Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.L01354 Eucalyptus grandis HOM05D005695 ORTHO05D007810 2.6e-56 221.9 113 100.0
Eucgr.D01073 Eucalyptus grandis HOM05D005695 ORTHO05D007810 1.1e-38 163.3 98 84.7
Prupe.2G106600 Prunus persica HOM05D005695 ORTHO05D007810 3.2e-14 82.0 68 66.2
ClCG05G002480 Citrullus lanatus HOM05D005695 ORTHO05D007810 1.3e-12 76.6 92 48.9
Cfa003697 Carpinus fangiana HOM05D005695 ORTHO05D007810 2.3e-12 75.9 42 85.7
Haze_15789 Corylus avellana HOM05D005695 ORTHO05D007810 2.3e-12 75.9 42 85.7
RcHm_v2.0_Chr1g0340701 Rosa chinensis HOM05D005695 ORTHO05D007810 2.3e-12 75.9 45 80.0
arahy.Tifrunner.gnm1.ann1.9M82AQ Arachis hypogaea HOM05D005695 ORTHO05D007810 5.0e-12 74.7 85 50.6
CiPaw.02G047100 Carya illinoinensis HOM05D005695 ORTHO05D007810 5.0e-12 74.7 45 73.3
Gohir.A11G224224 Gossypium hirsutum HOM05D005695 ORTHO05D007810 6.6e-12 74.3 58 65.5
Gorai.007G250100 Gossypium raimondii HOM05D005695 ORTHO05D007810 6.6e-12 74.3 58 65.5
Rhsim03G0068300 Rhododendron simsii HOM05D005695 ORTHO05D007810 6.6e-12 74.3 56 64.3
Manes.09G133400 Manihot esculenta HOM05D005695 ORTHO05D007810 8.6e-12 73.9 79 53.2
Sc23g0004120 Simmondsia chinensis HOM05D005695 ORTHO05D007810 8.6e-12 73.9 42 81.0
CsaV3_3G009910 Cucumis sativus L. HOM05D005695 ORTHO05D007810 1.1e-11 73.6 58 65.5
FvH4_7g08330 Fragaria vesca HOM05D005695 ORTHO05D007810 1.1e-11 73.6 45 75.6
FAN06G4316 Fragaria x ananassa HOM05D005695 ORTHO05D007810 1.1e-11 73.6 45 75.6
FAN10G2937 Fragaria x ananassa HOM05D005695 ORTHO05D007810 1.1e-11 73.6 45 75.6
Potri.013G070800 Populus trichocarpa HOM05D005695 ORTHO05D007810 1.1e-11 73.6 46 78.3
arahy.Tifrunner.gnm1.ann1.HX5TFH Arachis hypogaea HOM05D005695 ORTHO05D007810 1.5e-11 73.2 87 48.3
Duzib177G0357 Durio zibethinus HOM05D005695 ORTHO05D007810 1.5e-11 73.2 42 83.3
FAN03G1677 Fragaria x ananassa HOM05D005695 ORTHO05D007810 1.9e-11 72.8 45 75.6
COL.COLO4_21416 Corchorus olitorius HOM05D005695 ORTHO05D007810 3.3e-11 72.0 43 79.1
Sabra13G0061700 Salix brachista HOM05D005695 ORTHO05D007810 5.6e-11 71.2 46 73.9
Thecc.05G234400 Theobroma cacao HOM05D005695 ORTHO05D007810 5.6e-11 71.2 58 63.8
FAN01G0968 Fragaria x ananassa HOM05D005695 ORTHO05D007810 9.5e-11 70.5 45 73.3
Hma1.2p1_0128F.1_g060070 Hydrangea macrophylla HOM05D005695 ORTHO05D007810 9.5e-11 70.5 47 68.1
Hma1.2p1_0128F.1_g060080 Hydrangea macrophylla HOM05D005695 ORTHO05D007810 9.5e-11 70.5 47 68.1
BcaB08g36754 Brassica carinata HOM05D005695 ORTHO05D007810 1.6e-10 69.7 87 49.4
Atru.chr2.1635 Acer truncatum HOM05D005695 ORTHO05D007810 3.6e-10 68.6 45 77.8
Ah.14g078600 Amaranthus hybridus HOM05D005695 ORTHO05D007810 3.6e-10 68.6 51 62.7
AT5G17660 Arabidopsis thaliana HOM05D005695 ORTHO05D007810 3.6e-10 68.6 41 78.0
BcaC04g18770 Brassica carinata HOM05D005695 ORTHO05D007810 3.6e-10 68.6 41 78.0
BolC9t58788H Brassica oleracea HOM05D005695 ORTHO05D007810 3.6e-10 68.6 41 78.0
Sed0004515 Sechium edule HOM05D005695 ORTHO05D007810 3.6e-10 68.6 101 46.5
TWI60G1156 Tripterygium wilfordii HOM05D005695 ORTHO05D007810 3.6e-10 68.6 40 82.5
Thhalv10014195m.g Eutrema salsugineum HOM05D005695 ORTHO05D007810 4.7e-10 68.2 41 78.0
Lsat_1_v5_gn_7_33441 Lactuca sativa HOM05D005695 ORTHO05D007810 8.1e-10 67.4 68 50.0
Aa31LG11G11970 Aethionema arabicum HOM05D005695 ORTHO05D007810 1.1e-09 67.0 41 75.6
AL6G28750 Arabidopsis lyrata HOM05D005695 ORTHO05D007810 1.1e-09 67.0 41 75.6
A10p21740 Brassica napus HOM05D005695 ORTHO05D007810 1.1e-09 67.0 41 75.6
Cpa.g.sc73.26 Carica papaya HOM05D005695 ORTHO05D007810 1.1e-09 67.0 42 76.2
THA.LOC104820817 Tarenaya hassleriana HOM05D005695 ORTHO05D007810 1.1e-09 67.0 42 76.2
Actinidia21589 Actinidia chinensis HOM05D005695 ORTHO05D007810 1.4e-09 66.6 57 59.6
BraA10t44235Z Brassica rapa HOM05D005695 ORTHO05D007810 1.4e-09 66.6 41 75.6
HanXRQChr04g0117691 Helianthus annuus HOM05D005695 ORTHO05D007810 1.4e-09 66.6 69 52.2
Hma1.2p1_0353F.1_g133140 Hydrangea macrophylla HOM05D005695 ORTHO05D007810 1.8e-09 66.2 47 66.0
Glyma.03G100600 Glycine max HOM05D005695 ORTHO05D007810 2.3e-09 65.9 62 61.3
vmacro21118 Vaccinium macrocarpon HOM05D005695 ORTHO05D007810 2.3e-09 65.9 92 44.6
Cc05_g03930 Coffea canephora HOM05D005695 ORTHO05D007810 3.1e-09 65.5 62 54.8
DCAR_015741 Daucus carota HOM05D005695 ORTHO05D007810 3.1e-09 65.5 44 70.5
ECA236G4408 Erigeron canadensis HOM05D005695 ORTHO05D007810 3.1e-09 65.5 45 66.7
Sp6g26560 Schrenkiella parvula HOM05D005695 ORTHO05D007810 4.0e-09 65.1 40 75.0
Carub.0006s1590 Capsella rubella HOM05D005695 ORTHO05D007810 5.2e-09 64.7 41 73.2
Dinv43962 Davidia involucrata HOM05D005695 ORTHO05D007810 5.2e-09 64.7 42 69.0
Glyma.07G122300 Glycine max HOM05D005695 ORTHO05D007810 5.2e-09 64.7 61 59.0
Oeu060724.1 Olea europaea HOM05D005695 ORTHO05D007810 5.2e-09 64.7 98 40.8
Oeu060726.1 Olea europaea HOM05D005695 ORTHO05D007810 5.2e-09 64.7 98 40.8
Migut.N01667 Erythranthe guttata HOM05D005695 ORTHO05D007810 1.5e-08 63.2 91 41.8
CANSAT54G1451 Cannabis sativa HOM05D005695 ORTHO05D007810 2.0e-08 62.8 56 62.5
CARHR195520 Cardamine hirsuta HOM05D005695 ORTHO05D007810 2.0e-08 62.8 41 75.6
Ciclev10032172m.g Citrus clementina HOM05D005695 ORTHO05D007810 2.0e-08 62.8 63 52.4
SGA_v2.0_scaffold4G02228 Striga asiatica HOM05D005695 ORTHO05D007810 2.0e-08 62.8 44 65.9
Medtr8g009680 Medicago truncatula HOM05D005695 ORTHO05D007810 4.4e-08 61.6 97 44.3
GSVIVG01019305001 Vitis vinifera HOM05D005695 ORTHO05D007810 4.4e-08 61.6 98 41.8
Psat4g216440 Pisum sativum HOM05D005695 ORTHO05D007810 5.8e-08 61.2 89 44.9
Lalb_Chr07g0194921 Lupinus albus HOM05D005695 ORTHO05D007810 7.5e-08 60.8 72 47.2
Nn7g37385 Nelumbo nucifera HOM05D005695 ORTHO05D007810 7.5e-08 60.8 46 65.2
TAR715G0002 Trochodendron aralioides HOM05D005695 ORTHO05D007810 7.5e-08 60.8 42 69.0
Aqoxy3G02210 Aquilegia oxysepala HOM05D005695 ORTHO05D007810 3.7e-07 58.5 82 42.7
ATR0568G060 Amborella trichopoda HOM05D005695 ORTHO05D007810 4.9e-07 58.2 45 66.7
Lj3g0016519 Lotus japonicus HOM05D005695 ORTHO05D007810 6.4e-07 57.8 42 71.4
VMungo0331G0599 Vigna mungo HOM05D005695 ORTHO05D007810 6.4e-07 57.8 84 44.0
MELO3C006212.2 Cucumis melo HOM05D005695 ORTHO05D007810 1.1e-06 57.0 49 59.2
Phvul.010G040100 Phaseolus vulgaris HOM05D005695 ORTHO05D007810 3.2e-06 55.5 96 39.6
MSTRG.4989 Avicennia marina HOM05D005695 ORTHO05D007810 4.1e-06 55.1 44 59.1
MD02G1232000 Malus domestica HOM05D005695 ORTHO05D007810 4.1e-06 55.1 45 64.4
Solyc01g081460.3 Solanum lycopersicum HOM05D005695 ORTHO05D007810 4.1e-06 55.1 98 38.8
PGSC0003DMG400031121 Solanum tuberosum HOM05D005695 ORTHO05D007810 4.1e-06 55.1 52 48.1
unitig_22.g5902 Utricularia gibba HOM05D005695 ORTHO05D007810 4.1e-06 55.1 75 34.7
C09p59500 Brassica napus HOM05D005695 ORTHO05D007810 5.4e-06 54.7 66 48.5
Sopen01g033020 Solanum pennellii HOM05D005695 ORTHO05D007810 5.4e-06 54.7 98 38.8
CDE11G0447 Ceratophyllum demersum HOM05D005695 ORTHO05D007810 7.1e-06 54.3 45 57.8
AUR62038021 Chenopodium quinoa HOM05D005695 ORTHO05D007810 7.1e-06 54.3 42 61.9


User provided reference genes

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