Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.L01522 Eucalyptus grandis HOM05D006466 ORTHO05D008084 2.9e-58 228.4 120 100.0
Eucgr.D02058 Eucalyptus grandis HOM05D006466 ORTHO05D008084 8.5e-18 94.0 50 92.0
ClCG01G004000 Citrullus lanatus HOM05D006466 ORTHO05D008084 1.9e-17 92.8 51 88.2
MELO3C005537.2 Cucumis melo HOM05D006466 ORTHO05D008084 1.9e-17 92.8 51 88.2
PGR031G1557 Punica granatum HOM05D006466 ORTHO05D008084 1.9e-17 92.8 51 88.2
Gohir.A12G217700 Gossypium hirsutum HOM05D006466 ORTHO05D008084 2.5e-17 92.4 51 88.2
Gohir.D12G220200 Gossypium hirsutum HOM05D006466 ORTHO05D008084 2.5e-17 92.4 51 88.2
Gorai.008G235900 Gossypium raimondii HOM05D006466 ORTHO05D008084 2.5e-17 92.4 51 88.2
Sed0012351 Sechium edule HOM05D006466 ORTHO05D008084 2.5e-17 92.4 51 88.2
Thecc.03G253200 Theobroma cacao HOM05D006466 ORTHO05D008084 2.5e-17 92.4 51 88.2
Cfa012739 Carpinus fangiana HOM05D006466 ORTHO05D008084 5.5e-17 91.3 51 88.2
Ciclev10005762m.g Citrus clementina HOM05D006466 ORTHO05D008084 5.5e-17 91.3 51 86.3
Haze_07889 Corylus avellana HOM05D006466 ORTHO05D008084 5.5e-17 91.3 51 88.2
CsaV3_5G004180 Cucumis sativus L. HOM05D006466 ORTHO05D008084 5.5e-17 91.3 51 86.3
Sed0026776 Sechium edule HOM05D006466 ORTHO05D008084 5.5e-17 91.3 51 86.3
GSVIVG01001313001 Vitis vinifera HOM05D006466 ORTHO05D008084 5.5e-17 91.3 51 86.3
CDE02G4728 Ceratophyllum demersum HOM05D006466 ORTHO05D008084 7.2e-17 90.9 51 84.3
Eucgr.D02068 Eucalyptus grandis HOM05D006466 ORTHO05D008084 7.2e-17 90.9 51 86.3
Nn1g01036 Nelumbo nucifera HOM05D006466 ORTHO05D008084 9.4e-17 90.5 51 84.3
Nn6g33981 Nelumbo nucifera HOM05D006466 ORTHO05D008084 9.4e-17 90.5 66 71.2
MSTRG.12091 Avicennia marina HOM05D006466 ORTHO05D008084 1.2e-16 90.1 51 84.3
CiPaw.11G153200 Carya illinoinensis HOM05D006466 ORTHO05D008084 1.2e-16 90.1 51 84.3
Lj8A452G56 Lonicera japonica HOM05D006466 ORTHO05D008084 1.2e-16 90.1 51 84.3
QL12p012545 Quercus lobata HOM05D006466 ORTHO05D008084 1.2e-16 90.1 51 84.3
TWI81G0148 Tripterygium wilfordii HOM05D006466 ORTHO05D008084 1.6e-16 89.7 51 84.3
Aqoxy6G01886 Aquilegia oxysepala HOM05D006466 ORTHO05D008084 2.1e-16 89.4 51 82.4
Actinidia27463 Actinidia chinensis HOM05D006466 ORTHO05D008084 2.7e-16 89.0 50 86.0
MD04G1088600 Malus domestica HOM05D006466 ORTHO05D008084 3.6e-16 88.6 51 82.4
Manes.01G079600 Manihot esculenta HOM05D006466 ORTHO05D008084 3.6e-16 88.6 51 82.4
Prupe.5G071300 Prunus persica HOM05D006466 ORTHO05D008084 3.6e-16 88.6 51 82.4
Rhsim07G0108000 Rhododendron simsii HOM05D006466 ORTHO05D008084 3.6e-16 88.6 51 82.4
Atru.chr2.1841 Acer truncatum HOM05D006466 ORTHO05D008084 4.7e-16 88.2 50 86.0
Ah.12g056750 Amaranthus hybridus HOM05D006466 ORTHO05D008084 6.1e-16 87.8 51 80.4
Nitab4.5_0000312g0170 Nicotiana tabacum HOM05D006466 ORTHO05D008084 6.1e-16 87.8 51 80.4
Nitab4.5_0008481g0010 Nicotiana tabacum HOM05D006466 ORTHO05D008084 6.1e-16 87.8 51 80.4
HPP92_014482 Vanilla planifolia HOM05D006466 ORTHO05D008084 6.1e-16 87.8 76 61.8
ATR0193G040 Amborella trichopoda HOM05D006466 ORTHO05D008084 8.0e-16 87.4 51 82.4
CANSAT21G1921 Cannabis sativa HOM05D006466 ORTHO05D008084 8.0e-16 87.4 51 80.4
Dinv39131 Davidia involucrata HOM05D006466 ORTHO05D008084 1.0e-15 87.0 51 80.4
ECA232G3467 Erigeron canadensis HOM05D006466 ORTHO05D008084 1.4e-15 86.7 51 80.4
Thhalv10026056m.g Eutrema salsugineum HOM05D006466 ORTHO05D008084 1.4e-15 86.7 50 82.0
Lj4g0024258 Lotus japonicus HOM05D006466 ORTHO05D008084 1.4e-15 86.7 51 80.4
Potri.001G123200 Populus trichocarpa HOM05D006466 ORTHO05D008084 1.4e-15 86.7 51 78.4
Sabra01G0094900 Salix brachista HOM05D006466 ORTHO05D008084 1.4e-15 86.7 51 78.4
SGA_v2.0_scaffold120G32877 Striga asiatica HOM05D006466 ORTHO05D008084 1.4e-15 86.7 50 84.0
Hma1.2p1_2380F.1_g320960 Hydrangea macrophylla HOM05D006466 ORTHO05D008084 1.8e-15 86.3 51 80.4
TAR375G0032 Trochodendron aralioides HOM05D006466 ORTHO05D008084 1.8e-15 86.3 51 80.4
Cc08_g12600 Coffea canephora HOM05D006466 ORTHO05D008084 2.3e-15 85.9 50 82.0
DCAR_008489 Daucus carota HOM05D005079 ORTHO05D006362 2.3e-15 85.9 50 82.0
Migut.A00968 Erythranthe guttata HOM05D006466 ORTHO05D008084 2.3e-15 85.9 51 78.4
Lsat_1_v5_gn_3_521 Lactuca sativa HOM05D006466 ORTHO05D008084 2.3e-15 85.9 51 78.4
Medtr4g101030 Medicago truncatula HOM05D006466 ORTHO05D008084 2.3e-15 85.9 50 82.0
SHI10480 Sapria himalayana HOM05D006466 ORTHO05D008084 2.3e-15 85.9 51 78.4
Manes.15G178400 Manihot esculenta HOM05D006466 ORTHO05D008084 3.0e-15 85.5 67 67.2
Oeu039628.1 Olea europaea HOM05D006466 ORTHO05D008084 3.0e-15 85.5 50 84.0
Solyc08g078740.1 Solanum lycopersicum HOM05D006466 ORTHO05D008084 4.0e-15 85.1 51 76.5
Sopen08g027210 Solanum pennellii HOM05D006466 ORTHO05D008084 4.0e-15 85.1 51 76.5
PGSC0003DMG401004755 Solanum tuberosum HOM05D006466 ORTHO05D008084 4.0e-15 85.1 51 76.5
FvH4_5g18710 Fragaria vesca HOM05D006466 ORTHO05D008084 5.2e-15 84.7 51 78.4
FAN04G2180 Fragaria x ananassa HOM05D006466 ORTHO05D008084 5.2e-15 84.7 51 78.4
FAN08G0853 Fragaria x ananassa HOM05D006466 ORTHO05D008084 5.2e-15 84.7 51 78.4
FAN18G0606 Fragaria x ananassa HOM05D006466 ORTHO05D008084 5.2e-15 84.7 51 78.4
RcHm_v2.0_Chr7g0203001 Rosa chinensis HOM05D006466 ORTHO05D008084 5.2e-15 84.7 51 78.4
AUR62007505 Chenopodium quinoa HOM05D006466 ORTHO05D008084 6.8e-15 84.3 51 74.5
AUR62039958 Chenopodium quinoa HOM05D006466 ORTHO05D008084 6.8e-15 84.3 51 74.5
Manes.15G178500 Manihot esculenta HOM05D006466 ORTHO05D008084 6.8e-15 84.3 67 67.2
BcaNung02868 Brassica carinata HOM05D006466 ORTHO05D008084 8.8e-15 84.0 50 78.0
Psat4g071640 Pisum sativum HOM05D006466 ORTHO05D008084 8.8e-15 84.0 50 80.0
Lalb_Chr16g0389331 Lupinus albus HOM05D006466 ORTHO05D008084 1.2e-14 83.6 51 76.5
SEGI_30297 Sequoiadendron giganteum HOM05D006466 ORTHO05D008084 1.5e-14 83.2 51 74.5
Peaxi162Scf00002g00172 Petunia axillaris HOM05D006466 ORTHO05D008084 2.0e-14 82.8 51 74.5
TPR.G37616 Trifolium pratense HOM05D006466 ORTHO05D008084 2.0e-14 82.8 50 76.0
Aa31LG2G12660 Aethionema arabicum HOM05D006466 ORTHO05D008084 3.4e-14 82.0 50 78.0
arahy.Tifrunner.gnm1.ann1.Y2DLV0 Arachis hypogaea HOM05D006466 ORTHO05D008084 3.4e-14 82.0 50 76.0
CARHR222950 Cardamine hirsuta HOM05D006466 ORTHO05D008084 3.4e-14 82.0 50 78.0
FAN13G1623 Fragaria x ananassa HOM05D006466 ORTHO05D008084 3.4e-14 82.0 51 76.5
Lj1A353T9 Lonicera japonica HOM05D006466 ORTHO05D008084 3.4e-14 82.0 49 81.6
SalBow6G4398 Salvia bowleyana HOM05D006466 ORTHO05D008084 3.4e-14 82.0 50 78.0
Sp7g15110 Schrenkiella parvula HOM05D006466 ORTHO05D008084 3.4e-14 82.0 50 78.0
BcaC06g33488 Brassica carinata HOM05D006466 ORTHO05D008084 4.4e-14 81.6 50 76.0
A03p49940 Brassica napus HOM05D006466 ORTHO05D008084 4.4e-14 81.6 50 76.0
C07p47980 Brassica napus HOM05D006466 ORTHO05D008084 4.4e-14 81.6 50 76.0
BolC7t45321H Brassica oleracea HOM05D006466 ORTHO05D008084 4.4e-14 81.6 50 76.0
BraA03t14087Z Brassica rapa HOM05D006466 ORTHO05D008084 4.4e-14 81.6 50 76.0
Carub.0007s2494 Capsella rubella HOM05D006466 ORTHO05D008084 5.7e-14 81.3 94 53.2
Oeu019590.1 Olea europaea HOM05D006466 ORTHO05D008084 5.7e-14 81.3 50 78.0
GSVIVG01030884001 Vitis vinifera HOM05D006466 ORTHO05D008084 7.5e-14 80.9 51 72.5
PSO170G1975 Papaver somniferum HOM05D006466 ORTHO05D008084 1.7e-13 79.7 51 74.5
PSO528G0015 Papaver somniferum HOM05D006466 ORTHO05D008084 1.7e-13 79.7 51 74.5
Mapoly0015s0012 Marchantia polymorpha HOM05D006466 ORTHO05D008084 6.3e-13 77.8 51 68.6
Zm00001eb044010 Zea mays HOM05D006466 ORTHO05D008084 1.1e-12 77.0 50 72.0
Pp3c3_19850 Physcomitrium patens HOM05D006466 ORTHO05D008084 1.4e-12 76.6 50 70.0
AL7G38350 Arabidopsis lyrata HOM05D006466 ORTHO05D008084 3.1e-12 75.5 50 72.0
AL7G38400 Arabidopsis lyrata HOM05D006466 ORTHO05D008084 3.1e-12 75.5 50 72.0
unitig_61.g26196 Utricularia gibba HOM05D006466 ORTHO05D008084 9.1e-12 73.9 50 72.0
AagrBONN_evm.TU.Sc2ySwM_228.639 Anthoceros agrestis HOM05D007188 ORTHO05D009102 1.2e-11 73.6 51 66.7
Os10g0507500 Oryza sativa ssp. japonica HOM05D006466 ORTHO05D008084 1.6e-11 73.2 50 66.0
Phvul.003G219800 Phaseolus vulgaris HOM05D006466 ORTHO05D008084 8.6e-10 67.4 51 64.7
arahy.Tifrunner.gnm1.ann1.MY6G43 Arachis hypogaea HOM05D006466 ORTHO05D008084 1.9e-09 66.2 36 80.6
VMungo0251G3296 Vigna mungo HOM05D006466 ORTHO05D008084 1.9e-09 66.2 51 64.7
arahy.Tifrunner.gnm1.ann1.HK6I2L Arachis hypogaea HOM05D006466 ORTHO05D008084 2.5e-09 65.9 51 62.7
arahy.Tifrunner.gnm1.ann1.LISY29 Arachis hypogaea HOM05D006466 ORTHO05D008084 2.5e-09 65.9 51 62.7
arahy.Tifrunner.gnm1.ann1.VT8LY8 Arachis hypogaea HOM05D006466 ORTHO05D008084 2.5e-09 65.9 51 62.7
Cpa.g.sc29.144 Carica papaya HOM05D006466 ORTHO05D008084 2.5e-09 65.9 51 64.7
AT4G16535 Arabidopsis thaliana HOM05D006466 ORTHO05D008084 5.5e-09 64.7 35 80.0
Glyma.17G140900 Glycine max HOM05D006466 ORTHO05D008084 1.6e-08 63.2 35 77.1
Ca_21959_v3 Cicer arietinum L. HOM05D006466 ORTHO05D008084 3.6e-08 62.0 51 58.8
Cre06.g300200 Chlamydomonas reinhardtii HOM05D006466 ORTHO05D008084 7.5e-06 54.3 33 75.8


User provided reference genes

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