Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.L01544 Eucalyptus grandis HOM05D004847 ORTHO05D005856 3.1e-196 688.3 363 100.0
QL03p006978 Quercus lobata HOM05D004847 ORTHO05D005856 3.5e-131 472.2 358 74.6
Sabra05G0035400 Salix brachista HOM05D004847 ORTHO05D005856 9.5e-129 464.2 359 71.3
COL.COLO4_13475 Corchorus olitorius HOM05D004847 ORTHO05D005856 2.6e-126 456.1 365 72.1
Potri.005G033200 Populus trichocarpa HOM05D004847 ORTHO05D005856 3.4e-126 455.7 359 71.6
Thecc.05G303800 Theobroma cacao HOM05D004847 ORTHO05D005856 2.2e-125 453.0 364 71.2
Potri.013G022600 Populus trichocarpa HOM05D004847 ORTHO05D005856 2.9e-125 452.6 371 70.4
TWI56G1294 Tripterygium wilfordii HOM05D004847 ORTHO05D005856 9.2e-124 447.6 369 68.6
Gorai.004G241800 Gossypium raimondii HOM05D004847 ORTHO05D005856 7.8e-123 444.5 350 72.3
Prupe.6G326100 Prunus persica HOM05D004847 ORTHO05D005856 1.7e-122 443.4 361 69.8
Gohir.D11G275000 Gossypium hirsutum HOM05D004847 ORTHO05D005856 3.0e-122 442.6 385 66.2
Gorai.007G296800 Gossypium raimondii HOM05D004847 ORTHO05D005856 3.0e-122 442.6 385 66.2
Gohir.A11G264800 Gossypium hirsutum HOM05D004847 ORTHO05D005856 1.1e-121 440.7 385 66.0
Gohir.A08G210800 Gossypium hirsutum HOM05D004847 ORTHO05D005856 6.8e-119 431.4 350 70.6
CiPaw.08G164900 Carya illinoinensis HOM05D004847 ORTHO05D005856 1.2e-118 430.6 377 69.2
TAR633G0229 Trochodendron aralioides HOM05D004847 ORTHO05D005856 7.5e-118 427.9 348 69.8
GSVIVG01000048001 Vitis vinifera HOM05D004847 ORTHO05D005856 7.5e-118 427.9 351 69.5
Duzib106G0633 Durio zibethinus HOM05D004847 ORTHO05D005856 9.9e-118 427.6 390 64.9
Duzib128G0091 Durio zibethinus HOM05D004847 ORTHO05D005856 2.2e-117 426.4 363 67.5
TAR362G0189 Trochodendron aralioides HOM05D004847 ORTHO05D005856 1.4e-116 423.7 358 67.6
Sabra13G0024700 Salix brachista HOM05D004847 ORTHO05D005856 3.2e-116 422.5 435 59.3
FAN05G5722 Fragaria x ananassa HOM05D004847 ORTHO05D005856 4.1e-116 422.2 368 67.1
RcHm_v2.0_Chr3g0454731 Rosa chinensis HOM05D004847 ORTHO05D005856 7.1e-116 421.4 367 67.8
FAN05G5436 Fragaria x ananassa HOM05D004847 ORTHO05D005856 1.2e-115 420.6 368 66.8
Manes.09G166900 Manihot esculenta HOM05D004847 ORTHO05D005856 2.1e-115 419.9 370 64.9
MD12G1219500 Malus domestica HOM05D004847 ORTHO05D005856 1.5e-113 413.7 366 66.4
CANSAT54G0893 Cannabis sativa HOM05D004847 ORTHO05D005856 2.5e-113 412.9 367 65.1
FvH4_6g05820 Fragaria vesca HOM05D004847 ORTHO05D005856 2.1e-112 409.8 368 65.8
FAN14G3900 Fragaria x ananassa HOM05D004847 ORTHO05D005856 2.1e-112 409.8 368 65.8
Haze_04198 Corylus avellana HOM05D004847 ORTHO05D005856 5.2e-111 405.2 361 67.6
PGR083G0144 Punica granatum HOM05D004847 ORTHO05D005856 5.2e-111 405.2 374 66.3
Atru.chr2.410 Acer truncatum HOM05D004847 ORTHO05D005856 2.6e-110 402.9 385 63.6
Ca_10113_v3 Cicer arietinum L. HOM05D004847 ORTHO05D005856 1.1e-108 397.5 360 64.4
Ciclev10003680m.g Citrus clementina HOM05D004847 ORTHO05D001311 2.4e-108 396.4 390 61.3
Cc11_g03560 Coffea canephora HOM05D004847 ORTHO05D005856 5.4e-108 395.2 371 62.5
Phvul.007G179800 Phaseolus vulgaris HOM05D004847 ORTHO05D005856 5.4e-108 395.2 392 59.7
CiPaw.07G017600 Carya illinoinensis HOM05D004847 ORTHO05D005856 4.6e-107 392.1 322 69.3
arahy.Tifrunner.gnm1.ann1.91A0PW Arachis hypogaea HOM05D004847 ORTHO05D005856 6.0e-107 391.7 408 58.8
MD04G1205400 Malus domestica HOM05D004847 ORTHO05D005856 1.7e-106 390.2 364 63.7
arahy.Tifrunner.gnm1.ann1.WTPV8B Arachis hypogaea HOM05D004847 ORTHO05D005856 6.6e-106 388.3 407 58.5
CSS0010861 Camellia sinensis var. sinensis HOM05D004847 ORTHO05D005856 9.6e-105 384.4 352 65.3
Dinv23942 Davidia involucrata HOM05D004847 ORTHO05D005856 2.8e-104 382.9 369 62.6
Lalb_Chr04g0260731 Lupinus albus HOM05D004847 ORTHO05D005856 4.7e-104 382.1 334 65.6
Glyma.10G154100 Glycine max HOM05D004847 ORTHO05D005856 8.1e-104 381.3 387 59.4
Nn4g26247 Nelumbo nucifera HOM05D004847 ORTHO05D005856 2.4e-103 379.8 358 62.6
Psat0s3135g0240 Pisum sativum HOM05D004847 ORTHO05D005856 4.0e-103 379.0 387 59.2
Gohir.D08G227600 Gossypium hirsutum HOM05D004847 ORTHO05D005856 9.0e-103 377.9 291 72.5
PSO832G1768 Papaver somniferum HOM05D004847 ORTHO05D005856 9.0e-103 377.9 369 62.3
Glyma.20G234200 Glycine max HOM05D004847 ORTHO05D005856 5.8e-102 375.2 384 58.9
Aqoxy5G00505 Aquilegia oxysepala HOM05D004847 ORTHO05D005856 9.9e-102 374.4 378 59.8
PSO210G5284 Papaver somniferum HOM05D004847 ORTHO05D005856 2.9e-101 372.9 369 61.8
Hma1.2p1_0928F.1_g237810 Hydrangea macrophylla HOM05D004847 ORTHO05D005856 4.9e-101 372.1 364 62.4
DCAR_003332 Daucus carota HOM05D004847 ORTHO05D005856 6.4e-101 371.7 360 60.8
Nitab4.5_0000137g0030 Nicotiana tabacum HOM05D004847 ORTHO05D005856 6.4e-101 371.7 416 56.7
TWI12G0805 Tripterygium wilfordii HOM05D004847 ORTHO05D005856 6.4e-101 371.7 367 61.3
Peaxi162Scf00037g00632 Petunia axillaris HOM05D004847 ORTHO05D005856 6.0e-99 365.2 417 54.7
CsaV3_2G005250 Cucumis sativus L. HOM05D004847 ORTHO05D005856 1.0e-98 364.4 421 55.6
Nitab4.5_0003156g0010 Nicotiana tabacum HOM05D004847 ORTHO05D005856 1.0e-98 364.4 417 55.9
vmacro19624 Vaccinium macrocarpon HOM05D004847 ORTHO05D005856 1.0e-98 364.4 365 61.6
SalBow3G4161 Salvia bowleyana HOM05D004847 ORTHO05D005856 2.3e-98 363.2 372 58.6
THA.LOC104818696 Tarenaya hassleriana HOM05D004847 ORTHO05D005856 3.0e-98 362.8 421 55.8
VMungo0720G3140 Vigna mungo HOM05D004847 ORTHO05D005856 3.3e-97 359.4 362 59.1
Actinidia24643 Actinidia chinensis HOM05D004847 ORTHO05D005856 2.8e-96 356.3 367 61.0
Lalb_Chr02g0148231 Lupinus albus HOM05D004847 ORTHO05D005856 3.1e-95 352.8 378 57.7
CAN.G1034.25 Capsicum annuum HOM05D004847 ORTHO05D005856 9.0e-95 351.3 471 48.8
Lj5A533T17 Lonicera japonica HOM05D004847 ORTHO05D005856 1.2e-94 350.9 369 60.2
Hund07068 Selenicereus undatus HOM05D004847 ORTHO05D005856 1.5e-94 350.5 379 58.0
PGSC0003DMG401024742 Solanum tuberosum HOM05D004847 ORTHO05D005856 1.5e-94 350.5 465 49.0
MELO3C004268.2 Cucumis melo HOM05D004847 ORTHO05D005856 9.9e-94 347.8 424 53.5
Sc16g0008460 Simmondsia chinensis HOM05D004847 ORTHO05D005856 1.7e-93 347.1 381 56.2
Sopen01g042820 Solanum pennellii HOM05D004847 ORTHO05D005856 1.9e-92 343.6 497 46.1
Solyc01g099270.2 Solanum lycopersicum HOM05D004847 ORTHO05D005856 3.2e-92 342.8 497 46.1
BraSC132t45510Z Brassica rapa HOM05D004847 ORTHO05D005856 9.3e-92 341.3 451 49.2
CSS0017838 Camellia sinensis var. sinensis HOM05D004847 ORTHO05D005856 4.6e-91 339.0 363 57.9
Migut.B01038 Erythranthe guttata HOM05D004847 ORTHO05D005856 4.6e-91 339.0 352 59.4
BNapus_Darmor_BZH_scaffold_114p00170 Brassica napus HOM05D004847 ORTHO05D005856 2.3e-90 336.7 453 48.6
Lsat_1_v5_gn_9_123520 Lactuca sativa HOM05D004847 ORTHO05D005856 3.3e-89 332.8 353 57.2
AUR62000830 Chenopodium quinoa HOM05D004847 ORTHO05D005856 4.3e-89 332.4 377 56.8
A05p42290 Brassica napus HOM05D004847 ORTHO05D005856 9.6e-89 331.3 456 47.6
BolC1t05700H Brassica oleracea HOM05D004847 ORTHO05D005856 3.7e-88 329.3 449 48.1
Sed0004129 Sechium edule HOM05D004847 ORTHO05D005856 8.1e-88 328.2 448 50.2
Medtr7g113510 Medicago truncatula HOM05D004847 ORTHO05D005856 2.4e-87 326.6 423 49.4
EL10Ac4g09352 Beta vulgaris HOM05D004847 ORTHO05D005856 3.1e-87 326.2 340 60.0
BraA05t23024Z Brassica rapa HOM05D004847 ORTHO05D005856 3.1e-87 326.2 455 47.5
MBI19_g05601_MAGBIO Magnolia biondii HOM05D004847 ORTHO05D005856 1.2e-86 324.3 369 55.6
MSTRG.27999 Avicennia marina HOM05D004847 ORTHO05D005856 1.5e-86 323.9 320 61.2
C05p61870 Brassica napus HOM05D004847 ORTHO05D005856 1.5e-86 323.9 451 49.4
BolC5t34847H Brassica oleracea HOM05D004847 ORTHO05D005856 1.5e-86 323.9 451 49.4
Thhalv10020613m.g Eutrema salsugineum HOM05D004847 ORTHO05D005856 1.5e-86 323.9 483 46.2
DCAR_029413 Daucus carota HOM05D004847 ORTHO05D005856 3.4e-86 322.8 374 53.7
CARHR079680 Cardamine hirsuta HOM05D004847 ORTHO05D005856 1.7e-85 320.5 484 46.1
Lj5g0019148 Lotus japonicus HOM05D004847 ORTHO05D005856 3.8e-85 319.3 445 49.4
AT3G05330 Arabidopsis thaliana HOM05D004847 ORTHO05D005856 6.4e-85 318.5 414 48.8
Oeu017487.1 Olea europaea HOM05D004847 ORTHO05D005856 1.4e-84 317.4 330 60.0
AUR62005144 Chenopodium quinoa HOM05D004847 ORTHO05D005856 2.4e-84 316.6 366 55.5
Ah.06g189340 Amaranthus hybridus HOM05D004847 ORTHO05D005856 4.2e-84 315.8 377 55.7
Migut.N02003 Erythranthe guttata HOM05D004847 ORTHO05D005856 4.2e-84 315.8 377 55.2
AL3G15780 Arabidopsis lyrata HOM05D004847 ORTHO05D005856 1.2e-83 314.3 465 46.0
ECA240G3864 Erigeron canadensis HOM05D004847 ORTHO05D005856 4.6e-83 312.4 339 56.9
Carub.0003s0461 Capsella rubella HOM05D004847 ORTHO05D005856 1.0e-82 311.2 480 45.4
HanXRQChr09g0248411 Helianthus annuus HOM05D004847 ORTHO05D005856 1.8e-82 310.5 380 54.5
Migut.O00711 Erythranthe guttata HOM05D004847 ORTHO05D005856 3.7e-80 302.8 379 54.1
Sp3g04200 Schrenkiella parvula HOM05D004847 ORTHO05D005856 8.2e-80 301.6 475 45.3
ClCG02G015810 Citrullus lanatus HOM05D000141 ORTHO05D001311 4.0e-79 299.3 340 57.1
Rhsim05G0141800 Rhododendron simsii HOM05D004847 ORTHO05D005856 6.9e-79 298.5 367 53.7
Aa31LG5G15720 Aethionema arabicum HOM05D000141 ORTHO05D001311 1.2e-78 297.7 418 46.7
TPR.G33190 Trifolium pratense HOM05D004847 ORTHO05D005856 2.7e-75 286.6 466 44.4
BcaC05g30136 Brassica carinata HOM05D004847 ORTHO05D005856 1.3e-72 277.7 331 54.4
Glyma.19G235300 Glycine max HOM05D004847 ORTHO05D005856 1.3e-72 277.7 344 54.9
CDE10G0375 Ceratophyllum demersum HOM05D004847 ORTHO05D005856 1.5e-70 270.8 324 54.0
Phvul.006G091600 Phaseolus vulgaris HOM05D004847 ORTHO05D005856 1.3e-69 267.7 398 48.7
HPP92_003277 Vanilla planifolia HOM05D004847 ORTHO05D005856 2.9e-69 266.5 343 48.4
TPR.G11389 Trifolium pratense HOM05D004847 ORTHO05D005856 7.2e-68 261.9 266 61.3
Medtr1g082940 Medicago truncatula HOM05D004847 ORTHO05D005856 1.2e-67 261.2 328 52.4
Cpa.g.sc48.48 Carica papaya HOM05D004847 ORTHO05D005856 1.8e-66 257.3 280 61.8
Actinidia28666 Actinidia chinensis HOM05D004847 ORTHO05D005856 1.1e-65 254.6 350 53.1
Zm00001eb286860 Zea mays HOM05D004847 ORTHO05D005856 5.0e-61 239.2 425 46.1
ATR0626G214 Amborella trichopoda HOM05D004847 ORTHO05D005856 4.7e-59 232.6 414 41.1
BcaC05g30154 Brassica carinata HOM05D004847 ORTHO05D005856 6.3e-56 222.2 260 53.1
Glyma.03G237700 Glycine max HOM05D004847 ORTHO05D005856 7.0e-55 218.8 314 49.7
CDE10G0883 Ceratophyllum demersum HOM05D004847 ORTHO05D005856 1.2e-54 218.0 435 39.1
Ca_09350_v3 Cicer arietinum L. HOM05D004847 ORTHO05D005856 8.5e-53 211.8 306 50.0
SGA_v2.0_scaffold81G26072 Striga asiatica HOM05D004847 ORTHO05D005856 1.9e-52 210.7 377 45.4
VMungo0540G0069 Vigna mungo HOM05D004847 ORTHO05D005856 9.4e-52 208.4 340 46.5
SGA_v2.0_scaffold80G25911 Striga asiatica HOM05D004847 ORTHO05D005856 6.3e-48 195.7 370 42.2
TPR.G6113 Trifolium pratense HOM05D006420 ORTHO05D008009 2.6e-46 190.3 133 72.9
Manes.08G120800 Manihot esculenta HOM05D004847 ORTHO05D005856 4.5e-46 189.5 364 42.6
Psat0s212g0040 Pisum sativum HOM05D004847 ORTHO05D005856 1.0e-37 161.8 331 40.2
Os02g0459300 Oryza sativa ssp. japonica HOM05D004847 ORTHO05D005856 1.1e-36 158.3 340 42.4
CDE10G0745 Ceratophyllum demersum HOM05D004847 ORTHO05D005856 3.8e-29 133.3 157 54.1
Cpa.g.sc48.49 Carica papaya HOM05D004847 ORTHO05D005856 4.0e-26 123.2 76 80.3
GSVIVG01000050001 Vitis vinifera HOM05D000141 ORTHO05D001311 1.3e-24 118.2 97 62.9
SEGI_00809 Sequoiadendron giganteum HOM05D004847 ORTHO05D005856 3.5e-22 110.2 148 43.2
SHI18142 Sapria himalayana HOM05D000141 ORTHO05D001311 4.3e-20 103.2 347 34.9
Gohir.D12G153350 Gossypium hirsutum HOM05D004847 ORTHO05D005856 1.6e-19 101.3 71 67.6
Zm00001eb269750 Zea mays HOM05D004847 ORTHO05D005856 8.0e-19 99.0 216 39.4
Ca_09354_v3 Cicer arietinum L. HOM05D004847 ORTHO05D005856 3.1e-18 97.1 66 71.2
Gorai.004G124500 Gossypium raimondii HOM05D004847 ORTHO05D005856 6.8e-18 95.9 69 59.4
Actinidia19789 Actinidia chinensis HOM05D004847 ORTHO05D005856 9.8e-17 92.0 83 63.9
MD02G1275700 Malus domestica HOM05D004847 ORTHO05D005856 9.8e-17 92.0 66 63.6
MD00G1120700 Malus domestica HOM05D004847 ORTHO05D005856 1.7e-16 91.3 66 63.6
SEGI_03169 Sequoiadendron giganteum HOM05D004847 ORTHO05D005856 3.2e-15 87.0 166 39.8
Psat3g073720 Pisum sativum HOM05D004847 ORTHO05D005856 1.2e-14 85.1 117 44.4
Gohir.D08G115550 Gossypium hirsutum HOM05D004847 ORTHO05D005856 2.0e-14 84.3 60 63.3
Zm00001eb092520 Zea mays HOM05D004847 ORTHO05D005856 5.6e-12 76.3 193 38.3
C05p10080 Brassica napus HOM05D004847 ORTHO05D005856 1.6e-11 74.7 235 36.2
Lsat_1_v5_gn_8_18301 Lactuca sativa HOM05D004847 ORTHO05D005856 1.8e-10 71.2 89 48.3
BolC1t05697H Brassica oleracea HOM05D004847 ORTHO05D005856 2.6e-09 67.4 109 44.0
Gohir.A01G045000 Gossypium hirsutum HOM05D004847 ORTHO05D005856 2.9e-08 63.9 51 68.6
Gohir.D09G147300 Gossypium hirsutum HOM05D004847 ORTHO05D005856 2.9e-08 63.9 51 68.6
Gohir.A10G185000 Gossypium hirsutum HOM05D000639 ORTHO05D020118 3.7e-08 63.5 51 68.6
Gohir.D07G076600 Gossypium hirsutum HOM05D000639 ORTHO05D020118 6.4e-08 62.8 51 66.7
Gohir.D10G149400 Gossypium hirsutum HOM05D000639 ORTHO05D020118 8.3e-08 62.4 51 66.7
Actinidia19788 Actinidia chinensis HOM05D004847 ORTHO05D005856 2.4e-07 60.8 36 77.8
Gohir.D04G107600 Gossypium hirsutum HOM05D004847 ORTHO05D005856 2.1e-06 57.8 90 48.9
Gohir.D10G096100 Gossypium hirsutum HOM05D004847 ORTHO05D005856 2.1e-06 57.8 90 48.9


User provided reference genes

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