Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.L01710 Eucalyptus grandis HOM05D003790 ORTHO05D004481 7.8e-97 357.1 173 100.0
Eucgr.H01065 Eucalyptus grandis HOM05D003790 ORTHO05D004481 1.0e-88 330.1 178 91.0
Eucgr.L01709 Eucalyptus grandis HOM05D003790 ORTHO05D004481 1.3e-67 260.0 176 74.4
Eucgr.H01068 Eucalyptus grandis HOM05D003790 ORTHO05D004481 2.2e-67 259.2 176 72.7
Eucgr.H01059 Eucalyptus grandis HOM05D003790 ORTHO05D004481 4.2e-66 255.0 175 73.1
Eucgr.L02503 Eucalyptus grandis HOM05D003790 ORTHO05D004481 2.6e-60 235.7 168 73.8
Eucgr.H01062 Eucalyptus grandis HOM05D003790 ORTHO05D004481 1.5e-55 219.9 152 74.3
Eucgr.L01711 Eucalyptus grandis HOM05D003790 ORTHO05D004481 2.5e-55 219.2 143 74.8
Eucgr.L02691 Eucalyptus grandis HOM05D003790 ORTHO05D004481 1.3e-43 180.3 178 60.1
Eucgr.E02370 Eucalyptus grandis HOM05D003790 ORTHO05D004481 4.2e-42 175.3 178 58.4
Duzib138G1652 Durio zibethinus HOM05D003790 ORTHO05D004481 1.2e-36 157.1 183 47.5
Potri.002G198800 Populus trichocarpa HOM05D003790 ORTHO05D004481 8.5e-35 151.0 181 45.9
Manes.01G225600 Manihot esculenta HOM05D003790 ORTHO05D004481 1.1e-34 150.6 160 53.1
VMungo0720G2360 Vigna mungo HOM05D003790 ORTHO05D004481 5.5e-34 148.3 176 48.9
Phvul.007G216200 Phaseolus vulgaris HOM05D003790 ORTHO05D004481 1.2e-33 147.1 183 47.5
Rhsim01G0289200 Rhododendron simsii HOM05D003790 ORTHO05D004481 1.2e-33 147.1 174 50.0
PGSC0003DMG400009002 Solanum tuberosum HOM05D003790 ORTHO05D004481 1.6e-33 146.7 168 46.4
PGR119G2441 Punica granatum HOM05D003790 ORTHO05D004481 2.1e-33 146.4 172 51.7
Thecc.01G310000 Theobroma cacao HOM05D003790 ORTHO05D004481 2.7e-33 146.0 180 48.3
Duzib133G0291 Durio zibethinus HOM05D003790 ORTHO05D004481 1.0e-32 144.1 179 48.0
TPR.G7317 Trifolium pratense HOM05D003790 ORTHO05D004481 3.0e-32 142.5 178 44.4
Sed0026960 Sechium edule HOM05D003790 ORTHO05D004481 5.1e-32 141.7 167 48.5
Sabra14G0091700 Salix brachista HOM05D003790 ORTHO05D004481 1.5e-31 140.2 182 47.3
THA.LOC104801296 Tarenaya hassleriana HOM05D003790 ORTHO05D004481 1.5e-31 140.2 173 47.4
CAN.G69.5 Capsicum annuum HOM05D003790 ORTHO05D004481 2.0e-31 139.8 183 44.8
Glyma.02G014300 Glycine max HOM05D003790 ORTHO05D004481 2.6e-31 139.4 178 45.5
Nitab4.5_0010548g0010 Nicotiana tabacum HOM05D003790 ORTHO05D004481 2.6e-31 139.4 184 46.2
PGR119G1194 Punica granatum HOM05D003790 ORTHO05D004481 3.3e-31 139.0 172 50.0
PGSC0003DMG400037362 Solanum tuberosum HOM05D003790 ORTHO05D004481 5.7e-31 138.3 173 45.7
Lalb_Chr02g0146651 Lupinus albus HOM05D003790 ORTHO05D004481 9.7e-31 137.5 182 46.7
Gorai.001G143000 Gossypium raimondii HOM05D003790 ORTHO05D004481 1.3e-30 137.1 187 43.9
Solyc01g079670.2 Solanum lycopersicum HOM05D003790 ORTHO05D004481 1.3e-30 137.1 157 49.7
Cfa005842 Carpinus fangiana HOM05D003790 ORTHO05D004481 1.7e-30 136.7 176 48.3
Sabra02G0159000 Salix brachista HOM05D003790 ORTHO05D004481 1.7e-30 136.7 193 40.4
Haze_05008 Corylus avellana HOM05D003790 ORTHO05D004481 2.2e-30 136.3 167 47.3
Potri.014G123400 Populus trichocarpa HOM05D003790 ORTHO05D004481 2.2e-30 136.3 181 43.6
Rhsim13G0006400 Rhododendron simsii HOM05D003790 ORTHO05D004481 2.2e-30 136.3 188 45.7
CiPaw.07G114900 Carya illinoinensis HOM05D003790 ORTHO05D004481 2.8e-30 136.0 177 47.5
TWI36G1341 Tripterygium wilfordii HOM05D003790 ORTHO05D004481 2.8e-30 136.0 182 41.8
Lalb_Chr06g0166611 Lupinus albus HOM05D003790 ORTHO05D004481 3.7e-30 135.6 176 46.6
Sopen01g031450 Solanum pennellii HOM05D003790 ORTHO05D004481 3.7e-30 135.6 157 46.5
Gohir.D07G131700 Gossypium hirsutum HOM05D003790 ORTHO05D004481 6.3e-30 134.8 187 43.3
PGR119G2399 Punica granatum HOM05D003790 ORTHO05D004481 6.3e-30 134.8 161 53.4
Lj2P1202T13 Lonicera japonica HOM05D003790 ORTHO05D004481 8.2e-30 134.4 171 46.8
Gorai.007G124700 Gossypium raimondii HOM05D003790 ORTHO05D004481 1.1e-29 134.0 179 45.3
Peaxi162Scf00001g00262 Petunia axillaris HOM05D003790 ORTHO05D004481 1.4e-29 133.7 196 41.8
ClCG09G005270 Citrullus lanatus HOM05D003790 ORTHO05D004481 1.8e-29 133.3 167 45.5
Gohir.A07G127400 Gossypium hirsutum HOM05D003790 ORTHO05D004481 1.8e-29 133.3 186 41.9
DCAR_018309 Daucus carota HOM05D003790 ORTHO05D004481 2.4e-29 132.9 173 46.8
Gohir.D11G116500 Gossypium hirsutum HOM05D003790 ORTHO05D004481 2.4e-29 132.9 180 45.0
Medtr1g087710 Medicago truncatula HOM05D003790 ORTHO05D004481 4.1e-29 132.1 179 44.7
Nitab4.5_0017359g0010 Nicotiana tabacum HOM05D003790 ORTHO05D004481 4.1e-29 132.1 189 40.7
Glyma.10G015000 Glycine max HOM05D003790 ORTHO05D004481 5.3e-29 131.7 183 44.8
Lj1C20T16 Lonicera japonica HOM05D003790 ORTHO05D004481 5.3e-29 131.7 170 48.2
C05p01360 Brassica napus HOM05D003790 ORTHO05D004481 7.0e-29 131.3 164 47.0
Nitab4.5_0000116g0070 Nicotiana tabacum HOM05D003790 ORTHO05D004481 7.0e-29 131.3 189 45.0
Oeu008329.1 Olea europaea HOM05D003790 ORTHO05D004481 7.0e-29 131.3 169 45.6
Solyc01g079660.2 Solanum lycopersicum HOM05D003790 ORTHO05D004481 1.5e-28 130.2 177 44.1
vmacro02415 Vaccinium macrocarpon HOM05D003790 ORTHO05D004481 1.5e-28 130.2 189 44.4
Sed0014571 Sechium edule HOM05D003790 ORTHO05D004481 2.0e-28 129.8 161 44.1
Actinidia25835 Actinidia chinensis HOM05D003270 ORTHO05D003662 2.6e-28 129.4 161 46.6
CiPaw.08G091700 Carya illinoinensis HOM05D003790 ORTHO05D004481 4.5e-28 128.6 175 43.4
Nn3g21628 Nelumbo nucifera HOM05D003790 ORTHO05D004481 4.5e-28 128.6 188 43.6
BolC5t28918H Brassica oleracea HOM05D003790 ORTHO05D004481 5.9e-28 128.3 164 46.3
Oeu005872.1 Olea europaea HOM05D003790 ORTHO05D004481 5.9e-28 128.3 183 41.5
TAR633G0094 Trochodendron aralioides HOM05D003790 ORTHO05D004481 5.9e-28 128.3 184 45.7
Ca_10301_v3 Cicer arietinum L. HOM05D003790 ORTHO05D004481 7.7e-28 127.9 171 45.0
Lj1C20T6 Lonicera japonica HOM05D003790 ORTHO05D004481 7.7e-28 127.9 172 48.8
BcaB03g15798 Brassica carinata HOM05D003790 ORTHO05D004481 1.0e-27 127.5 164 45.7
Eucgr.K03524 Eucalyptus grandis HOM05D003790 ORTHO05D004481 1.0e-27 127.5 187 44.9
Actinidia21012 Actinidia chinensis HOM05D003790 ORTHO05D004481 1.7e-27 126.7 161 46.0
A10p01380 Brassica napus HOM05D003790 ORTHO05D004481 1.7e-27 126.7 164 45.7
BraA10t42414Z Brassica rapa HOM05D003790 ORTHO05D004481 1.7e-27 126.7 164 45.7
Cpa.g.sc18.4 Carica papaya HOM05D003790 ORTHO05D004481 1.7e-27 126.7 185 44.3
MELO3C015941.2 Cucumis melo HOM05D003790 ORTHO05D004481 1.7e-27 126.7 173 43.9
CsaV3_7G029800 Cucumis sativus L. HOM05D003790 ORTHO05D004481 1.7e-27 126.7 185 42.7
Sopen01g031440 Solanum pennellii HOM05D003790 ORTHO05D004481 1.7e-27 126.7 176 43.8
TAR362G0521 Trochodendron aralioides HOM05D003790 ORTHO05D004481 1.7e-27 126.7 170 45.9
TAR633G1354 Trochodendron aralioides HOM05D003790 ORTHO05D004481 1.7e-27 126.7 184 46.2
Gohir.A12G126700 Gossypium hirsutum HOM05D003790 ORTHO05D004481 2.9e-27 125.9 181 44.8
Sp1g01670 Schrenkiella parvula HOM05D003790 ORTHO05D004481 5.0e-27 125.2 166 46.4
Carub.0001s0174 Capsella rubella HOM05D003790 ORTHO05D004481 6.5e-27 124.8 167 44.3
CANSAT25G2552 Cannabis sativa HOM05D003790 ORTHO05D004481 1.5e-26 123.6 174 44.3
FAN13G3073 Fragaria x ananassa HOM05D003790 ORTHO05D004481 1.9e-26 123.2 189 45.0
Ciclev10022416m.g Citrus clementina HOM05D003790 ORTHO05D004481 2.5e-26 122.9 186 41.9
Peaxi162Scf00001g00263 Petunia axillaris HOM05D003790 ORTHO05D004481 2.5e-26 122.9 185 42.2
AL1G12020 Arabidopsis lyrata HOM05D003790 ORTHO05D004481 3.2e-26 122.5 165 46.1
AT5G38700 Arabidopsis thaliana HOM05D003790 ORTHO05D004481 3.2e-26 122.5 172 45.3
Peaxi162Scf00001g00254 Petunia axillaris HOM05D003790 ORTHO05D004481 3.2e-26 122.5 187 43.9
FvH4_5g39610 Fragaria vesca HOM05D003790 ORTHO05D004481 4.2e-26 122.1 191 44.0
FAN08G1995 Fragaria x ananassa HOM05D003790 ORTHO05D004481 4.2e-26 122.1 191 44.0
FAN18G0157 Fragaria x ananassa HOM05D003790 ORTHO05D004481 4.2e-26 122.1 191 44.0
HanXRQChr05g0137351 Helianthus annuus HOM05D003790 ORTHO05D004481 4.2e-26 122.1 172 44.8
FAN04G0217 Fragaria x ananassa HOM05D003790 ORTHO05D004481 5.5e-26 121.7 189 43.4
Gohir.A11G111300 Gossypium hirsutum HOM05D003790 ORTHO05D004481 5.5e-26 121.7 181 43.6
HanXRQChr05g0137341 Helianthus annuus HOM05D003790 ORTHO05D004481 5.5e-26 121.7 170 44.1
BcaC07g42401 Brassica carinata HOM05D003790 ORTHO05D004481 7.2e-26 121.3 156 43.6
Thhalv10009571m.g Eutrema salsugineum HOM05D003790 ORTHO05D004481 7.2e-26 121.3 164 45.1
BcaC07g42307 Brassica carinata HOM05D003790 ORTHO05D004481 9.4e-26 120.9 163 45.4
HanXRQChr01g0000871 Helianthus annuus HOM05D003790 ORTHO05D004481 9.4e-26 120.9 165 43.6
Ah.11g049420 Amaranthus hybridus HOM05D003790 ORTHO05D004481 1.2e-25 120.6 166 46.4
Aqoxy2G02808 Aquilegia oxysepala HOM05D003790 ORTHO05D004481 1.2e-25 120.6 183 39.3
Gorai.008G141400 Gossypium raimondii HOM05D003790 ORTHO05D004481 1.6e-25 120.2 181 43.1
C08p53190 Brassica napus HOM05D003790 ORTHO05D004481 2.7e-25 119.4 166 45.2
BolC8t52834H Brassica oleracea HOM05D003790 ORTHO05D004481 2.7e-25 119.4 166 45.2
A09p68580 Brassica napus HOM05D003790 ORTHO05D004481 4.7e-25 118.6 165 45.5
BraA09t42201Z Brassica rapa HOM05D003790 ORTHO05D004481 4.7e-25 118.6 165 45.5
Dinv33098 Davidia involucrata HOM05D003790 ORTHO05D004481 4.7e-25 118.6 206 42.2
RcHm_v2.0_Chr7g0241911 Rosa chinensis HOM05D003790 ORTHO05D004481 6.1e-25 118.2 187 42.2
PSO210G7449 Papaver somniferum HOM05D003790 ORTHO05D004481 8.0e-25 117.9 184 41.8
Atru.chr5.1052 Acer truncatum HOM05D003790 ORTHO05D004481 1.0e-24 117.5 158 43.0
Nitab4.5_0025993g0010 Nicotiana tabacum HOM05D003790 ORTHO05D004481 1.0e-24 117.5 186 42.5
Hma1.2p1_1302F.1_g274340 Hydrangea macrophylla HOM05D003790 ORTHO05D004481 1.4e-24 117.1 177 42.9
ECA248G3170 Erigeron canadensis HOM05D003790 ORTHO05D004481 3.0e-24 115.9 168 42.9
Sp6g02070 Schrenkiella parvula HOM05D003790 ORTHO05D004481 4.0e-24 115.5 164 42.7
Cc08_g11830 Coffea canephora HOM05D003790 ORTHO05D004481 5.2e-24 115.2 217 39.2
PSO761G0583 Papaver somniferum HOM05D003790 ORTHO05D004481 8.8e-24 114.4 186 40.9
BraA03t12296Z Brassica rapa HOM05D003790 ORTHO05D004481 1.1e-23 114.0 173 42.2
CARHR001970 Cardamine hirsuta HOM05D003790 ORTHO05D004481 1.1e-23 114.0 169 43.8
A03p31160 Brassica napus HOM05D003790 ORTHO05D004481 2.6e-23 112.8 172 42.4
BcaB01g02435 Brassica carinata HOM05D003790 ORTHO05D004481 4.4e-23 112.1 170 44.1
Lsat_1_v5_gn_9_541 Lactuca sativa HOM05D003790 ORTHO05D004481 4.4e-23 112.1 169 40.2
Dinv10067 Davidia involucrata HOM05D003790 ORTHO05D004481 5.7e-23 111.7 173 42.2
Carub.0006s3500 Capsella rubella HOM05D003790 ORTHO05D004481 7.5e-23 111.3 179 42.5
SGA_v2.0_scaffold198G41126 Striga asiatica HOM05D003790 ORTHO05D004481 7.5e-23 111.3 173 47.4
EL10As5g23497 Beta vulgaris HOM05D003790 ORTHO05D004481 1.3e-22 110.5 167 43.1
BolC3t16086H Brassica oleracea HOM05D003790 ORTHO05D004481 1.3e-22 110.5 172 41.3
TWI75G0985 Tripterygium wilfordii HOM05D003790 ORTHO05D004481 2.8e-22 109.4 151 40.4
Thhalv10029373m.g Eutrema salsugineum HOM05D003790 ORTHO05D004481 3.7e-22 109.0 165 41.2
QL12p028945 Quercus lobata HOM05D003790 ORTHO05D004481 4.8e-22 108.6 172 42.4
COL.COLO4_23265 Corchorus olitorius HOM05D003790 ORTHO05D004481 6.3e-22 108.2 159 44.7
Eucgr.K03525 Eucalyptus grandis HOM05D003790 ORTHO05D004481 6.3e-22 108.2 167 44.9
BcaC01g06770 Brassica carinata HOM05D003790 ORTHO05D004481 1.1e-21 107.5 172 40.7
BcaC01g06771 Brassica carinata HOM05D003790 ORTHO05D004481 1.1e-21 107.5 172 40.7
C03p38000 Brassica napus HOM05D003790 ORTHO05D004481 1.1e-21 107.5 172 40.7
Oeu005873.1 Olea europaea HOM05D003790 ORTHO05D004481 4.1e-21 105.5 169 42.0
SalBow2G3380 Salvia bowleyana HOM05D003790 ORTHO05D004481 7.0e-21 104.8 167 41.9
Aa31LG5G1840 Aethionema arabicum HOM05D003790 ORTHO05D004481 9.1e-21 104.4 170 42.4
AL6G50980 Arabidopsis lyrata HOM05D003790 ORTHO05D004481 1.2e-20 104.0 167 40.7
AT4G02170 Arabidopsis thaliana HOM05D003790 ORTHO05D004481 1.6e-20 103.6 167 41.9
Nitab4.5_0000116g0080 Nicotiana tabacum HOM05D003790 ORTHO05D004481 2.6e-20 102.8 177 40.1
Migut.D00101 Erythranthe guttata HOM05D003790 ORTHO05D004481 7.7e-20 101.3 161 42.2
Eucgr.A02768 Eucalyptus grandis HOM05D003790 ORTHO05D004481 1.0e-19 100.9 104 54.8
Sc17g0000570 Simmondsia chinensis HOM05D003790 ORTHO05D004481 2.2e-19 99.8 171 38.6
Prupe.8G269600 Prunus persica HOM05D003790 ORTHO05D004481 2.5e-18 96.3 182 40.1
Gohir.D12G130100 Gossypium hirsutum HOM05D003790 ORTHO05D004481 9.4e-18 94.4 142 43.0
Actinidia21418 Actinidia chinensis HOM05D003790 ORTHO05D004481 1.2e-17 94.0 141 41.8
Oeu008453.1 Olea europaea HOM05D003688 ORTHO05D004481 3.6e-17 92.4 131 41.2
HPP92_025189 Vanilla planifolia HOM05D003790 ORTHO05D004481 1.8e-16 90.1 169 37.9
AUR62024684 Chenopodium quinoa HOM05D003790 ORTHO05D004481 7.5e-15 84.7 158 38.0
Thecc.01G102100 Theobroma cacao HOM05D003790 ORTHO05D004481 7.5e-15 84.7 164 37.8
MD11G1317200 Malus domestica HOM05D003790 ORTHO05D004481 1.7e-14 83.6 212 32.5
AUR62011841 Chenopodium quinoa HOM05D003790 ORTHO05D004481 2.2e-14 83.2 157 40.1
Eucgr.E02488 Eucalyptus grandis HOM05D003790 ORTHO05D004481 8.3e-14 81.3 109 46.8
CARHR250350 Cardamine hirsuta HOM05D003790 ORTHO05D004481 1.2e-12 77.4 112 42.0
Eucgr.L00541 Eucalyptus grandis HOM05D003790 ORTHO05D004481 1.2e-12 77.4 128 43.8
Eucgr.F04057 Eucalyptus grandis HOM05D003790 ORTHO05D004481 2.0e-12 76.6 106 50.0
Os03g0302800 Oryza sativa ssp. japonica HOM05D003790 ORTHO05D004481 7.7e-12 74.7 199 31.7
Duzib147G1191 Durio zibethinus HOM05D003790 ORTHO05D004481 1.0e-11 74.3 169 36.7
ATR0706G232 Amborella trichopoda HOM05D003790 ORTHO05D004481 2.2e-11 73.2 168 32.1
HPP92_006897 Vanilla planifolia HOM05D003790 ORTHO05D004481 2.9e-11 72.8 95 46.3
Duzib264G0610 Durio zibethinus HOM05D003790 ORTHO05D004481 3.8e-11 72.4 155 37.4
Eucgr.F04083 Eucalyptus grandis HOM05D003790 ORTHO05D004481 1.1e-10 70.9 103 48.5
Thhalv10029363m.g Eutrema salsugineum HOM05D003790 ORTHO05D004481 3.2e-10 69.3 134 38.8
Zm00001eb014210 Zea mays HOM05D003790 ORTHO05D004481 1.2e-09 67.4 214 29.9
MD03G1297400 Malus domestica HOM05D003790 ORTHO05D004481 1.0e-08 64.3 213 29.6
CsaV3_4G001110 Cucumis sativus L. HOM05D003790 ORTHO05D044967 2.3e-08 63.2 163 33.7
COL.COLO4_09960 Corchorus olitorius HOM05D003790 ORTHO05D004481 3.0e-08 62.8 163 31.9
HPP92_011875 Vanilla planifolia HOM05D003790 ORTHO05D004481 8.8e-08 61.2 170 32.4
SGA_v2.0_scaffold334G49053 Striga asiatica HOM05D003790 ORTHO05D004481 1.5e-07 60.5 110 37.3
Eucgr.H01752 Eucalyptus grandis HOM05D003790 ORTHO05D004481 3.4e-07 59.3 99 43.4
Nn2g14986 Nelumbo nucifera HOM05D003790 ORTHO05D004481 3.4e-07 59.3 51 51.0
Sc17g0000580 Simmondsia chinensis HOM05D003790 ORTHO05D004481 3.4e-07 59.3 155 30.3
MELO3C017926.2 Cucumis melo HOM05D003790 ORTHO05D044967 4.4e-07 58.9 161 32.9
Zm00001eb396420 Zea mays HOM05D003790 ORTHO05D004481 7.5e-07 58.2 207 29.0


User provided reference genes

Program Settings