Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.L01337 Eucalyptus grandis HOM05D005223 ORTHO05D006449 0.0e+00 1988.4 1021 100.0
Eucgr.B00148 Eucalyptus grandis HOM05D005223 ORTHO05D006449 0.0e+00 1542.7 1039 80.9
PGR083G1937 Punica granatum HOM05D005223 ORTHO05D006449 0.0e+00 1287.3 1026 66.1
QL10p005060 Quercus lobata HOM05D005223 ORTHO05D006449 0.0e+00 1271.1 1019 64.4
Cfa018892 Carpinus fangiana HOM05D005223 ORTHO05D006449 0.0e+00 1264.6 1020 64.2
Atru.chr9.1012 Acer truncatum HOM05D005223 ORTHO05D006449 0.0e+00 1262.3 1020 63.6
Haze_07276 Corylus avellana HOM05D005223 ORTHO05D006449 0.0e+00 1252.7 1020 63.9
Gorai.001G061400 Gossypium raimondii HOM05D005223 ORTHO05D006449 0.0e+00 1236.5 1017 63.4
Gohir.A07G053500 Gossypium hirsutum HOM05D005223 ORTHO05D006449 0.0e+00 1234.9 1017 63.8
Gohir.D07G057900 Gossypium hirsutum HOM05D005223 ORTHO05D006449 0.0e+00 1234.6 1017 63.2
MD14G1163600 Malus domestica HOM05D005223 ORTHO05D006449 0.0e+00 1234.6 1016 63.5
TWI14G1297 Tripterygium wilfordii HOM05D005223 ORTHO05D006449 0.0e+00 1227.2 1026 62.7
GSVIVG01007540001 Vitis vinifera HOM05D005223 ORTHO05D006449 0.0e+00 1224.9 1051 60.5
Thecc.03G122800 Theobroma cacao HOM05D005223 ORTHO05D006449 0.0e+00 1223.0 1016 62.7
Dinv38469 Davidia involucrata HOM05D005223 ORTHO05D006449 0.0e+00 1221.5 998 62.6
Prupe.5G157000 Prunus persica HOM05D005223 ORTHO05D006449 0.0e+00 1218.4 1018 62.6
RcHm_v2.0_Chr7g0191161 Rosa chinensis HOM05D005223 ORTHO05D006449 0.0e+00 1201.8 1017 61.3
Ciclev10018616m.g Citrus clementina HOM05D005223 ORTHO05D006449 0.0e+00 1196.8 1017 61.5
CANSAT80G2773 Cannabis sativa HOM05D005223 ORTHO05D006449 0.0e+00 1194.1 1019 61.1
FAN18G3380 Fragaria x ananassa HOM05D005223 ORTHO05D006449 0.0e+00 1194.1 1017 61.0
FAN04G2946 Fragaria x ananassa HOM05D005223 ORTHO05D006449 0.0e+00 1189.1 1017 60.8
CSS0037650 Camellia sinensis var. sinensis HOM05D005223 ORTHO05D006449 0.0e+00 1188.7 1023 60.7
ClCG03G003490 Citrullus lanatus HOM05D005223 ORTHO05D006449 0.0e+00 1186.0 1016 59.6
FvH4_5g07490 Fragaria vesca HOM05D005223 ORTHO05D006449 0.0e+00 1185.6 1017 60.8
FAN13G2650 Fragaria x ananassa HOM05D005223 ORTHO05D006449 0.0e+00 1183.7 1022 60.6
Potri.015G090700 Populus trichocarpa HOM05D005223 ORTHO05D006449 0.0e+00 1183.7 1020 61.5
CsaV3_1G009290 Cucumis sativus L. HOM05D005223 ORTHO05D006449 0.0e+00 1174.1 1016 59.2
Manes.06G115300 Manihot esculenta HOM05D005223 ORTHO05D006449 0.0e+00 1172.1 1017 60.0
MELO3C002332.2 Cucumis melo HOM05D005223 ORTHO05D006449 0.0e+00 1169.1 1016 58.8
TAR629G2346 Trochodendron aralioides HOM05D005223 ORTHO05D006449 0.0e+00 1162.5 1012 60.1
Sed0011232 Sechium edule HOM05D005223 ORTHO05D006449 0.0e+00 1161.7 1016 58.8
Lj9C475T6 Lonicera japonica HOM05D005223 ORTHO05D006449 0.0e+00 1157.5 1039 58.4
Hma1.2p1_0123F.1_g058130 Hydrangea macrophylla HOM05D005223 ORTHO05D006449 0.0e+00 1154.8 1021 58.9
Ca_16089_v3 Cicer arietinum L. HOM05D005223 ORTHO05D006449 0.0e+00 1154.4 1021 59.0
Sabra15G0112800 Salix brachista HOM05D005223 ORTHO05D000001 0.0e+00 1152.5 991 61.6
Glyma.04G193000 Glycine max HOM05D005223 ORTHO05D006449 0.0e+00 1149.4 1017 58.7
Nn4g22461 Nelumbo nucifera HOM05D005223 ORTHO05D006449 0.0e+00 1145.6 1024 59.6
Phvul.009G168800 Phaseolus vulgaris HOM05D005223 ORTHO05D006449 0.0e+00 1145.6 1020 58.9
Duzib084G0239 Durio zibethinus HOM05D005223 ORTHO05D006449 0.0e+00 1144.8 1017 60.2
Medtr3g075100 Medicago truncatula HOM05D005223 ORTHO05D006449 0.0e+00 1140.9 1019 57.6
VMungo1309G0017 Vigna mungo HOM05D005223 ORTHO05D006449 0.0e+00 1140.2 1019 58.4
Rhsim08G0185000 Rhododendron simsii HOM05D005223 ORTHO05D006449 0.0e+00 1139.4 1021 59.0
TPR.G13978 Trifolium pratense HOM05D005223 ORTHO05D006449 0.0e+00 1129.8 1024 57.6
Lalb_Chr08g0236961 Lupinus albus HOM05D005223 ORTHO05D006449 0.0e+00 1129.4 1019 57.8
Lj1g0000662 Lotus japonicus HOM05D005223 ORTHO05D006449 0.0e+00 1128.2 1022 58.1
vmacro19239 Vaccinium macrocarpon HOM05D005223 ORTHO05D006449 0.0e+00 1114.4 1071 56.0
PGSC0003DMG400025026 Solanum tuberosum HOM05D005223 ORTHO05D006449 0.0e+00 1101.7 1015 57.5
CiPaw.12G035700 Carya illinoinensis HOM05D005223 ORTHO05D006449 0.0e+00 1101.3 904 63.2
arahy.Tifrunner.gnm1.ann1.D4E4RT Arachis hypogaea HOM05D005223 ORTHO05D006449 0.0e+00 1100.5 1055 55.3
Aqoxy5G03583 Aquilegia oxysepala HOM05D005223 ORTHO05D006449 0.0e+00 1096.3 1022 56.3
Nitab4.5_0000955g0070 Nicotiana tabacum HOM05D005223 ORTHO05D006449 0.0e+00 1090.9 1022 56.9
Solyc10g006780.4 Solanum lycopersicum HOM05D005223 ORTHO05D006449 0.0e+00 1089.3 1014 56.5
Sopen10g002700 Solanum pennellii HOM05D005223 ORTHO05D006449 0.0e+00 1087.8 1015 56.7
HanXRQChr05g0154741 Helianthus annuus HOM05D005223 ORTHO05D006449 0.0e+00 1087.0 1014 55.5
AL5G27880 Arabidopsis lyrata HOM05D005223 ORTHO05D006449 0.0e+00 1082.0 1022 56.6
Nitab4.5_0002775g0020 Nicotiana tabacum HOM05D005223 ORTHO05D006449 0.0e+00 1081.6 1021 56.5
Cc04_g10370 Coffea canephora HOM05D005223 ORTHO05D006449 0.0e+00 1078.2 1017 56.1
MSTRG.11293 Avicennia marina HOM05D005223 ORTHO05D006449 0.0e+00 1077.4 1013 56.9
Carub.0005s1465 Capsella rubella HOM05D005223 ORTHO05D006449 0.0e+00 1077.4 1017 56.3
ECA246G2102 Erigeron canadensis HOM05D005223 ORTHO05D006449 2.0e-309 1065.8 1017 55.5
THA.LOC104818196 Tarenaya hassleriana HOM05D005223 ORTHO05D006449 2.6e-309 1065.4 1021 55.0
AT3G48470 Arabidopsis thaliana HOM05D005223 ORTHO05D006449 3.4e-309 1065.1 1023 55.6
CAN.G1110.40 Capsicum annuum HOM05D005223 ORTHO05D006449 2.2e-308 1062.4 1020 55.8
DCAR_021603 Daucus carota HOM05D005223 ORTHO05D006449 3.8e-308 1061.6 1014 56.1
PSO063G1058 Papaver somniferum HOM05D005223 ORTHO05D006449 3.2e-307 1058.5 1017 55.5
SGA_v2.0_scaffold457G51932 Striga asiatica HOM05D005223 ORTHO05D006449 7.1e-307 1057.4 1022 55.9
CARHR157230 Cardamine hirsuta HOM05D005223 ORTHO05D006449 6.0e-306 1054.3 1022 55.1
Migut.I00475 Erythranthe guttata HOM05D005223 ORTHO05D006449 1.8e-305 1052.7 1011 54.4
Sp5g13560 Schrenkiella parvula HOM05D005223 ORTHO05D006449 1.1e-304 1050.0 1019 55.1
C03p66340 Brassica napus HOM05D005223 ORTHO05D006449 1.5e-301 1039.6 1022 54.6
Peaxi162Scf00536g00422 Petunia axillaris HOM05D005223 ORTHO05D006449 2.6e-301 1038.9 1012 55.6
BcaB02g10650 Brassica carinata HOM05D005223 ORTHO05D006449 7.6e-301 1037.3 1026 54.7
BcaC01g02344 Brassica carinata HOM05D005223 ORTHO05D006449 1.4e-299 1033.1 1022 54.5
BraA06t25704Z Brassica rapa HOM05D005223 ORTHO05D006449 4.2e-299 1031.6 1023 54.6
SalBow5G2547 Salvia bowleyana HOM05D005223 ORTHO05D006449 6.7e-297 1024.2 1053 52.3
Sc10g0010350 Simmondsia chinensis HOM05D005223 ORTHO05D006449 6.7e-297 1024.2 964 55.7
A06p27680 Brassica napus HOM05D005223 ORTHO05D006449 1.9e-296 1022.7 1023 54.4
Lsat_1_v5_gn_5_13240 Lactuca sativa HOM05D005223 ORTHO05D006449 2.8e-295 1018.8 990 54.9
BolC3t18905H Brassica oleracea HOM05D005223 ORTHO05D006449 5.3e-294 1014.6 1042 53.5
Psat5g141880 Pisum sativum HOM05D005223 ORTHO05D006449 1.0e-292 1010.4 906 57.8
ATR0824G104 Amborella trichopoda HOM05D005223 ORTHO05D006449 9.1e-286 987.3 1023 52.4
COL.COLO4_09267 Corchorus olitorius HOM05D005223 ORTHO05D006449 3.4e-285 985.3 856 61.4
EL10Ac7g18074 Beta vulgaris HOM05D005223 ORTHO05D006449 7.7e-285 984.2 1017 54.0
AUR62001278 Chenopodium quinoa HOM05D005223 ORTHO05D006449 6.5e-284 981.1 1028 54.3
AUR62025728 Chenopodium quinoa HOM05D005223 ORTHO05D006449 5.5e-283 978.0 1044 53.5
CDE02G2587 Ceratophyllum demersum HOM05D005223 ORTHO05D006449 8.8e-281 970.7 1034 50.7
Thhalv10010098m.g Eutrema salsugineum HOM05D005223 ORTHO05D006449 2.2e-276 956.1 1023 51.6
Hund18539 Selenicereus undatus HOM05D005223 ORTHO05D006449 7.2e-275 951.0 987 54.1
Zm00001eb246300 Zea mays HOM05D005223 ORTHO05D006449 5.9e-261 904.8 998 48.2
Os02g0598800 Oryza sativa ssp. japonica HOM05D005223 ORTHO05D006449 1.2e-258 897.1 1018 48.8
SGA_v2.0_scaffold50G18602 Striga asiatica HOM05D005223 ORTHO05D006449 4.9e-255 885.2 1024 49.8
arahy.Tifrunner.gnm1.ann1.9N92ER Arachis hypogaea HOM05D005223 ORTHO05D006449 2.9e-252 875.9 783 58.9
Glyma.06G172900 Glycine max HOM05D005223 ORTHO05D006449 2.5e-251 872.8 737 60.0
Os02g0599100 Oryza sativa ssp. japonica HOM05D005223 ORTHO05D006449 2.5e-187 660.2 663 54.3
Os02g0598400 Oryza sativa ssp. japonica HOM05D005223 ORTHO05D006449 2.8e-186 656.8 662 54.2
Aa31LG4G17060 Aethionema arabicum HOM05D005223 ORTHO05D006449 2.9e-183 646.7 637 55.9
CSS0005553 Camellia sinensis var. sinensis HOM05D005223 ORTHO05D006449 9.4e-182 641.7 644 55.0
Actinidia19387 Actinidia chinensis HOM05D005223 ORTHO05D006449 7.4e-171 605.5 576 54.7
Cpa.g.sc52.35 Carica papaya HOM05D005223 ORTHO05D006449 1.2e-168 598.2 576 58.0
Pp3c24_17160 Physcomitrium patens HOM05D005223 ORTHO05D006449 2.2e-154 550.8 1070 35.8
Mapoly0075s0016 Marchantia polymorpha HOM05D005223 ORTHO05D006449 6.3e-146 522.7 1089 35.1
SHI10647 Sapria himalayana HOM05D005223 ORTHO05D006449 8.6e-143 512.3 546 54.0
Oeu007006.1 Olea europaea HOM05D005223 ORTHO05D006449 3.7e-130 470.3 356 68.0
SMO367G0489 Selaginella moellendorffii HOM05D005223 ORTHO05D006449 1.4e-129 468.4 901 35.4
CBR_g45764 Chara braunii HOM05D005223 ORTHO05D006449 8.1e-93 346.3 1125 27.8
Oeu057221.1 Olea europaea HOM05D005223 ORTHO05D006449 1.3e-90 339.0 382 47.9
CBR_g52378 Chara braunii HOM05D005223 ORTHO05D006449 2.4e-89 334.7 1134 28.2
Aa31LG4G17050 Aethionema arabicum HOM05D005223 ORTHO05D006449 2.1e-88 331.6 429 43.6
FvH4_5g07461 Fragaria vesca HOM05D005223 ORTHO05D006449 1.3e-87 328.9 330 53.9
Cpa.g.sc52.34 Carica papaya HOM05D005223 ORTHO05D006449 1.8e-84 318.5 358 48.0
MBI11_g36316_MAGBIO Magnolia biondii HOM05D005223 ORTHO05D006449 3.3e-54 218.0 218 54.1
FvH4_3g25520 Fragaria vesca HOM05D005223 ORTHO05D006449 2.2e-53 215.3 258 46.5
FvH4_5g07361 Fragaria vesca HOM05D005223 ORTHO05D006449 3.2e-49 201.4 559 30.6
MD06G1153900 Malus domestica HOM05D005223 ORTHO05D006449 1.8e-44 185.7 148 68.2
Nn8g40428 Nelumbo nucifera HOM05D005223 ORTHO05D006449 1.2e-43 183.0 144 63.9
FvH4_5g07460 Fragaria vesca HOM05D005223 ORTHO05D006449 3.6e-40 171.4 220 46.4
SEGI_02888 Sequoiadendron giganteum HOM05D005223 ORTHO05D006449 4.0e-31 141.4 216 39.4
Lsat_1_v5_gn_0_22080 Lactuca sativa HOM05D005223 ORTHO05D006449 6.8e-31 140.6 149 46.3
QL10p005098 Quercus lobata HOM05D005223 ORTHO05D006449 4.1e-28 131.3 165 47.3
Cre03.g186550 Chlamydomonas reinhardtii HOM05D005223 ORTHO05D006449 3.8e-26 124.8 433 27.9
Nn7g38107 Nelumbo nucifera HOM05D005223 ORTHO05D006449 1.5e-22 112.8 114 52.6
SalBow5G3736 Salvia bowleyana HOM05D005223 ORTHO05D006449 2.6e-22 112.1 95 57.9
SEGI_05777 Sequoiadendron giganteum HOM05D005223 ORTHO05D006449 1.7e-21 109.4 157 39.5
SalBow1G2179 Salvia bowleyana HOM05D005223 ORTHO05D006449 2.3e-18 99.0 73 63.0
SalBow1G1130 Salvia bowleyana HOM05D005223 ORTHO05D006449 8.6e-18 97.1 74 60.8
ECA246G0437 Erigeron canadensis HOM05D005223 ORTHO05D006449 4.3e-17 94.7 221 33.9
Nn3g20975 Nelumbo nucifera HOM05D005223 ORTHO05D006449 9.5e-17 93.6 103 50.5
Actinidia25613 Actinidia chinensis HOM05D005223 ORTHO05D006449 2.1e-16 92.4 127 40.2
RcHm_v2.0_Chr1g0339741 Rosa chinensis HOM05D005223 ORTHO05D006449 8.0e-16 90.5 64 68.8
AagrBONN_evm.TU.Sc2ySwM_228.970 Anthoceros agrestis HOM05D005223 ORTHO05D006449 3.1e-15 88.6 218 31.7
RcHm_v2.0_Chr4g0412201 Rosa chinensis HOM05D005223 ORTHO05D006449 7.5e-14 84.0 64 65.6
RcHm_v2.0_Chr0c39g0503251 Rosa chinensis HOM05D005223 ORTHO05D006449 1.7e-13 82.8 64 57.8
RcHm_v2.0_Chr1g0353191 Rosa chinensis HOM05D005223 ORTHO05D006449 1.7e-13 82.8 64 57.8
HPP92_024695 Vanilla planifolia HOM05D005223 ORTHO05D006449 3.7e-13 81.6 149 41.6
DCAR_016747 Daucus carota HOM05D000329 ORTHO05D006449 3.5e-11 75.1 50 66.0
MCO03G522 Micromonas commoda HOM05D005223 ORTHO05D006449 3.9e-10 71.6 1033 21.0
Lsat_1_v5_gn_1_114041 Lactuca sativa HOM05D005223 ORTHO05D006449 3.3e-09 68.6 77 42.9
Nitab4.5_0004801g0040 Nicotiana tabacum HOM05D000112 ORTHO05D001327 1.6e-08 66.2 37 81.1
MD00G1179800 Malus domestica HOM05D005223 ORTHO05D006449 4.0e-07 61.6 52 61.5


User provided reference genes

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