Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.L01587 Eucalyptus grandis HOM05D001925 ORTHO05D005701 2.6e-308 1061.2 543 100.0
Eucgr.D01236 Eucalyptus grandis HOM05D001925 ORTHO05D005701 3.5e-276 954.5 543 91.9
CiPaw.01G062800 Carya illinoinensis HOM05D001925 ORTHO05D005701 1.2e-207 726.9 543 68.5
PGR004G0833 Punica granatum HOM05D001925 ORTHO05D005701 4.6e-204 714.9 543 67.4
QL04p053597 Quercus lobata HOM05D001925 ORTHO05D005701 4.6e-204 714.9 545 67.2
Haze_15511 Corylus avellana HOM05D001925 ORTHO05D005701 8.2e-201 704.1 543 66.1
Cfa003907 Carpinus fangiana HOM05D001925 ORTHO05D005701 1.8e-200 703.0 543 65.9
arahy.Tifrunner.gnm1.ann1.69YTHK Arachis hypogaea HOM05D001925 ORTHO05D005701 7.1e-197 691.0 540 65.0
Rhsim07G0013900 Rhododendron simsii HOM05D001925 ORTHO05D005701 1.6e-196 689.9 544 64.7
vmacro13268 Vaccinium macrocarpon HOM05D001925 ORTHO05D005701 2.1e-196 689.5 544 65.8
Potri.014G085900 Populus trichocarpa HOM05D001925 ORTHO05D005701 2.3e-195 686.0 545 66.8
Duzib138G1334 Durio zibethinus HOM05D001925 ORTHO05D005701 1.9e-194 682.9 543 65.0
Actinidia10039 Actinidia chinensis HOM05D001925 ORTHO05D005701 5.7e-194 681.4 548 63.9
CSS0009302 Camellia sinensis var. sinensis HOM05D001925 ORTHO05D005701 1.6e-193 679.9 545 65.3
CSS0022743 Camellia sinensis var. sinensis HOM05D001925 ORTHO05D005701 1.6e-193 679.9 545 65.3
Thecc.01G357800 Theobroma cacao HOM05D001925 ORTHO05D005701 6.3e-193 677.9 544 65.8
COL.COLO4_12725 Corchorus olitorius HOM05D001925 ORTHO05D005701 8.2e-193 677.6 543 65.6
CANSAT56G3724 Cannabis sativa HOM05D001925 ORTHO05D005701 1.4e-192 676.8 545 65.7
Gohir.A11G089700 Gossypium hirsutum HOM05D001925 ORTHO05D005701 3.1e-192 675.6 543 64.1
GSVIVG01008477001 Vitis vinifera HOM05D001925 ORTHO05D005701 3.1e-192 675.6 542 64.2
Nn6g33390 Nelumbo nucifera HOM05D001925 ORTHO05D005701 2.0e-191 672.9 544 62.7
Atru.chr5.509 Acer truncatum HOM05D001925 ORTHO05D005701 2.6e-191 672.5 541 63.8
Manes.05G033300 Manihot esculenta HOM05D001925 ORTHO05D005701 4.5e-191 671.8 543 64.5
Sabra14G0062200 Salix brachista HOM05D001925 ORTHO05D005701 1.3e-190 670.2 545 64.8
TAR636G2317 Trochodendron aralioides HOM05D001925 ORTHO05D005701 1.7e-190 669.8 543 64.6
Gorai.007G100400 Gossypium raimondii HOM05D001925 ORTHO05D005701 1.1e-189 667.2 543 63.7
Gohir.D11G094000 Gossypium hirsutum HOM05D001925 ORTHO05D005701 2.5e-189 666.0 543 63.7
Lj6A572T62 Lonicera japonica HOM05D001925 ORTHO05D005701 3.2e-189 665.6 550 63.3
Cpa.g.sc11.17 Carica papaya HOM05D001925 ORTHO05D005701 5.5e-189 664.8 543 63.2
Medtr7g077840 Medicago truncatula HOM05D001925 ORTHO05D005701 5.5e-189 664.8 543 62.8
Lj6A578T43 Lonicera japonica HOM05D001925 ORTHO05D005701 9.4e-189 664.1 550 63.1
MD01G1065000 Malus domestica HOM05D001925 ORTHO05D005701 3.6e-188 662.1 543 64.6
Ca_07928_v3 Cicer arietinum L. HOM05D001925 ORTHO05D005701 4.6e-188 661.8 541 62.1
Glyma.18G234000 Glycine max HOM05D001925 ORTHO05D005701 4.6e-188 661.8 543 61.9
TWI73G0882 Tripterygium wilfordii HOM05D001925 ORTHO05D005701 4.3e-186 655.2 534 62.9
VMungo1383G1901 Vigna mungo HOM05D001925 ORTHO05D005701 5.7e-186 654.8 543 61.7
MELO3C021204.2 Cucumis melo HOM05D001925 ORTHO05D005701 1.3e-185 653.7 543 63.4
Psat4g001160 Pisum sativum HOM05D001925 ORTHO05D005701 1.3e-185 653.7 545 61.5
arahy.Tifrunner.gnm1.ann1.NC5V2N Arachis hypogaea HOM05D001925 ORTHO05D005701 1.7e-185 653.3 547 61.8
arahy.Tifrunner.gnm1.ann1.9GVB5D Arachis hypogaea HOM05D001925 ORTHO05D005701 2.8e-185 652.5 547 61.2
Ciclev10019660m.g Citrus clementina HOM05D001925 ORTHO05D005701 2.8e-185 652.5 541 62.8
Lj1g0000866 Lotus japonicus HOM05D001925 ORTHO05D005701 6.3e-185 651.4 543 61.3
ClCG06G003620 Citrullus lanatus HOM05D001925 ORTHO05D005701 1.4e-184 650.2 543 62.6
FvH4_7g14490 Fragaria vesca HOM05D001925 ORTHO05D005701 1.8e-184 649.8 520 64.0
Prupe.2G172000 Prunus persica HOM05D001925 ORTHO05D005701 3.1e-184 649.0 506 67.2
RcHm_v2.0_Chr2g0161261 Rosa chinensis HOM05D001925 ORTHO05D005701 4.1e-184 648.7 519 64.2
Phvul.008G061800 Phaseolus vulgaris HOM05D001925 ORTHO05D005701 5.3e-184 648.3 544 61.2
Cc02_g38160 Coffea canephora HOM05D001925 ORTHO05D005701 9.1e-184 647.5 543 61.7
RcHm_v2.0_Chr1g0355901 Rosa chinensis HOM05D001925 ORTHO05D005701 2.6e-183 646.0 520 64.4
Sed0000605 Sechium edule HOM05D001925 ORTHO05D005701 1.3e-182 643.7 543 61.9
Peaxi162Scf00020g00723 Petunia axillaris HOM05D001925 ORTHO05D005701 1.9e-181 639.8 541 61.4
Migut.B01766 Erythranthe guttata HOM05D001925 ORTHO05D005701 3.0e-179 632.5 538 61.7
THA.LOC104825846 Tarenaya hassleriana HOM05D001925 ORTHO05D005701 3.9e-179 632.1 544 61.0
DCAR_007446 Daucus carota HOM05D001925 ORTHO05D005701 5.1e-179 631.7 543 61.7
HanXRQChr04g0121151 Helianthus annuus HOM05D001925 ORTHO05D005701 3.3e-178 629.0 547 60.5
Sopen01g038540 Solanum pennellii HOM05D001925 ORTHO05D005701 3.3e-178 629.0 541 60.8
Nitab4.5_0000583g0200 Nicotiana tabacum HOM05D001925 ORTHO05D005701 5.7e-178 628.2 542 61.4
AL7G22330 Arabidopsis lyrata HOM05D001925 ORTHO05D005701 2.2e-177 626.3 551 58.1
SalBow3G0216 Salvia bowleyana HOM05D001925 ORTHO05D005701 8.2e-177 624.4 529 61.4
PGSC0003DMG400000174 Solanum tuberosum HOM05D001925 ORTHO05D005701 8.2e-177 624.4 541 60.6
Solyc01g094760.3 Solanum lycopersicum HOM05D001925 ORTHO05D005701 1.4e-176 623.6 541 60.4
CAN.G78.90 Capsicum annuum HOM05D001925 ORTHO05D005701 7.0e-176 621.3 544 59.7
Oeu015817.1 Olea europaea HOM05D001925 ORTHO05D005701 2.6e-175 619.4 545 58.9
SGA_v2.0_scaffold4G02302 Striga asiatica HOM05D001925 ORTHO05D005701 7.7e-175 617.8 532 61.8
MBI04_g28752_MAGBIO Magnolia biondii HOM05D001925 ORTHO05D005701 2.5e-173 612.8 544 59.2
AT4G29910 Arabidopsis thaliana HOM05D001925 ORTHO05D005701 2.1e-172 609.8 542 56.8
ECA236G3836 Erigeron canadensis HOM05D001925 ORTHO05D005701 4.7e-172 608.6 541 59.3
BcaC08g44822 Brassica carinata HOM05D001925 ORTHO05D005701 1.4e-171 607.1 546 57.7
FAN03G1293 Fragaria x ananassa HOM05D001925 ORTHO05D005701 1.4e-171 607.1 520 61.3
Lalb_Chr13g0304081 Lupinus albus HOM05D001925 ORTHO05D005701 3.9e-171 605.5 543 58.2
FAN10G1478 Fragaria x ananassa HOM05D001925 ORTHO05D005701 5.2e-171 605.1 523 61.2
BcaB02g07622 Brassica carinata HOM05D001925 ORTHO05D005701 1.1e-170 604.0 546 57.5
C06p24120 Brassica napus HOM05D001925 ORTHO05D005701 1.5e-170 603.6 546 57.5
FAN06G1763 Fragaria x ananassa HOM05D001925 ORTHO05D005701 1.5e-170 603.6 520 61.0
BraA07t29988Z Brassica rapa HOM05D001925 ORTHO05D005701 2.6e-170 602.8 546 57.7
A07p23240 Brassica napus HOM05D001925 ORTHO05D005701 4.4e-170 602.1 546 57.7
BolC6t37570H Brassica oleracea HOM05D001925 ORTHO05D005701 4.4e-170 602.1 546 57.3
CARHR237820 Cardamine hirsuta HOM05D001925 ORTHO05D005701 7.4e-170 601.3 538 58.7
Sp5g05460 Schrenkiella parvula HOM05D001925 ORTHO05D005701 7.4e-170 601.3 546 57.7
FAN10G3665 Fragaria x ananassa HOM05D001925 ORTHO05D005701 9.7e-170 600.9 523 60.8
FAN06G3551 Fragaria x ananassa HOM05D001925 ORTHO05D005701 1.7e-169 600.1 520 60.8
Lj7A511T78 Lonicera japonica HOM05D001925 ORTHO05D005701 3.7e-169 599.0 528 60.6
Glyma.09G258700 Glycine max HOM05D001925 ORTHO05D005701 1.4e-168 597.0 543 57.8
Lsat_1_v5_gn_7_4881 Lactuca sativa HOM05D001925 ORTHO05D005701 1.6e-167 593.6 539 59.2
Aqoxy2G04021 Aquilegia oxysepala HOM05D001925 ORTHO05D005701 7.7e-167 591.3 548 57.1
Nitab4.5_0006018g0050 Nicotiana tabacum HOM05D001925 ORTHO05D005701 1.7e-166 590.1 519 60.9
CDE08G0676 Ceratophyllum demersum HOM05D001925 ORTHO05D005701 6.5e-166 588.2 538 57.6
TPR.G37845 Trifolium pratense HOM05D001925 ORTHO05D005701 6.5e-166 588.2 544 57.9
Hund16654 Selenicereus undatus HOM05D001925 ORTHO05D005701 3.2e-165 585.9 550 57.5
FAN01G0375 Fragaria x ananassa HOM05D001925 ORTHO05D005701 2.1e-164 583.2 521 59.5
Thhalv10005869m.g Eutrema salsugineum HOM05D001925 ORTHO05D005701 1.2e-162 577.4 546 55.7
BcaB02g07621 Brassica carinata HOM05D001925 ORTHO05D005701 4.4e-162 575.5 546 55.9
Ah.05g180520 Amaranthus hybridus HOM05D001925 ORTHO05D001453 4.1e-160 568.9 539 57.1
EL10Ac1g00402 Beta vulgaris HOM05D001925 ORTHO05D005701 1.0e-158 564.3 555 55.7
ATR0068G004 Amborella trichopoda HOM05D001925 ORTHO05D005701 6.5e-158 561.6 504 57.1
PSO384G0118 Papaver somniferum HOM05D001925 ORTHO05D005701 6.8e-155 551.6 572 53.7
Aa31LG2G20640 Aethionema arabicum HOM05D001925 ORTHO05D005701 3.1e-152 542.7 541 53.4
Dinv43827 Davidia involucrata HOM05D001925 ORTHO05D005701 1.4e-144 517.3 414 64.3
AUR62004371 Chenopodium quinoa HOM05D001925 ORTHO05D005701 4.1e-144 515.8 557 50.4
AUR62022580 Chenopodium quinoa HOM05D001925 ORTHO05D005701 1.3e-142 510.8 557 50.3
Sc01g0003490 Simmondsia chinensis HOM05D001925 ORTHO05D005701 1.7e-137 493.8 429 60.8
CsaV3_6G000620 Cucumis sativus L. HOM05D001925 ORTHO05D005701 5.4e-136 488.8 421 60.8
Carub.0007s1073 Capsella rubella HOM05D001925 ORTHO05D005701 4.7e-132 475.7 410 59.0
Os03g0759500 Oryza sativa ssp. japonica HOM05D001925 ORTHO05D005701 1.1e-125 454.5 493 50.3
Zm00001eb214490 Zea mays HOM05D001925 ORTHO05D005701 4.7e-124 449.1 548 47.6
SEGI_03119 Sequoiadendron giganteum HOM05D001925 ORTHO05D005701 1.7e-118 430.6 573 41.2
Carub.0002s1689 Capsella rubella HOM05D001925 ORTHO05D005701 2.0e-114 417.2 357 59.1
PSO339G3045 Papaver somniferum HOM05D001925 ORTHO05D005701 7.6e-114 415.2 509 47.5
arahy.Tifrunner.gnm1.ann1.IR4EKV Arachis hypogaea HOM05D001925 ORTHO05D005701 3.8e-113 412.9 319 66.1
arahy.Tifrunner.gnm1.ann1.SID920 Arachis hypogaea HOM05D001925 ORTHO05D005701 5.6e-109 399.1 425 51.5
BcaC07g40027 Brassica carinata HOM05D001925 ORTHO05D005701 7.3e-109 398.7 468 48.5
SMO147G0283 Selaginella moellendorffii HOM05D001925 ORTHO05D005701 4.2e-104 382.9 500 43.0
Oeu050467.2 Olea europaea HOM05D001925 ORTHO05D005701 5.1e-102 375.9 546 42.5
HPP92_019868 Vanilla planifolia HOM05D001925 ORTHO05D005701 3.3e-101 373.2 354 55.6
arahy.Tifrunner.gnm1.ann1.D25PMP Arachis hypogaea HOM05D001925 ORTHO05D005701 1.6e-92 344.4 424 46.0
AagrBONN_evm.TU.Sc2ySwM_368.2511 Anthoceros agrestis HOM05D001925 ORTHO05D005701 8.1e-92 342.0 492 41.1
Pp3c17_13600 Physcomitrium patens HOM05D001925 ORTHO05D005701 2.9e-89 333.6 515 39.6
ECA236G4017 Erigeron canadensis HOM05D001925 ORTHO05D005701 8.4e-89 332.0 312 57.4
Potri.001G135975 Populus trichocarpa HOM05D001925 ORTHO05D005701 1.0e-86 325.1 269 61.7
Mapoly0177s0008 Marchantia polymorpha HOM05D001925 ORTHO05D005701 6.9e-83 312.4 487 37.4
C08p32440 Brassica napus HOM05D001925 ORTHO05D005701 1.2e-82 311.6 504 40.1
BolC8t50859H Brassica oleracea HOM05D001925 ORTHO05D005701 2.6e-82 310.5 504 39.9
MD07G1135400 Malus domestica HOM05D001925 ORTHO05D005701 4.6e-79 299.7 346 50.0
TPR.G26686 Trifolium pratense HOM05D001925 ORTHO05D005701 4.8e-60 236.5 275 50.9
arahy.Tifrunner.gnm1.ann1.IM3547 Arachis hypogaea HOM05D001925 ORTHO05D005701 2.4e-59 234.2 200 61.0
arahy.Tifrunner.gnm1.ann1.FEJ64N Arachis hypogaea HOM05D001925 ORTHO05D005701 7.0e-59 232.6 200 60.5
Actinidia20895 Actinidia chinensis HOM05D001925 ORTHO05D005701 2.8e-52 210.7 246 50.0
Dinv43826 Davidia involucrata HOM05D001925 ORTHO05D005701 1.2e-37 162.2 110 77.3
MCO11G226 Micromonas commoda HOM05D001925 ORTHO05D005701 2.0e-34 151.4 586 26.8
TPR.G16202 Trifolium pratense HOM05D001925 ORTHO05D005701 2.7e-34 151.0 120 65.0
FvH4_2g10060 Fragaria vesca HOM05D001925 ORTHO05D005701 3.3e-32 144.1 191 47.6
BraA09t40455Z Brassica rapa HOM05D001925 ORTHO05D005701 4.3e-32 143.7 167 51.5
FAN24G1219 Fragaria x ananassa HOM05D001925 ORTHO05D005701 4.3e-32 143.7 104 68.3
C06p24140 Brassica napus HOM05D001925 ORTHO05D005701 1.4e-30 138.7 113 61.1
FAN15G3430 Fragaria x ananassa HOM05D001925 ORTHO05D005701 5.7e-29 133.3 104 64.4
FvH4_2g10061 Fragaria vesca HOM05D001925 ORTHO05D005701 6.4e-28 129.8 97 67.0
CBR_g58810 Chara braunii HOM05D001925 ORTHO05D005701 9.2e-27 125.9 514 28.6
Zm00001eb057980 Zea mays HOM05D001925 ORTHO05D005701 7.8e-26 122.9 452 30.3
A09p50030 Brassica napus HOM05D001925 ORTHO05D005701 2.3e-25 121.3 99 58.6
BcaC08g44824 Brassica carinata HOM05D001925 ORTHO05D005701 3.9e-25 120.6 114 54.4
arahy.Tifrunner.gnm1.ann1.ZHBQ27 Arachis hypogaea HOM05D002506 ORTHO05D002879 2.8e-23 114.4 87 71.3
PRCOL_00005952 Prasinoderma coloniale HOM05D001925 ORTHO05D005701 6.8e-22 109.8 498 24.5
A09p50040 Brassica napus HOM05D001925 ORTHO05D005701 1.2e-21 109.0 88 64.8
MBI04_g47116_MAGBIO Magnolia biondii HOM05D001925 ORTHO05D005701 1.2e-15 89.0 173 35.8
Thhalv10027287m.g Eutrema salsugineum HOM05D001925 ORTHO05D005701 1.2e-13 82.4 86 46.5
Cre07.g355200 Chlamydomonas reinhardtii HOM05D001925 ORTHO05D005701 2.7e-10 71.2 490 24.1
BcaC07g40074 Brassica carinata HOM05D001925 ORTHO05D005701 1.3e-09 68.9 81 48.1
C09p49930 Brassica napus HOM05D001925 ORTHO05D039571 2.3e-09 68.2 87 41.4
Cfa026360 Carpinus fangiana HOM05D001925 ORTHO05D005701 1.8e-06 58.5 520 23.5


User provided reference genes

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