Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.L01569 Eucalyptus grandis HOM05D004698 ORTHO05D005699 3.7e-82 308.1 153 100.0
Eucgr.B03647 Eucalyptus grandis HOM05D004698 ORTHO05D005699 1.1e-62 243.4 121 99.2
ClCG03G013670 Citrullus lanatus HOM05D004698 ORTHO05D005699 4.4e-43 178.3 153 62.1
CsaV3_1G042380 Cucumis sativus L. HOM05D004698 ORTHO05D005699 4.4e-43 178.3 153 62.1
MELO3C015673.2 Cucumis melo HOM05D004698 ORTHO05D005699 7.5e-43 177.6 153 61.4
Potri.003G212400 Populus trichocarpa HOM05D004698 ORTHO05D005699 6.3e-42 174.5 121 71.9
Potri.T056064 Populus trichocarpa HOM05D004698 ORTHO05D005699 6.3e-42 174.5 121 71.9
Sabra01G0010100 Salix brachista HOM05D004698 ORTHO05D005699 7.0e-41 171.0 121 71.9
Potri.001G013700 Populus trichocarpa HOM05D004698 ORTHO05D005699 2.7e-40 169.1 121 70.2
AL6G31140 Arabidopsis lyrata HOM05D004698 ORTHO05D005699 4.5e-40 168.3 120 67.5
Prupe.6G018000 Prunus persica HOM05D004698 ORTHO05D005699 1.0e-39 167.2 121 70.2
Carub.0006s1798 Capsella rubella HOM05D004698 ORTHO05D005699 1.3e-39 166.8 120 67.5
Sabra03G0155400 Salix brachista HOM05D004698 ORTHO05D005699 2.3e-39 166.0 153 60.1
Sabra03G0158600 Salix brachista HOM05D004698 ORTHO05D005699 2.3e-39 166.0 153 60.1
AT5G19630 Arabidopsis thaliana HOM05D004698 ORTHO05D005699 1.5e-38 163.3 120 65.0
Manes.14G015500 Manihot esculenta HOM05D004698 ORTHO05D005699 3.3e-38 162.2 121 68.6
PGR102G0099 Punica granatum HOM05D004698 ORTHO05D005699 5.6e-38 161.4 123 66.7
BcaC03g13695 Brassica carinata HOM05D004698 ORTHO05D005699 7.3e-38 161.0 120 65.0
Cfa009658 Carpinus fangiana HOM05D004698 ORTHO05D005699 7.3e-38 161.0 121 68.6
QL01p009119 Quercus lobata HOM05D004698 ORTHO05D005699 7.3e-38 161.0 121 66.9
BolC3t13583H Brassica oleracea HOM05D004698 ORTHO05D005699 1.6e-37 159.8 120 68.3
Thhalv10014585m.g Eutrema salsugineum HOM05D004698 ORTHO05D005699 1.6e-37 159.8 120 65.8
Sed0023233 Sechium edule HOM05D004698 ORTHO05D005699 1.6e-37 159.8 153 58.2
Ciclev10016541m.g Citrus clementina HOM05D004698 ORTHO05D005699 2.1e-37 159.5 123 62.6
Haze_23028 Corylus avellana HOM05D004698 ORTHO05D005699 2.1e-37 159.5 129 63.6
THA.LOC104811123 Tarenaya hassleriana HOM05D004698 ORTHO05D005699 2.1e-37 159.5 120 65.8
FvH4_3g44090 Fragaria vesca HOM05D004698 ORTHO05D005699 2.8e-37 159.1 121 67.8
Manes.10G126700 Manihot esculenta HOM05D004698 ORTHO05D005699 2.8e-37 159.1 121 66.9
FAN11G2375 Fragaria x ananassa HOM05D004698 ORTHO05D005699 3.6e-37 158.7 121 67.8
FAN16G2726 Fragaria x ananassa HOM05D004698 ORTHO05D005699 3.6e-37 158.7 121 67.8
RcHm_v2.0_Chr5g0080391 Rosa chinensis HOM05D004698 ORTHO05D005699 3.6e-37 158.7 122 66.4
C03p11130 Brassica napus HOM05D004698 ORTHO05D005699 4.7e-37 158.3 120 67.5
Dinv36316 Davidia involucrata HOM05D004698 ORTHO05D005699 4.7e-37 158.3 120 65.0
Manes.06G169600 Manihot esculenta HOM05D004698 ORTHO05D005699 4.7e-37 158.3 121 66.1
Nn7g36023 Nelumbo nucifera HOM05D004698 ORTHO05D005699 4.7e-37 158.3 121 64.5
CiPaw.13G168500 Carya illinoinensis HOM05D004698 ORTHO05D005699 1.4e-36 156.8 121 69.4
FAN25G1145 Fragaria x ananassa HOM05D004698 ORTHO05D005699 1.4e-36 156.8 121 66.9
Nn2g15650 Nelumbo nucifera HOM05D004698 ORTHO05D005699 1.4e-36 156.8 148 59.5
CANSAT54G0070 Cannabis sativa HOM05D004698 ORTHO05D005699 2.3e-36 156.0 153 54.2
CARHR193280 Cardamine hirsuta HOM05D004698 ORTHO05D005699 2.3e-36 156.0 120 65.0
FAN21G3006 Fragaria x ananassa HOM05D004698 ORTHO05D005699 2.3e-36 156.0 121 67.8
Duzib150G1219 Durio zibethinus HOM05D004698 ORTHO05D005699 3.0e-36 155.6 125 63.2
Dinv08060 Davidia involucrata HOM05D004698 ORTHO05D005699 4.0e-36 155.2 120 64.2
VMungo0720G2032 Vigna mungo HOM05D004698 ORTHO05D005699 4.0e-36 155.2 119 66.4
TWI60G0418 Tripterygium wilfordii HOM05D004698 ORTHO05D005699 6.8e-36 154.5 121 66.9
Duzib168G2110 Durio zibethinus HOM05D004698 ORTHO05D005699 1.5e-35 153.3 121 65.3
A03p09560 Brassica napus HOM05D004698 ORTHO05D005699 2.6e-35 152.5 120 65.0
BraA03t10273Z Brassica rapa HOM05D004698 ORTHO05D005699 2.6e-35 152.5 120 65.0
Glyma.20G247000 Glycine max HOM05D004698 ORTHO05D005699 2.6e-35 152.5 119 67.2
COL.COLO4_10392 Corchorus olitorius HOM05D004698 ORTHO05D005699 4.4e-35 151.8 121 64.5
Lalb_Chr02g0144411 Lupinus albus HOM05D004698 ORTHO05D005699 4.4e-35 151.8 124 63.7
Atru.chr3.2431 Acer truncatum HOM05D004698 ORTHO05D005699 7.5e-35 151.0 125 61.6
BcaB01g04838 Brassica carinata HOM05D004698 ORTHO05D005699 7.5e-35 151.0 119 63.9
Solyc01g006480.3 Solanum lycopersicum HOM05D004698 ORTHO05D005699 7.5e-35 151.0 124 58.1
Sopen01g002460 Solanum pennellii HOM05D004698 ORTHO05D005699 7.5e-35 151.0 124 58.1
PGSC0003DMG400032153 Solanum tuberosum HOM05D004698 ORTHO05D005699 7.5e-35 151.0 124 59.7
Aqoxy1G00174 Aquilegia oxysepala HOM05D004698 ORTHO05D005699 9.8e-35 150.6 117 64.1
Atru.chr3.2436 Acer truncatum HOM05D004698 ORTHO05D005699 1.3e-34 150.2 125 60.8
MD03G1018500 Malus domestica HOM05D004698 ORTHO05D005699 1.3e-34 150.2 122 65.6
Sc09g0000410 Simmondsia chinensis HOM05D004698 ORTHO05D005699 1.7e-34 149.8 120 64.2
CAN.G649.13 Capsicum annuum HOM05D004698 ORTHO05D005699 2.2e-34 149.4 118 58.5
Ca_11410_v3 Cicer arietinum L. HOM05D004698 ORTHO05D005699 2.2e-34 149.4 121 67.8
Lalb_Chr06g0164501 Lupinus albus HOM05D004698 ORTHO05D005699 3.7e-34 148.7 123 61.8
MBI01_g33892_MAGBIO Magnolia biondii HOM05D004698 ORTHO05D005699 3.7e-34 148.7 120 65.0
Lsat_1_v5_gn_9_26700 Lactuca sativa HOM05D004698 ORTHO05D005699 4.9e-34 148.3 117 60.7
arahy.Tifrunner.gnm1.ann1.5V818H Arachis hypogaea HOM05D004698 ORTHO05D005699 6.4e-34 147.9 121 64.5
arahy.Tifrunner.gnm1.ann1.Y8WF3A Arachis hypogaea HOM05D004698 ORTHO05D005699 6.4e-34 147.9 121 64.5
MD11G1019500 Malus domestica HOM05D004698 ORTHO05D005699 6.4e-34 147.9 111 68.5
Nitab4.5_0001146g0120 Nicotiana tabacum HOM05D004698 ORTHO05D005699 1.1e-33 147.1 120 56.7
Phvul.007G003200 Phaseolus vulgaris HOM05D004698 ORTHO05D005699 1.1e-33 147.1 119 66.4
Lj5g0001870 Lotus japonicus HOM05D004698 ORTHO05D005699 1.4e-33 146.7 121 65.3
Sp6g24760 Schrenkiella parvula HOM05D004698 ORTHO05D005699 1.4e-33 146.7 120 63.3
Aa31LG7G13160 Aethionema arabicum HOM05D004698 ORTHO05D005699 1.8e-33 146.4 120 61.7
Duzib170G0131 Durio zibethinus HOM05D004698 ORTHO05D005699 3.2e-33 145.6 121 62.8
Hund07554 Selenicereus undatus HOM05D004698 ORTHO05D005699 4.1e-33 145.2 115 63.5
Gohir.D05G069500 Gossypium hirsutum HOM05D004698 ORTHO05D005699 5.4e-33 144.8 121 64.5
Thecc.09G219100 Theobroma cacao HOM05D004698 ORTHO05D005699 5.4e-33 144.8 121 63.6
TAR633G2590 Trochodendron aralioides HOM05D004698 ORTHO05D005699 9.2e-33 144.1 116 61.2
Ah.06g193310 Amaranthus hybridus HOM05D004698 ORTHO05D005699 1.2e-32 143.7 115 60.0
Nitab4.5_0013751g0010 Nicotiana tabacum HOM05D004698 ORTHO05D005699 1.2e-32 143.7 120 56.7
PSO339G6590 Papaver somniferum HOM05D004698 ORTHO05D005699 1.2e-32 143.7 117 65.8
AUR62019223 Chenopodium quinoa HOM05D004698 ORTHO05D005699 1.6e-32 143.3 143 53.1
EL10Ac4g10324 Beta vulgaris HOM05D004698 ORTHO05D005699 2.0e-32 142.9 115 60.9
Gohir.A13G214800 Gossypium hirsutum HOM05D004698 ORTHO05D005699 2.0e-32 142.9 153 50.3
Peaxi162Scf00403g00114 Petunia axillaris HOM05D004698 ORTHO05D005699 2.0e-32 142.9 119 55.5
Gohir.A05G066748 Gossypium hirsutum HOM05D004698 ORTHO05D005699 2.7e-32 142.5 153 54.9
Gorai.009G070500 Gossypium raimondii HOM05D004698 ORTHO05D005699 2.7e-32 142.5 121 63.6
MSTRG.26088 Avicennia marina HOM05D004698 ORTHO05D005699 3.5e-32 142.1 115 60.9
Migut.K00041 Erythranthe guttata HOM05D004698 ORTHO05D005699 4.6e-32 141.7 117 61.5
Gorai.013G249300 Gossypium raimondii HOM05D004698 ORTHO05D005699 4.6e-32 141.7 121 58.7
Lj2C370G0 Lonicera japonica HOM05D004698 ORTHO05D005699 4.6e-32 141.7 116 61.2
Medtr8g092560 Medicago truncatula HOM05D004698 ORTHO05D005699 4.6e-32 141.7 122 63.1
ECA247G2042 Erigeron canadensis HOM05D004698 ORTHO05D005699 5.9e-32 141.4 121 58.7
Psat6g242840 Pisum sativum HOM05D004698 ORTHO05D005699 5.9e-32 141.4 141 56.0
Psat2g056640 Pisum sativum HOM05D004698 ORTHO05D005699 7.8e-32 141.0 141 56.0
Actinidia22026 Actinidia chinensis HOM05D004698 ORTHO05D005699 1.0e-31 140.6 119 57.1
AUR62000051 Chenopodium quinoa HOM05D004698 ORTHO05D005699 1.3e-31 140.2 115 60.0
CDE10G0673 Ceratophyllum demersum HOM05D004698 ORTHO05D005699 1.7e-31 139.8 116 62.1
HanXRQChr10g0300701 Helianthus annuus HOM05D004698 ORTHO05D005699 2.3e-31 139.4 117 59.8
BcaB05g23400 Brassica carinata HOM05D004698 ORTHO05D005699 3.0e-31 139.0 120 57.5
Nitab4.5_0000324g0230 Nicotiana tabacum HOM05D004698 ORTHO05D005699 3.9e-31 138.7 118 58.5
SGA_v2.0_scaffold94G28426 Striga asiatica HOM05D004698 ORTHO05D005699 8.6e-31 137.5 115 58.3
MD03G1115900 Malus domestica HOM05D004698 ORTHO05D005699 1.9e-30 136.3 122 59.0
Actinidia40436 Actinidia chinensis HOM05D004698 ORTHO05D005699 2.5e-30 136.0 115 55.7
Peaxi162Scf00258g00313 Petunia axillaris HOM05D004698 ORTHO05D005699 2.5e-30 136.0 118 55.9
TPR.G32598 Trifolium pratense HOM05D004698 ORTHO05D005699 2.5e-30 136.0 122 58.2
Hma1.2p1_0183F.1_g080820 Hydrangea macrophylla HOM05D004698 ORTHO05D005699 3.3e-30 135.6 116 61.2
Hund21659 Selenicereus undatus HOM05D004698 ORTHO05D005699 3.3e-30 135.6 115 58.3
Manes.08G045900 Manihot esculenta HOM05D004698 ORTHO05D005699 4.3e-30 135.2 116 56.0
Nitab4.5_0003890g0030 Nicotiana tabacum HOM05D004698 ORTHO05D005699 5.6e-30 134.8 118 57.6
Pp3c7_25270 Physcomitrium patens HOM05D004698 ORTHO05D005699 1.2e-29 133.7 108 61.1
Lju124A28T33 Lonicera japonica HOM05D004698 ORTHO05D005699 2.8e-29 132.5 115 56.5
Manes.08G046200 Manihot esculenta HOM05D004698 ORTHO05D005699 2.8e-29 132.5 116 55.2
DCAR_003213 Daucus carota HOM05D004698 ORTHO05D005699 3.6e-29 132.1 117 58.1
Sopen03g015850 Solanum pennellii HOM05D004698 ORTHO05D005699 4.7e-29 131.7 124 51.6
Solyc03g063290.3 Solanum lycopersicum HOM05D004698 ORTHO05D005699 6.2e-29 131.3 124 51.6
vmacro07926 Vaccinium macrocarpon HOM05D004698 ORTHO05D005699 1.4e-28 130.2 130 52.3
PGSC0003DMG400033344 Solanum tuberosum HOM05D004698 ORTHO05D005699 2.3e-28 129.4 122 51.6
HPP92_022782 Vanilla planifolia HOM05D004698 ORTHO05D005699 2.3e-28 129.4 116 61.2
Os02g0717100 Oryza sativa ssp. japonica HOM05D004698 ORTHO05D005699 3.1e-28 129.0 116 60.3
ATR0605G157 Amborella trichopoda HOM05D004698 ORTHO05D005699 5.2e-28 128.3 121 57.9
AagrBONN_evm.TU.Sc2ySwM_228.4678 Anthoceros agrestis HOM05D004698 ORTHO05D005699 5.2e-28 128.3 148 47.3
SalBow1G8278 Salvia bowleyana HOM05D004698 ORTHO05D005699 5.2e-28 128.3 115 60.0
SalBow1G8507 Salvia bowleyana HOM05D004698 ORTHO05D005699 5.2e-28 128.3 115 60.0
Ca_11408_v3 Cicer arietinum L. HOM05D004119 ORTHO05D004797 6.8e-28 127.9 112 59.8
Zm00001eb252760 Zea mays HOM05D004698 ORTHO05D005699 1.5e-27 126.7 117 57.3
SEGI_09892 Sequoiadendron giganteum HOM05D004698 ORTHO05D005699 4.4e-27 125.2 121 52.9
Sabra16G0026900 Salix brachista HOM05D004698 ORTHO05D005699 5.8e-27 124.8 130 53.1
RcHm_v2.0_Chr5g0080421 Rosa chinensis HOM05D004698 ORTHO05D005699 9.8e-27 124.0 85 70.6
unitig_0.g767 Utricularia gibba HOM05D004698 ORTHO05D005699 9.8e-27 124.0 115 55.7
CAN.G364.5 Capsicum annuum HOM05D004698 ORTHO05D005699 4.9e-26 121.7 118 51.7
SMO117G0218 Selaginella moellendorffii HOM05D004698 ORTHO05D005699 2.4e-25 119.4 116 51.7
Mapoly0046s0043 Marchantia polymorpha HOM05D004698 ORTHO05D005699 9.2e-25 117.5 116 50.9
Pp3c25_340 Physcomitrium patens HOM05D004698 ORTHO05D005699 5.0e-23 111.7 116 45.7
SHI30529 Sapria himalayana HOM05D004698 ORTHO05D005699 1.9e-22 109.8 123 48.8
Glyma.18G020100 Glycine max HOM05D004698 ORTHO05D005699 8.6e-15 84.3 96 47.9
GSVIVG01025354001 Vitis vinifera HOM05D004698 ORTHO05D005699 1.5e-14 83.6 45 84.4
RcHm_v2.0_Chr1g0343461 Rosa chinensis HOM05D004698 ORTHO05D005699 6.2e-13 78.2 60 66.7
Cc06_g16050 Coffea canephora HOM05D004698 ORTHO05D005699 1.5e-11 73.6 77 51.9
MD03G1017500 Malus domestica HOM05D004698 ORTHO05D005699 2.0e-11 73.2 45 77.8
Dinv15836 Davidia involucrata HOM05D004698 ORTHO05D005699 1.3e-10 70.5 48 68.8
BNapus_Darmor_BZH_scaffold_38p02250 Brassica napus HOM05D004698 ORTHO05D005699 4.9e-10 68.6 44 75.0
BolC2t06975H Brassica oleracea HOM05D004698 ORTHO05D005699 4.9e-10 68.6 44 75.0
Potri.006G191700 Populus trichocarpa HOM05D004698 ORTHO05D005699 4.9e-10 68.6 80 40.0
PRCOL_00006777 Prasinoderma coloniale HOM05D004698 ORTHO05D005699 2.7e-08 62.8 115 39.1
MD13G1112600 Malus domestica HOM05D000829 ORTHO05D000690 7.8e-08 61.2 47 63.8
Cc01_g03800 Coffea canephora HOM05D004698 ORTHO05D005699 4.3e-06 55.5 71 43.7


User provided reference genes

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