Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.L01514 Eucalyptus grandis HOM05D008023 ORTHO05D010897 1.4e-50 202.6 101 100.0
Eucgr.F01214 Eucalyptus grandis HOM05D008023 ORTHO05D010897 5.5e-50 200.7 101 99.0
PGR083G0067 Punica granatum HOM05D008023 ORTHO05D010897 1.1e-13 80.1 104 46.2
Ciclev10008068m.g Citrus clementina HOM05D008023 ORTHO05D002944 4.1e-13 78.2 99 38.4
QL08p026875 Quercus lobata HOM05D008023 ORTHO05D002944 5.3e-13 77.8 98 42.9
Atru.chr2.2242 Acer truncatum HOM05D008023 ORTHO05D002944 7.0e-13 77.4 98 42.9
Lj3g0002978 Lotus japonicus HOM05D008023 ORTHO05D002944 7.0e-13 77.4 101 43.6
Lalb_Chr19g0133891 Lupinus albus HOM05D008023 ORTHO05D002944 7.0e-13 77.4 62 54.8
Manes.15G092100 Manihot esculenta HOM05D008023 ORTHO05D002944 9.1e-13 77.0 100 45.0
Glyma.06G231200 Glycine max HOM05D008023 ORTHO05D002944 1.2e-12 76.6 102 43.1
VMungo1127G0722 Vigna mungo HOM05D008023 ORTHO05D002944 1.6e-12 76.3 104 41.3
vmacro09501 Vaccinium macrocarpon HOM05D008023 ORTHO05D002944 2.0e-12 75.9 101 47.5
Dinv14970 Davidia involucrata HOM05D008023 ORTHO05D002944 3.5e-12 75.1 99 42.4
Psat4g175400 Pisum sativum HOM05D008023 ORTHO05D002944 5.9e-12 74.3 101 41.6
Cfa019590 Carpinus fangiana HOM05D008023 ORTHO05D002944 1.3e-11 73.2 99 38.4
TPR.G12029 Trifolium pratense HOM05D008023 ORTHO05D002944 1.7e-11 72.8 101 39.6
Actinidia18792 Actinidia chinensis HOM05D008023 ORTHO05D002944 2.2e-11 72.4 99 44.4
Actinidia35220 Actinidia chinensis HOM05D008023 ORTHO05D002944 2.2e-11 72.4 99 43.4
Potri.001G376800 Populus trichocarpa HOM05D008023 ORTHO05D002944 2.2e-11 72.4 99 42.4
Cc05_g11360 Coffea canephora HOM05D008023 ORTHO05D002944 2.9e-11 72.0 100 44.0
Duzib170G0431 Durio zibethinus HOM05D008023 ORTHO05D002944 2.9e-11 72.0 99 38.4
Gohir.D11G306100 Gossypium hirsutum HOM05D008023 ORTHO05D002944 3.8e-11 71.6 100 41.0
CSS0035750 Camellia sinensis var. sinensis HOM05D008023 ORTHO05D002944 5.0e-11 71.2 99 43.4
Prupe.4G170200 Prunus persica HOM05D008023 ORTHO05D002944 5.0e-11 71.2 99 40.4
CANSAT35G0556 Cannabis sativa HOM05D008023 ORTHO05D010897 6.5e-11 70.9 100 42.0
Lj1A833T49 Lonicera japonica HOM05D008023 ORTHO05D002944 8.5e-11 70.5 100 41.0
Duzib213G0674 Durio zibethinus HOM05D008023 ORTHO05D002944 1.1e-10 70.1 99 37.4
RcHm_v2.0_Chr5g0031461 Rosa chinensis HOM05D008023 ORTHO05D002944 1.5e-10 69.7 99 40.4
Thecc.07G105200 Theobroma cacao HOM05D008023 ORTHO05D002944 1.5e-10 69.7 100 41.0
GSVIVG01014227001 Vitis vinifera HOM05D008023 ORTHO05D002944 1.5e-10 69.7 93 36.6
Rhsim04G0024700 Rhododendron simsii HOM05D008023 ORTHO05D002944 1.9e-10 69.3 99 45.5
TAR629G2655 Trochodendron aralioides HOM05D004563 ORTHO05D002944 1.9e-10 69.3 103 45.6
Sabra16G0248200 Salix brachista HOM05D008023 ORTHO05D002944 3.2e-10 68.6 114 40.4
ClCG11G017550 Citrullus lanatus HOM05D008023 ORTHO05D002944 4.2e-10 68.2 95 37.9
CiPaw.12G114700 Carya illinoinensis HOM05D008023 ORTHO05D002944 5.5e-10 67.8 99 40.4
TWI39G0037 Tripterygium wilfordii HOM05D008023 ORTHO05D002944 7.2e-10 67.4 94 40.4
Cc01_g02410 Coffea canephora HOM05D008023 ORTHO05D002944 9.4e-10 67.0 100 43.0
MELO3C025631.2 Cucumis melo HOM05D008023 ORTHO05D002944 1.2e-09 66.6 91 39.6
Manes.03G103000 Manihot esculenta HOM05D008023 ORTHO05D002944 1.6e-09 66.2 99 38.4
CsaV3_4G033230 Cucumis sativus L. HOM05D008023 ORTHO05D010897 2.7e-09 65.5 90 41.1
Cpa.g.sc131.62 Carica papaya HOM05D008023 ORTHO05D002944 3.6e-09 65.1 101 40.6
Lj8C151T6 Lonicera japonica HOM05D008023 ORTHO05D010897 3.6e-09 65.1 93 43.0
Medtr8g463800 Medicago truncatula HOM05D008023 ORTHO05D002944 3.6e-09 65.1 99 37.4
Gohir.D05G344300 Gossypium hirsutum HOM05D008023 ORTHO05D002944 6.1e-09 64.3 101 38.6
Gorai.009G372300 Gossypium raimondii HOM05D008023 ORTHO05D002944 6.1e-09 64.3 101 38.6
TAR626G0818 Trochodendron aralioides HOM05D008023 ORTHO05D002944 6.1e-09 64.3 101 39.6
FAN25G1709 Fragaria x ananassa HOM05D008023 ORTHO05D002944 1.0e-08 63.5 100 39.0
FvH4_3g18640 Fragaria vesca HOM05D008023 ORTHO05D002944 1.4e-08 63.2 100 38.0
FAN11G0626 Fragaria x ananassa HOM05D008023 ORTHO05D002944 1.4e-08 63.2 100 38.0
FAN21G3564 Fragaria x ananassa HOM05D008023 ORTHO05D002944 3.0e-08 62.0 100 38.0
MD03G1240400 Malus domestica HOM05D008023 ORTHO05D002944 4.0e-08 61.6 90 41.1
Gohir.A11G287000 Gossypium hirsutum HOM05D008023 ORTHO05D002944 5.2e-08 61.2 87 39.1
AT1G73130 Arabidopsis thaliana HOM05D009038 ORTHO05D010897 6.7e-08 60.8 93 37.6
Gohir.A04G038800 Gossypium hirsutum HOM05D008023 ORTHO05D002944 6.7e-08 60.8 101 36.6
Sp1g15860 Schrenkiella parvula HOM05D009038 ORTHO05D010897 1.1e-07 60.1 91 39.6
Carub.0001s1751 Capsella rubella HOM05D009038 ORTHO05D010897 1.5e-07 59.7 91 41.8
Thhalv10018751m.g Eutrema salsugineum HOM05D009038 ORTHO05D010897 1.5e-07 59.7 98 38.8
FvH4_3g25880 Fragaria vesca HOM05D008023 ORTHO05D010897 1.5e-07 59.7 62 43.5
FAN16G2995 Fragaria x ananassa HOM05D008023 ORTHO05D002944 1.5e-07 59.7 100 37.0
MD11G1259700 Malus domestica HOM05D008023 ORTHO05D002944 1.5e-07 59.7 90 40.0
Sp5g28090 Schrenkiella parvula HOM05D009038 ORTHO05D010897 1.5e-07 59.7 93 39.8
AT2G16575 Arabidopsis thaliana HOM05D009038 ORTHO05D010897 2.0e-07 59.3 87 40.2
CARHR018390 Cardamine hirsuta HOM05D009038 ORTHO05D010897 2.0e-07 59.3 87 41.4
Hma1.2p1_0178F.1_g078980 Hydrangea macrophylla HOM05D004563 ORTHO05D002944 2.0e-07 59.3 98 35.7
Phvul.011G159200 Phaseolus vulgaris HOM05D008023 ORTHO05D002944 2.0e-07 59.3 114 32.5
THA.LOC104812203 Tarenaya hassleriana HOM05D009038 ORTHO05D010897 2.0e-07 59.3 93 38.7
THA.LOC104823260 Tarenaya hassleriana HOM05D009038 ORTHO05D010897 2.0e-07 59.3 83 43.4
A02p18460 Brassica napus HOM05D009038 ORTHO05D010897 2.6e-07 58.9 90 43.3
BraA02t06885Z Brassica rapa HOM05D009038 ORTHO05D010897 2.6e-07 58.9 90 43.3
Ca_23071_v3 Cicer arietinum L. HOM05D008023 ORTHO05D002944 3.3e-07 58.5 90 36.7
AL1G30140 Arabidopsis lyrata HOM05D009038 ORTHO05D010897 4.4e-07 58.2 91 40.7
Nitab4.5_0006539g0020 Nicotiana tabacum HOM05D018586 ORTHO05D002944 5.7e-07 57.8 100 34.0
DCAR_013145 Daucus carota HOM05D008023 ORTHO05D002944 7.5e-07 57.4 99 38.4
C02p30590 Brassica napus HOM05D009038 ORTHO05D010897 9.7e-07 57.0 89 40.4
BolC2t09109H Brassica oleracea HOM05D009038 ORTHO05D010897 9.7e-07 57.0 89 40.4
PGSC0003DMG400012394 Solanum tuberosum HOM05D018586 ORTHO05D002944 9.7e-07 57.0 97 34.0
Aa31LG4G3400 Aethionema arabicum HOM05D009038 ORTHO05D010897 1.3e-06 56.6 91 38.5
MD17G1232800 Malus domestica HOM05D004563 ORTHO05D002944 1.3e-06 56.6 105 34.3
Solyc07g062640.3 Solanum lycopersicum HOM05D018586 ORTHO05D002944 1.7e-06 56.2 97 34.0
Sopen07g030870 Solanum pennellii HOM05D018586 ORTHO05D002944 1.7e-06 56.2 97 34.0
Aa31LG7G2600 Aethionema arabicum HOM05D009038 ORTHO05D010897 2.8e-06 55.5 87 36.8
AT1G17780 Arabidopsis thaliana HOM05D009038 ORTHO05D010897 2.8e-06 55.5 87 37.9
BraA08t35004Z Brassica rapa HOM05D009038 ORTHO05D010897 2.8e-06 55.5 87 37.9
A08p30740 Brassica napus HOM05D009038 ORTHO05D010897 3.7e-06 55.1 88 38.6
Aqoxy1G03185 Aquilegia oxysepala HOM05D004563 ORTHO05D002944 6.3e-06 54.3 70 45.7
BcaC07g38888 Brassica carinata HOM05D009038 ORTHO05D010897 6.3e-06 54.3 88 39.8
C08p18180 Brassica napus HOM05D009038 ORTHO05D010897 6.3e-06 54.3 88 39.8
BolC8t49453H Brassica oleracea HOM05D009038 ORTHO05D010897 6.3e-06 54.3 88 39.8
CARHR066100 Cardamine hirsuta HOM05D009038 ORTHO05D010897 6.3e-06 54.3 88 35.2
Eucgr.A01904 Eucalyptus grandis HOM05D004563 ORTHO05D002944 6.3e-06 54.3 101 30.7
Lsat_1_v5_gn_9_99560 Lactuca sativa HOM05D029722 ORTHO05D002944 8.2e-06 53.9 97 32.0
Manes.13G138000 Manihot esculenta HOM05D004563 ORTHO05D002944 8.2e-06 53.9 98 34.7
Nitab4.5_0000246g0140 Nicotiana tabacum HOM05D018586 ORTHO05D002944 8.2e-06 53.9 94 34.0
Solyc07g053320.4 Solanum lycopersicum HOM05D004563 ORTHO05D002944 8.2e-06 53.9 102 34.3


User provided reference genes

Program Settings