Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.L01367 Eucalyptus grandis HOM05D007383 ORTHO05D009254 1.1e-45 187.6 223 100.0
Eucgr.B00333 Eucalyptus grandis HOM05D007383 ORTHO05D009254 2.1e-38 163.3 81 97.5
PGR083G0796 Punica granatum HOM05D007383 ORTHO05D009254 6.0e-33 145.2 81 86.4
FvH4_5g16320 Fragaria vesca HOM05D007383 ORTHO05D009254 7.3e-31 138.3 81 81.5
FAN04G2952 Fragaria x ananassa HOM05D007383 ORTHO05D009254 7.3e-31 138.3 81 81.5
FAN13G1668 Fragaria x ananassa HOM05D007383 ORTHO05D009254 7.3e-31 138.3 81 81.5
FAN18G1044 Fragaria x ananassa HOM05D007383 ORTHO05D009254 7.3e-31 138.3 81 81.5
FAN08G2883 Fragaria x ananassa HOM05D007383 ORTHO05D009254 2.1e-30 136.7 81 80.2
MD14G1187700 Malus domestica HOM05D007383 ORTHO05D009254 2.1e-30 136.7 81 82.7
CiPaw.11G032700 Carya illinoinensis HOM05D007383 ORTHO05D009254 2.8e-30 136.3 81 82.7
QL02p081072 Quercus lobata HOM05D007383 ORTHO05D009254 3.6e-30 136.0 81 82.7
QL10p027823 Quercus lobata HOM05D007383 ORTHO05D009254 3.6e-30 136.0 81 82.7
RcHm_v2.0_Chr7g0179811 Rosa chinensis HOM05D007383 ORTHO05D009254 4.8e-30 135.6 81 80.2
Prupe.5G180100 Prunus persica HOM05D007383 ORTHO05D009254 6.2e-30 135.2 81 80.2
ClCG01G014130 Citrullus lanatus HOM05D002622 ORTHO05D002837 1.4e-29 134.0 79 82.3
GSVIVG01007832001 Vitis vinifera HOM05D002622 ORTHO05D002837 1.4e-29 134.0 78 79.5
MD06G1181800 Malus domestica HOM05D007383 ORTHO05D009254 2.4e-29 133.3 81 82.7
Cfa019063 Carpinus fangiana HOM05D007383 ORTHO05D009254 4.0e-29 132.5 81 80.2
Haze_07432 Corylus avellana HOM05D007383 ORTHO05D009254 4.0e-29 132.5 81 80.2
CsaV3_1G008180 Cucumis sativus L. HOM05D007383 ORTHO05D009254 4.0e-29 132.5 81 80.2
Manes.14G070900 Manihot esculenta HOM05D007383 ORTHO05D009254 5.3e-29 132.1 81 82.7
Potri.015G070200 Populus trichocarpa HOM05D007383 ORTHO05D009254 5.3e-29 132.1 81 80.2
COL.COLO4_21446 Corchorus olitorius HOM05D007383 ORTHO05D009254 9.0e-29 131.3 81 80.2
TWI15G0484 Tripterygium wilfordii HOM05D007383 ORTHO05D009254 1.5e-28 130.6 81 76.5
SGA_v2.0_scaffold196G40934 Striga asiatica HOM05D007383 ORTHO05D009254 2.6e-28 129.8 81 75.3
MELO3C002235.2 Cucumis melo HOM05D007383 ORTHO05D009254 3.4e-28 129.4 81 77.8
Sed0012253 Sechium edule HOM05D007383 ORTHO05D009254 4.5e-28 129.0 81 76.5
Ciclev10019863m.g Citrus clementina HOM05D007383 ORTHO05D009254 7.6e-28 128.3 81 77.8
Migut.G00440 Erythranthe guttata HOM05D007383 ORTHO05D009254 7.6e-28 128.3 81 75.3
CARHR068220 Cardamine hirsuta HOM05D007383 ORTHO05D009254 1.3e-27 127.5 81 76.5
Thecc.03G003000 Theobroma cacao HOM05D007383 ORTHO05D009254 1.3e-27 127.5 81 76.5
Lj1g0016404 Lotus japonicus HOM05D007383 ORTHO05D009254 2.2e-27 126.7 81 74.1
Sabra15G0094300 Salix brachista HOM05D007383 ORTHO05D009254 2.2e-27 126.7 81 79.0
Sabra15G0094600 Salix brachista HOM05D007383 ORTHO05D009254 2.2e-27 126.7 81 79.0
Dinv20703 Davidia involucrata HOM05D007383 ORTHO05D009254 2.9e-27 126.3 81 76.5
Duzib084G1098 Durio zibethinus HOM05D007383 ORTHO05D009254 2.9e-27 126.3 81 76.5
Ca_16213_v3 Cicer arietinum L. HOM05D007383 ORTHO05D009254 4.9e-27 125.6 81 74.1
Gohir.A06G179600 Gossypium hirsutum HOM05D007383 ORTHO05D009254 6.4e-27 125.2 81 75.3
Gorai.010G218900 Gossypium raimondii HOM05D007383 ORTHO05D009254 6.4e-27 125.2 81 75.3
Lsat_1_v5_gn_1_11261 Lactuca sativa HOM05D007383 ORTHO05D009254 6.4e-27 125.2 81 74.1
Lalb_Chr08g0236281 Lupinus albus HOM05D007383 ORTHO05D009254 6.4e-27 125.2 81 76.5
VMungo1127G1483 Vigna mungo HOM05D007383 ORTHO05D009254 6.4e-27 125.2 81 74.1
CSS0003541 Camellia sinensis var. sinensis HOM05D007383 ORTHO05D009254 8.4e-27 124.8 81 74.1
CSS0038327 Camellia sinensis var. sinensis HOM05D007383 ORTHO05D009254 8.4e-27 124.8 81 74.1
Medtr3g078580 Medicago truncatula HOM05D007383 ORTHO05D009254 8.4e-27 124.8 81 74.1
Nn3g16997 Nelumbo nucifera HOM05D007383 ORTHO05D009254 8.4e-27 124.8 81 75.3
Actinidia04954 Actinidia chinensis HOM05D007383 ORTHO05D009254 1.1e-26 124.4 81 72.8
AL2G34780 Arabidopsis lyrata HOM05D007383 ORTHO05D009254 1.4e-26 124.0 81 72.8
AT1G74900 Arabidopsis thaliana HOM05D007383 ORTHO05D009254 1.9e-26 123.6 81 72.8
Thhalv10018527m.g Eutrema salsugineum HOM05D007383 ORTHO05D009254 1.9e-26 123.6 81 72.8
Lj5P120T29 Lonicera japonica HOM05D007383 ORTHO05D009254 1.9e-26 123.6 81 72.8
Oeu022178.1 Olea europaea HOM05D007383 ORTHO05D009254 1.9e-26 123.6 81 74.1
THA.LOC104803714 Tarenaya hassleriana HOM05D007383 ORTHO05D009254 1.9e-26 123.6 81 74.1
CANSAT64G1989 Cannabis sativa HOM05D007383 ORTHO05D009254 4.2e-26 122.5 81 75.3
SHI16834 Sapria himalayana HOM05D007383 ORTHO05D009254 5.4e-26 122.1 81 72.8
arahy.Tifrunner.gnm1.ann1.W479H1 Arachis hypogaea HOM05D007383 ORTHO05D009254 7.1e-26 121.7 81 74.1
Carub.0002s2169 Capsella rubella HOM05D007383 ORTHO05D009254 7.1e-26 121.7 81 71.6
Aa31LG4G5110 Aethionema arabicum HOM05D007383 ORTHO05D009254 1.2e-25 120.9 79 72.2
Aqoxy3G03101 Aquilegia oxysepala HOM05D007383 ORTHO05D009254 1.2e-25 120.9 81 74.1
PSO591G0482 Papaver somniferum HOM05D007383 ORTHO05D009254 1.2e-25 120.9 81 70.4
Sp5g30040 Schrenkiella parvula HOM05D007383 ORTHO05D009254 1.2e-25 120.9 79 73.4
MSTRG.21190 Avicennia marina HOM05D007383 ORTHO05D009254 1.6e-25 120.6 79 72.2
Nitab4.5_0005005g0030 Nicotiana tabacum HOM05D007383 ORTHO05D009254 1.6e-25 120.6 81 71.6
Solyc03g113750.3 Solanum lycopersicum HOM05D007383 ORTHO05D009254 1.6e-25 120.6 81 72.8
Sopen03g032800 Solanum pennellii HOM05D007383 ORTHO05D009254 1.6e-25 120.6 81 72.8
TAR629G0990 Trochodendron aralioides HOM05D007383 ORTHO05D009254 1.6e-25 120.6 81 71.6
BcaNung06480 Brassica carinata HOM05D007383 ORTHO05D009254 2.1e-25 120.2 81 70.4
ECA247G2801 Erigeron canadensis HOM05D007383 ORTHO05D009254 2.1e-25 120.2 81 70.4
PSO832G2588 Papaver somniferum HOM05D007383 ORTHO05D009254 2.1e-25 120.2 81 70.4
Psat5g113680 Pisum sativum HOM05D007383 ORTHO05D009254 2.1e-25 120.2 81 69.1
CAN.G853.23 Capsicum annuum HOM05D007383 ORTHO05D009254 2.7e-25 119.8 81 70.4
Rhsim08G0167400 Rhododendron simsii HOM05D007383 ORTHO05D009254 2.7e-25 119.8 81 70.4
HanXRQChr02g0043781 Helianthus annuus HOM05D007383 ORTHO05D009254 3.5e-25 119.4 81 70.4
HanXRQChr14g0455831 Helianthus annuus HOM05D007383 ORTHO05D009254 3.5e-25 119.4 81 70.4
PGSC0003DMG401024469 Solanum tuberosum HOM05D007383 ORTHO05D009254 3.5e-25 119.4 81 71.6
AUR62027012 Chenopodium quinoa HOM05D007383 ORTHO05D009254 4.6e-25 119.0 81 70.4
AUR62030852 Chenopodium quinoa HOM05D007383 ORTHO05D009254 4.6e-25 119.0 81 70.4
arahy.Tifrunner.gnm1.ann1.91G2CV Arachis hypogaea HOM05D007383 ORTHO05D009254 6.0e-25 118.6 81 72.8
arahy.Tifrunner.gnm1.ann1.Y1RBXN Arachis hypogaea HOM05D007383 ORTHO05D009254 7.9e-25 118.2 81 71.6
BcaC08g46924 Brassica carinata HOM05D007383 ORTHO05D009254 1.0e-24 117.9 78 71.8
A07p40530 Brassica napus HOM05D007383 ORTHO05D009254 1.0e-24 117.9 78 71.8
C06p48920 Brassica napus HOM05D007383 ORTHO05D009254 1.0e-24 117.9 78 71.8
BolC6t39928H Brassica oleracea HOM05D007383 ORTHO05D009254 1.0e-24 117.9 78 71.8
Peaxi162Scf00017g00227 Petunia axillaris HOM05D007383 ORTHO05D009254 1.3e-24 117.5 81 67.9
BraA07t31598Z Brassica rapa HOM05D007383 ORTHO05D009254 1.1e-23 114.4 78 70.5
DCAR_016510 Daucus carota HOM05D007383 ORTHO05D009254 1.9e-23 113.6 81 67.9
Phvul.011G090300 Phaseolus vulgaris HOM05D007383 ORTHO05D009254 1.9e-23 113.6 79 68.4
Cc04_g15920 Coffea canephora HOM05D007383 ORTHO05D009254 5.6e-23 112.1 81 65.4
Ah.01g024620 Amaranthus hybridus HOM05D007383 ORTHO05D009254 7.4e-23 111.7 81 65.4
Glyma.12G085400 Glycine max HOM05D007383 ORTHO05D009254 2.1e-22 110.2 81 69.1
Glyma.11G189200 Glycine max HOM05D007383 ORTHO05D009254 6.2e-22 108.6 81 66.7
vmacro14147 Vaccinium macrocarpon HOM05D007383 ORTHO05D009254 8.1e-22 108.2 79 68.4
Sc04g0002110 Simmondsia chinensis HOM05D007383 ORTHO05D009254 3.1e-21 106.3 72 70.8
arahy.Tifrunner.gnm1.ann1.QUI6I3 Arachis hypogaea HOM05D007383 ORTHO05D009254 6.9e-21 105.1 66 74.2
MBI03_g18671_MAGBIO Magnolia biondii HOM05D007383 ORTHO05D009254 6.9e-21 105.1 81 60.5
TPR.G6852 Trifolium pratense HOM05D007383 ORTHO05D009254 7.6e-20 101.7 63 73.0
CDE10G1349 Ceratophyllum demersum HOM05D007383 ORTHO05D009254 1.7e-19 100.5 81 58.0
HPP92_007727 Vanilla planifolia HOM05D007383 ORTHO05D009254 3.2e-18 96.3 83 59.0
Atru.chr9.2397 Acer truncatum HOM05D007383 ORTHO05D009254 2.3e-16 90.1 57 77.2
ATR0564G068 Amborella trichopoda HOM05D000424 ORTHO05D009254 5.1e-16 89.0 76 59.2
Cc06_g20550 Coffea canephora HOM05D007383 ORTHO05D009254 8.7e-08 61.6 46 58.7
SEGI_30418 Sequoiadendron giganteum HOM05D000424 ORTHO05D009254 1.9e-07 60.5 71 45.1
Eucgr.B00331 Eucalyptus grandis HOM05D025815 ORTHO05D018419 2.5e-07 60.1 81 46.9
Os02g0679200 Oryza sativa ssp. japonica HOM05D007383 ORTHO05D009254 9.6e-07 58.2 79 44.3
Zm00001eb250630 Zea mays HOM05D007383 ORTHO05D009254 1.6e-06 57.4 75 41.3
Eucgr.G02199 Eucalyptus grandis HOM05D000424 ORTHO05D000355 4.8e-06 55.8 69 40.6


User provided reference genes

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