Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.L01654 Eucalyptus grandis HOM05D001445 ORTHO05D001261 2.4e-96 355.5 184 100.0
Eucgr.E01452 Eucalyptus grandis HOM05D001445 ORTHO05D001261 8.1e-44 181.0 154 62.3
Eucgr.D01180 Eucalyptus grandis HOM05D001445 ORTHO05D001261 5.0e-25 118.6 183 39.9
Eucgr.L02459 Eucalyptus grandis HOM05D001445 ORTHO05D001261 1.1e-24 117.5 183 40.4
Eucgr.D01181 Eucalyptus grandis HOM05D001445 ORTHO05D001261 4.2e-24 115.5 183 39.9
Eucgr.D01179 Eucalyptus grandis HOM05D001445 ORTHO05D001261 7.2e-24 114.8 183 38.8
QL04p026153 Quercus lobata HOM05D001445 ORTHO05D001261 4.1e-19 99.0 189 37.6
Eucgr.D01182 Eucalyptus grandis HOM05D001445 ORTHO05D001261 2.0e-18 96.7 129 40.3
TAR375G0055 Trochodendron aralioides HOM05D001445 ORTHO05D001261 2.0e-18 96.7 183 38.3
Prupe.2G115600 Prunus persica HOM05D001445 ORTHO05D001261 3.4e-18 95.9 159 37.7
Duzib133G0634 Durio zibethinus HOM05D001445 ORTHO05D001261 5.9e-18 95.1 188 37.8
COL.COLO4_12351 Corchorus olitorius HOM05D001445 ORTHO05D001261 1.1e-16 90.9 183 36.1
Sabra14G0032000 Salix brachista HOM05D001445 ORTHO05D001261 1.4e-16 90.5 185 34.6
Lsat_1_v5_gn_7_11841 Lactuca sativa HOM05D001445 ORTHO05D001261 1.9e-16 90.1 180 33.3
ECA236G4359 Erigeron canadensis HOM05D001445 ORTHO05D001261 2.5e-16 89.7 184 32.6
Potri.014G044100 Populus trichocarpa HOM05D001445 ORTHO05D001261 3.2e-16 89.4 178 33.7
Ciclev10023652m.g Citrus clementina HOM05D001445 ORTHO05D001261 9.4e-16 87.8 174 35.6
TWI59G0004 Tripterygium wilfordii HOM05D001445 ORTHO05D001261 1.2e-15 87.4 169 34.3
Oeu024392.1 Olea europaea HOM05D001445 ORTHO05D001261 1.6e-15 87.0 177 33.3
Thecc.01G402600 Theobroma cacao HOM05D001445 ORTHO05D001261 1.6e-15 87.0 181 34.8
TWI14G0207 Tripterygium wilfordii HOM05D001445 ORTHO05D001261 1.6e-15 87.0 168 35.7
RcHm_v2.0_Chr1g0344051 Rosa chinensis HOM05D001445 ORTHO05D001261 2.1e-15 86.7 170 34.7
CSS0020469 Camellia sinensis var. sinensis HOM05D001445 ORTHO05D001261 2.7e-15 86.3 196 35.2
ClCG06G000830 Citrullus lanatus HOM05D001445 ORTHO05D001261 3.6e-15 85.9 152 36.8
TPR.G39508 Trifolium pratense HOM05D001445 ORTHO05D001261 3.6e-15 85.9 180 35.0
Aqoxy3G02557 Aquilegia oxysepala HOM05D001445 ORTHO05D001261 4.7e-15 85.5 180 32.8
FvH4_7g08770 Fragaria vesca HOM05D001445 ORTHO05D001261 4.7e-15 85.5 181 33.7
FAN06G3435 Fragaria x ananassa HOM05D001445 ORTHO05D001261 4.7e-15 85.5 181 33.7
HanXRQChr04g0115481 Helianthus annuus HOM05D001445 ORTHO05D001261 4.7e-15 85.5 166 33.7
Medtr8g009300 Medicago truncatula HOM05D001445 ORTHO05D001261 7.9e-15 84.7 179 34.1
MELO3C022458.2 Cucumis melo HOM05D001445 ORTHO05D001261 1.0e-14 84.3 169 35.5
RcHm_v2.0_Chr1g0344001 Rosa chinensis HOM05D001445 ORTHO05D001261 1.0e-14 84.3 174 32.8
Solyc01g088590.5 Solanum lycopersicum HOM05D001445 ORTHO05D001261 1.4e-14 84.0 188 30.9
Atru.chr5.42 Acer truncatum HOM05D001445 ORTHO05D001261 1.8e-14 83.6 186 32.8
Atru.chr5.72 Acer truncatum HOM05D001445 ORTHO05D001261 1.8e-14 83.6 186 32.8
Psat4g219240 Pisum sativum HOM05D001445 ORTHO05D001261 1.8e-14 83.6 176 33.5
TAR375G0246 Trochodendron aralioides HOM05D001445 ORTHO05D001261 1.8e-14 83.6 174 34.5
MSTRG.4961 Avicennia marina HOM05D001445 ORTHO05D001261 2.3e-14 83.2 193 31.1
Nn1g02148 Nelumbo nucifera HOM05D001445 ORTHO05D001261 2.3e-14 83.2 181 33.7
CSS0045791 Camellia sinensis var. sinensis HOM05D001445 ORTHO05D001261 3.9e-14 82.4 181 33.7
MD02G1225200 Malus domestica HOM05D001445 ORTHO05D001261 3.9e-14 82.4 177 33.9
Oeu018160.1 Olea europaea HOM05D001445 ORTHO05D001261 3.9e-14 82.4 186 33.3
Oeu024391.1 Olea europaea HOM05D001445 ORTHO05D001261 3.9e-14 82.4 180 32.8
Cfa011022 Carpinus fangiana HOM05D001445 ORTHO05D001261 5.1e-14 82.0 183 33.9
Lalb_Chr12g0210341 Lupinus albus HOM05D001445 ORTHO05D001261 5.1e-14 82.0 181 32.0
Actinidia30953 Actinidia chinensis HOM05D001445 ORTHO05D001261 6.7e-14 81.6 177 33.9
Manes.05G058600 Manihot esculenta HOM05D001445 ORTHO05D001261 6.7e-14 81.6 188 36.2
TAR629G2132 Trochodendron aralioides HOM05D001445 ORTHO05D001261 6.7e-14 81.6 184 34.2
CsaV3_6G006700 Cucumis sativus L. HOM05D001445 ORTHO05D001261 1.1e-13 80.9 169 35.5
Sed0025882 Sechium edule HOM05D001445 ORTHO05D001261 1.5e-13 80.5 184 34.2
MSTRG.17105 Avicennia marina HOM05D001445 ORTHO05D001261 2.6e-13 79.7 176 29.0
Oeu002900.1 Olea europaea HOM05D001445 ORTHO05D001261 2.6e-13 79.7 162 30.9
PGSC0003DMG400001728 Solanum tuberosum HOM05D001445 ORTHO05D001261 2.6e-13 79.7 183 29.5
CiPaw.13G022000 Carya illinoinensis HOM05D001445 ORTHO05D001261 3.3e-13 79.3 184 32.6
CDE07G1929 Ceratophyllum demersum HOM05D001445 ORTHO05D001261 3.3e-13 79.3 155 32.3
SalBow5G1724 Salvia bowleyana HOM05D001445 ORTHO05D001261 3.3e-13 79.3 162 32.7
Sopen01g035440 Solanum pennellii HOM05D001445 ORTHO05D001261 3.3e-13 79.3 188 29.8
MD07G1088700 Malus domestica HOM05D001445 ORTHO05D001261 4.4e-13 79.0 178 34.3
Nn1g00664 Nelumbo nucifera HOM05D001445 ORTHO05D001261 4.4e-13 79.0 181 32.6
Sed0025391 Sechium edule HOM05D001445 ORTHO05D001261 7.4e-13 78.2 182 31.3
Gohir.D08G161800 Gossypium hirsutum HOM05D001445 ORTHO05D001261 9.7e-13 77.8 172 34.3
MBI04_g03340_MAGBIO Magnolia biondii HOM05D001445 ORTHO05D001261 9.7e-13 77.8 183 31.1
TAR629G3049 Trochodendron aralioides HOM05D001445 ORTHO05D001261 9.7e-13 77.8 176 33.5
VMungo0331G1992 Vigna mungo HOM05D001445 ORTHO05D001261 9.7e-13 77.8 188 31.4
PGSC0003DMG400001717 Solanum tuberosum HOM05D001445 ORTHO05D001261 1.3e-12 77.4 183 30.1
unitig_749.g13774 Utricularia gibba HOM05D001445 ORTHO05D001261 1.3e-12 77.4 166 29.5
Oeu037412.2 Olea europaea HOM05D004986 ORTHO05D005898 1.7e-12 77.0 162 30.2
Haze_02903 Corylus avellana HOM05D001445 ORTHO05D001261 2.2e-12 76.6 159 34.0
CsaV3_1G002510 Cucumis sativus L. HOM05D001445 ORTHO05D001261 2.2e-12 76.6 153 34.0
Lj3g0025567 Lotus japonicus HOM05D001445 ORTHO05D001261 2.2e-12 76.6 176 33.5
Cc02_g25640 Coffea canephora HOM05D001445 ORTHO05D001261 2.8e-12 76.3 183 28.4
Migut.N01714 Erythranthe guttata HOM05D001445 ORTHO05D001261 2.8e-12 76.3 178 29.8
Nn1g00650 Nelumbo nucifera HOM05D001445 ORTHO05D001261 2.8e-12 76.3 182 31.3
PSO541G5291 Papaver somniferum HOM05D001445 ORTHO05D001261 2.8e-12 76.3 189 29.1
RcHm_v2.0_Chr1g0344031 Rosa chinensis HOM05D001445 ORTHO05D001261 2.8e-12 76.3 181 31.5
Gorai.004G168200 Gossypium raimondii HOM05D001445 ORTHO05D001261 3.7e-12 75.9 192 32.8
MSTRG.17106 Avicennia marina HOM05D001445 ORTHO05D001261 4.8e-12 75.5 191 26.7
Glyma.03G103400 Glycine max HOM05D001445 ORTHO05D001261 4.8e-12 75.5 176 30.7
TAR375G0630 Trochodendron aralioides HOM05D001445 ORTHO05D001261 4.8e-12 75.5 172 30.2
HanXRQChr16g0522931 Helianthus annuus HOM05D001445 ORTHO05D001261 6.3e-12 75.1 177 31.1
Phvul.010G041500 Phaseolus vulgaris HOM05D001445 ORTHO05D001261 6.3e-12 75.1 186 32.3
TAR375G1152 Trochodendron aralioides HOM05D001445 ORTHO05D001261 6.3e-12 75.1 172 31.4
HanXRQChr07g0188521 Helianthus annuus HOM05D001445 ORTHO05D001261 8.2e-12 74.7 174 31.0
Lsat_1_v5_gn_4_38540 Lactuca sativa HOM05D001445 ORTHO05D001261 8.2e-12 74.7 174 32.8
Oeu024389.1 Olea europaea HOM05D001445 ORTHO05D001261 8.2e-12 74.7 180 29.4
PSO541G5973 Papaver somniferum HOM05D001445 ORTHO05D001261 8.2e-12 74.7 189 28.6
Sed0005894 Sechium edule HOM05D001445 ORTHO05D001261 1.1e-11 74.3 188 30.3
Migut.B01486 Erythranthe guttata HOM05D001445 ORTHO05D001261 1.8e-11 73.6 180 30.0
PSO081G0031 Papaver somniferum HOM05D001445 ORTHO05D001261 1.8e-11 73.6 182 31.3
vmacro21085 Vaccinium macrocarpon HOM05D001445 ORTHO05D001261 1.8e-11 73.6 189 28.6
Actinidia21612 Actinidia chinensis HOM05D001445 ORTHO05D001261 2.4e-11 73.2 181 32.6
PSO081G0055 Papaver somniferum HOM05D001445 ORTHO05D001261 2.4e-11 73.2 181 30.4
MELO3C006266.2 Cucumis melo HOM05D001445 ORTHO05D001261 3.1e-11 72.8 160 32.5
Dinv44021 Davidia involucrata HOM05D001445 ORTHO05D001261 3.1e-11 72.8 167 32.3
PSO081G0157 Papaver somniferum HOM05D001445 ORTHO05D001261 3.1e-11 72.8 179 33.5
PSO081G0174 Papaver somniferum HOM05D001445 ORTHO05D001261 3.1e-11 72.8 179 33.5
Nn1g00654 Nelumbo nucifera HOM05D001445 ORTHO05D001261 4.1e-11 72.4 182 33.0
MSTRG.20662 Avicennia marina HOM05D001445 ORTHO05D001261 5.3e-11 72.0 188 27.1
QL12p007390 Quercus lobata HOM05D001445 ORTHO05D001261 5.3e-11 72.0 191 29.8
FvH4_5g20940 Fragaria vesca HOM05D001445 ORTHO05D001261 7.0e-11 71.6 164 31.7
PSO026G0001 Papaver somniferum HOM05D001445 ORTHO05D001261 9.1e-11 71.2 189 29.1
ClCG00G004560 Citrullus lanatus HOM05D001445 ORTHO05D001261 1.2e-10 70.9 170 33.5
PGR004G0072 Punica granatum HOM05D001445 ORTHO05D001261 1.2e-10 70.9 184 32.1
CiPaw.14G016700 Carya illinoinensis HOM05D001445 ORTHO05D001261 2.0e-10 70.1 168 32.7
Gohir.A08G140800 Gossypium hirsutum HOM05D001445 ORTHO05D001261 2.0e-10 70.1 192 32.3
RcHm_v2.0_Chr7g0207981 Rosa chinensis HOM05D001445 ORTHO05D001261 2.0e-10 70.1 177 31.6
unitig_750.g28405 Utricularia gibba HOM05D001445 ORTHO05D001261 2.6e-10 69.7 178 29.2
RcHm_v2.0_Chr7g0207991 Rosa chinensis HOM05D001445 ORTHO05D001261 3.5e-10 69.3 167 30.5
PSO017G6871 Papaver somniferum HOM05D001445 ORTHO05D001261 4.5e-10 68.9 164 29.9
CiPaw.11G087100 Carya illinoinensis HOM05D001445 ORTHO05D001261 5.9e-10 68.6 173 30.6
PSO170G5213 Papaver somniferum HOM05D001445 ORTHO05D001261 5.9e-10 68.6 171 29.2
vmacro21086 Vaccinium macrocarpon HOM05D001445 ORTHO05D001261 5.9e-10 68.6 167 31.1
CANSAT25G2716 Cannabis sativa HOM05D001445 ORTHO05D001261 1.0e-09 67.8 204 27.9
Prupe.5G048900 Prunus persica HOM05D001445 ORTHO05D001261 1.0e-09 67.8 173 30.6
Solyc01g088575.1 Solanum lycopersicum HOM05D001445 ORTHO05D001261 1.0e-09 67.8 127 29.9
SalBow4G0032 Salvia bowleyana HOM05D001445 ORTHO05D001261 1.3e-09 67.4 178 29.2
PSO081G0137 Papaver somniferum HOM05D001445 ORTHO05D001261 1.7e-09 67.0 192 30.2
CsaV3_3G010420 Cucumis sativus L. HOM05D001445 ORTHO05D001261 2.2e-09 66.6 171 29.8
MD13G1149800 Malus domestica HOM05D001578 ORTHO05D001207 3.8e-09 65.9 175 29.7
Manes.15G171900 Manihot esculenta HOM05D001445 ORTHO05D001261 3.8e-09 65.9 150 33.3
FAN08G1111 Fragaria x ananassa HOM05D001445 ORTHO05D001261 6.5e-09 65.1 152 31.6
PSO782G2009 Papaver somniferum HOM05D001445 ORTHO05D001261 8.5e-09 64.7 181 29.8
FAN18G4149 Fragaria x ananassa HOM05D001445 ORTHO05D001261 1.5e-08 63.9 152 31.6
Aqoxy5G03639 Aquilegia oxysepala HOM05D001445 ORTHO05D001261 2.5e-08 63.2 131 35.1
FvH4_5g20930 Fragaria vesca HOM05D001445 ORTHO05D001261 2.5e-08 63.2 174 31.6
MD16G1150200 Malus domestica HOM05D001578 ORTHO05D001207 2.5e-08 63.2 179 29.6
FAN18G2178 Fragaria x ananassa HOM05D001445 ORTHO05D001261 4.2e-08 62.4 157 33.1
VMungo0251G1280 Vigna mungo HOM05D001445 ORTHO05D001261 5.5e-08 62.0 184 28.8
EL10Ac8g19001 Beta vulgaris HOM05D001445 ORTHO05D001261 7.2e-08 61.6 177 29.9
Rhsim11G0009400 Rhododendron simsii HOM05D001445 ORTHO05D001261 7.2e-08 61.6 173 28.9
Ciclev10033644m.g Citrus clementina HOM05D001445 ORTHO05D001261 9.4e-08 61.2 172 27.3
COL.COLO4_17127 Corchorus olitorius HOM05D001445 ORTHO05D001261 1.2e-07 60.8 167 30.5
FAN10G3032 Fragaria x ananassa HOM05D001445 ORTHO05D001261 1.2e-07 60.8 114 35.1
FAN01G2621 Fragaria x ananassa HOM05D001445 ORTHO05D001261 2.7e-07 59.7 114 35.1
Ah.07g199410 Amaranthus hybridus HOM05D001445 ORTHO05D001261 3.6e-07 59.3 182 29.1
SGA_v2.0_scaffold77G25252 Striga asiatica HOM05D001445 ORTHO05D001261 3.6e-07 59.3 185 26.5
Duzib084G0977 Durio zibethinus HOM05D001445 ORTHO05D001261 4.7e-07 58.9 162 29.0
FAN03G2044 Fragaria x ananassa HOM05D001445 ORTHO05D001261 4.7e-07 58.9 114 34.2
FAN10G1969 Fragaria x ananassa HOM05D001445 ORTHO05D001261 4.7e-07 58.9 114 34.2
Peaxi162Scf00084g00062 Petunia axillaris HOM05D001445 ORTHO05D001261 4.7e-07 58.9 148 27.0
Atru.chr4.3057 Acer truncatum HOM05D001578 ORTHO05D001207 6.1e-07 58.5 170 30.6
Potri.003G086500 Populus trichocarpa HOM05D001445 ORTHO05D001261 8.0e-07 58.2 182 29.1
Hma1.2p1_0173F.1_g076520 Hydrangea macrophylla HOM05D001445 ORTHO05D001261 1.0e-06 57.8 179 26.8
QL06p012819 Quercus lobata HOM05D001578 ORTHO05D001207 1.0e-06 57.8 176 27.8
SHI15103 Sapria himalayana HOM05D003556 ORTHO05D003404 1.0e-06 57.8 157 28.0
MD06G1041900 Malus domestica HOM05D001445 ORTHO05D001261 1.4e-06 57.4 183 30.1
PSO832G2602 Papaver somniferum HOM05D003556 ORTHO05D003404 1.4e-06 57.4 193 29.5
COL.COLO4_17126 Corchorus olitorius HOM05D001445 ORTHO05D001261 1.8e-06 57.0 167 28.7
Thecc.03G235500 Theobroma cacao HOM05D001445 ORTHO05D001261 1.8e-06 57.0 184 26.6
TAR636G0184 Trochodendron aralioides HOM05D004113 ORTHO05D005233 1.8e-06 57.0 163 31.3
TAR636G1790 Trochodendron aralioides HOM05D004113 ORTHO05D005233 1.8e-06 57.0 163 31.3
Aqoxy5G00783 Aquilegia oxysepala HOM05D003556 ORTHO05D003404 3.0e-06 56.2 164 25.6
MD06G1042400 Malus domestica HOM05D001445 ORTHO05D001261 3.0e-06 56.2 180 31.1
PSO210G6958 Papaver somniferum HOM05D003556 ORTHO05D003404 3.0e-06 56.2 165 30.3
Thecc.04G304700 Theobroma cacao HOM05D001578 ORTHO05D001207 4.0e-06 55.8 179 25.1
Zm00001eb229350 Zea mays HOM05D001445 ORTHO05D001261 4.0e-06 55.8 157 27.4
ClCG06G000840 Citrullus lanatus HOM05D001445 ORTHO05D001261 5.2e-06 55.5 180 27.8
TWI60G0816 Tripterygium wilfordii HOM05D003556 ORTHO05D003404 5.2e-06 55.5 188 23.9
TWI56G0141 Tripterygium wilfordii HOM05D001445 ORTHO05D003404 6.7e-06 55.1 130 29.2
Lj3P834T43 Lonicera japonica HOM05D001578 ORTHO05D001207 8.8e-06 54.7 131 31.3


User provided reference genes

Program Settings