOM05D000678 ORTHO05D007637 1.7e-40 170.6 316 41.8
Sed0024136 Sechium edule HOM05D000678 ORTHO05D007637 1.7e-40 170.6 298 40.6
BcaB05g23698 Brassica carinata HOM05D000678 ORTHO05D007637 2.9e-40 169.9 323 41.8
Oeu050814.1 Olea europaea HOM05D000678 ORTHO05D007637 2.9e-40 169.9 291 43.0
BcaB01g01883 Brassica carinata HOM05D000678 ORTHO05D007637 5.0e-40 169.1 305 43.6
A02p25180 Brassica napus HOM05D000678 ORTHO05D007637 8.5e-40 168.3 321 42.4
BcaC03g16221 Brassica carinata HOM05D000678 ORTHO05D007637 1.1e-39 167.9 319 42.0
unitig_749.g13633 Utricularia gibba HOM05D001014 ORTHO05D007637 1.9e-39 167.2 259 45.9
AT4G05150 Arabidopsis thaliana HOM05D000678 ORTHO05D007637 5.5e-39 165.6 316 41.8
Migut.H01527 Erythranthe guttata HOM05D000678 ORTHO05D007637 7.2e-39 165.2 296 42.9
MSTRG.14668 Avicennia marina HOM05D000678 ORTHO05D007637 3.6e-38 162.9 288 41.7
HanXRQChr15g0482561 Helianthus annuus HOM05D000678 ORTHO05D007637 4.7e-38 162.5 283 43.5
Lsat_1_v5_gn_7_20421 Lactuca sativa HOM05D000678 ORTHO05D007637 3.0e-37 159.8 285 42.5
TPR.G15373 Trifolium pratense HOM05D000678 ORTHO05D007637 4.0e-37 159.5 156 59.6
Nitab4.5_0011386g0010 Nicotiana tabacum HOM05D000678 ORTHO05D007637 6.8e-37 158.7 288 40.6
BolC9t56101H Brassica oleracea HOM05D000678 ORTHO05D007637 8.8e-37 158.3 296 43.6
Ah.09g236350 Amaranthus hybridus HOM05D000678 ORTHO05D007637 3.4e-36 156.4 289 43.3
BcaC04g21376 Brassica carinata HOM05D000678 ORTHO05D007637 4.4e-36 156.0 293 42.7
C09p32540 Brassica napus HOM05D000678 ORTHO05D007637 4.4e-36 156.0 293 42.7
AUR62012511 Chenopodium quinoa HOM05D000678 ORTHO05D007637 4.4e-36 156.0 280 40.7
AUR62014688 Chenopodium quinoa HOM05D000678 ORTHO05D007637 4.8e-35 152.5 281 44.8
EL10Ac8g19980 Beta vulgaris HOM05D000678 ORTHO05D007637 1.4e-34 151.0 298 41.9
BraA09t38134Z Brassica rapa HOM05D000678 ORTHO05D007637 1.1e-31 141.4 300 40.0
Sp6g03850 Schrenkiella parvula HOM05D000678 ORTHO05D007637 1.1e-31 141.4 320 39.4
unitig_26.g9379 Utricularia gibba HOM05D000678 ORTHO05D007637 5.0e-24 115.9 265 38.9
HPP92_000911 Vanilla planifolia HOM05D000678 ORTHO05D007637 9.2e-18 95.1 279 34.8
SEGI_04766 Sequoiadendron giganteum HOM05D000678 ORTHO05D007637 1.9e-15 87.4 189 44.4
Haze_06600 Corylus avellana HOM05D000678 ORTHO05D007637 6.1e-14 82.4 97 45.4
SEGI_01378 Sequoiadendron giganteum HOM05D000678 ORTHO05D001709 2.2e-11 73.9 290 33.1
Actinidia35104 Actinidia chinensis HOM05D000678 ORTHO05D001709 7.0e-10 68.9 147 38.1
CSS0026823 Camellia sinensis var. sinensis HOM05D000678 ORTHO05D001709 9.2e-10 68.6 145 37.9
Sabra12G0037300 Salix brachista HOM05D000678 ORTHO05D001709 2.7e-09 67.0 166 33.7
Dinv16143 Davidia involucrata HOM05D000678 ORTHO05D001709 1.7e-08 64.3 177 33.9
Rhsim12G0141200 Rhododendron simsii HOM05D000678 ORTHO05D001709 1.7e-08 64.3 150 36.0
Dinv31588 Davidia involucrata HOM05D000678 ORTHO05D001709 5.0e-08 62.8 148 34.5
Os07g0556300 Oryza sativa ssp. japonica HOM05D000678 ORTHO05D007637 5.0e-08 62.8 231 32.9
Cpa.g.sc3.456 Carica papaya HOM05D000678 ORTHO05D001709 6.6e-08 62.4 143 35.0
Lsat_1_v5_gn_8_142181 Lactuca sativa HOM05D000678 ORTHO05D001709 1.5e-07 61.2 144 35.4
Lsat_1_v5_gn_4_14800 Lactuca sativa HOM05D000678 ORTHO05D001709 1.9e-07 60.8 150 36.7
MELO3C017326.2 Cucumis melo HOM05D000678 ORTHO05D001709 2.5e-07 60.5 155 34.8
Lalb_Chr21g0308711 Lupinus albus HOM05D000678 ORTHO05D001709 2.5e-07 60.5 160 33.1
Zm00001eb124810 Zea mays HOM05D000678 ORTHO05D001709 3.3e-07 60.1 175 32.6
Gohir.A07G059700 Gossypium hirsutum HOM05D000678 ORTHO05D001709 4.3e-07 59.7 141 34.8
CAN.G1129.45 Capsicum annuum HOM05D000678 ORTHO05D001709 7.3e-07 58.9 148 33.1
PGSC0003DMG400005666 Solanum tuberosum HOM05D000678 ORTHO05D001709 7.3e-07 58.9 149 32.9
Zm00001eb323860 Zea mays HOM05D000678 ORTHO05D007637 7.3e-07 58.9 231 32.5
Zm00001eb335590 Zea mays HOM05D000678 ORTHO05D001709 7.3e-07 58.9 177 31.6
Oeu000990.1 Olea europaea HOM05D000678 ORTHO05D001709 9.5e-07 58.5 140 37.9
Sed0011837 Sechium edule HOM05D000678 ORTHO05D001709 9.5e-07 58.5 146 34.2
Actinidia16691 Actinidia chinensis HOM05D000678 ORTHO05D001709 1.2e-06 58.2 241 27.8
ClCG06G014590 Citrullus lanatus HOM05D000678 ORTHO05D001709 1.2e-06 58.2 154 33.8
Migut.D01601 Erythranthe guttata HOM05D000678 ORTHO05D001709 1.2e-06 58.2 151 34.4
Eucgr.B02854 Eucalyptus grandis HOM05D000678 ORTHO05D001709 1.2e-06 58.2 132 34.1
Nn4g23966 Nelumbo nucifera HOM05D000678 ORTHO05D001709 1.6e-06 57.8 156 33.3
Sopen03g037820 Solanum pennellii HOM05D000678 ORTHO05D001709 1.6e-06 57.8 150 32.7
GSVIVG01008346001 Vitis vinifera HOM05D000678 ORTHO05D001709 1.6e-06 57.8 146 33.6
CsaV3_1G004030 Cucumis sativus L. HOM05D000678 ORTHO05D001709 2.1e-06 57.4 156 34.6
Potri.008G124700 Populus trichocarpa HOM05D000678 ORTHO05D001709 2.1e-06 57.4 163 28.8
Sed0019532 Sechium edule HOM05D000678 ORTHO05D001709 2.1e-06 57.4 145 32.4
vmacro10607 Vaccinium macrocarpon HOM05D000678 ORTHO05D001709 2.1e-06 57.4 141 34.0
Cfa015832 Carpinus fangiana HOM05D000678 ORTHO05D001709 2.8e-06 57.0 158 29.7
Haze_00659 Corylus avellana HOM05D000678 ORTHO05D001709 2.8e-06 57.0 158 29.7
Gohir.D07G064400 Gossypium hirsutum HOM05D000678 ORTHO05D001709 2.8e-06 57.0 141 33.3
Gorai.001G068000 Gossypium raimondii HOM05D000678 ORTHO05D001709 2.8e-06 57.0 141 33.3
ECA240G4724 Erigeron canadensis HOM05D000678 ORTHO05D001709 3.6e-06 56.6 197 29.9
Rhsim09G0103400 Rhododendron simsii HOM05D000678 ORTHO05D001709 3.6e-06 56.6 154 34.4
SEGI_11023 Sequoiadendron giganteum HOM05D000678 ORTHO05D002523 3.6e-06 56.6 91 42.9
EL10Ac6g14296 Beta vulgaris HOM05D000678 ORTHO05D001709 4.7e-06 56.2 167 31.1
Solyc03g118870.4 Solanum lycopersicum HOM05D000678 ORTHO05D001709 4.7e-06 56.2 150 32.0
DCAR_023628 Daucus carota HOM05D000678 ORTHO05D001709 6.2e-06 55.8 139 33.8
Nn3g17962 Nelumbo nucifera HOM05D000678 ORTHO05D001709 6.2e-06 55.8 158 34.8
PSO017G6534 Papaver somniferum HOM05D000678 ORTHO05D001709 6.2e-06 55.8 162 32.1
PSO478G2516 Papaver somniferum HOM05D000678 ORTHO05D001709 6.2e-06 55.8 162 32.1
Aqoxy5G02099 Aquilegia oxysepala HOM05D000678 ORTHO05D002523 8.0e-06 55.5 100 38.0
HanXRQChr17g0567211 Helianthus annuus HOM05D000678 ORTHO05D001709 8.0e-06 55.5 157 31.8
Hma1.2p1_0767F.1_g215510 Hydrangea macrophylla HOM05D000678 ORTHO05D001709 8.0e-06 55.5 56 50.0
Lsat_1_v5_gn_8_42480 Lactuca sativa HOM05D000678 ORTHO05D001709 8.0e-06 55.5 150 34.0
Nitab4.5_0025819g0010 Nicotiana tabacum HOM05D000678 ORTHO05D001709 8.0e-06 55.5 148 33.1
PGSC0003DMG400005971 Solanum tuberosum HOM05D000678 ORTHO05D001709 8.0e-06 55.5 252 28.6


User provided reference genes

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