Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.L01323 Eucalyptus grandis HOM05D007003 ORTHO05D008499 5.4e-184 647.5 322 100.0
Eucgr.F00790 Eucalyptus grandis HOM05D007003 ORTHO05D008499 1.9e-149 532.7 318 86.8
Eucgr.F00779 Eucalyptus grandis HOM05D007003 ORTHO05D008499 2.0e-146 522.7 338 80.8
Eucgr.F00955 Eucalyptus grandis HOM05D007003 ORTHO05D008499 1.7e-142 509.6 307 84.7
Eucgr.F00879 Eucalyptus grandis HOM05D007003 ORTHO05D008499 3.9e-142 508.4 302 87.1
Eucgr.F00913 Eucalyptus grandis HOM05D007003 ORTHO05D008499 2.9e-121 439.1 328 72.3
Eucgr.F00897 Eucalyptus grandis HOM05D007003 ORTHO05D008499 1.2e-119 433.7 301 76.4
Eucgr.F00928 Eucalyptus grandis HOM05D007003 ORTHO05D008499 3.0e-118 429.1 309 74.4
Eucgr.F00922 Eucalyptus grandis HOM05D007003 ORTHO05D008499 1.3e-116 423.7 330 71.5
Dinv40746 Davidia involucrata HOM05D007003 ORTHO05D008499 3.1e-75 286.2 338 48.8
CiPaw.12G128900 Carya illinoinensis HOM05D007003 ORTHO05D008499 1.6e-74 283.9 348 48.3
PGR119G0071 Punica granatum HOM05D007003 ORTHO05D008499 2.5e-72 276.6 359 48.7
Gohir.A04G018400 Gossypium hirsutum HOM05D007003 ORTHO05D008499 3.3e-72 276.2 330 47.6
Gohir.D05G367600 Gossypium hirsutum HOM05D007003 ORTHO05D008499 4.7e-71 272.3 329 46.2
vmacro11731 Vaccinium macrocarpon HOM05D007003 ORTHO05D008499 1.4e-70 270.8 314 48.1
CSS0047719 Camellia sinensis var. sinensis HOM05D007003 ORTHO05D008499 4.0e-70 269.2 339 47.5
Gorai.009G435200 Gossypium raimondii HOM05D007003 ORTHO05D008499 4.0e-70 269.2 329 45.9
Manes.03G124400 Manihot esculenta HOM05D007003 ORTHO05D008499 9.8e-69 264.6 314 47.8
Medtr5g092280 Medicago truncatula HOM05D007003 ORTHO05D008499 1.4e-67 260.8 326 45.7
Actinidia36944 Actinidia chinensis HOM05D001273 ORTHO05D000023 1.6e-66 257.3 311 48.9
Thecc.07G042400 Theobroma cacao HOM05D007003 ORTHO05D008499 2.0e-66 256.9 411 40.1
VMungo0647G1301 Vigna mungo HOM05D007003 ORTHO05D008499 2.0e-66 256.9 355 44.5
Lalb_Chr04g0248491 Lupinus albus HOM05D007003 ORTHO05D008499 2.7e-66 256.5 342 44.2
Rhsim06G0216400 Rhododendron simsii HOM05D000561 ORTHO05D000514 2.7e-66 256.5 311 48.2
Atru.chr2.3373 Acer truncatum HOM05D007003 ORTHO05D008499 5.9e-66 255.4 371 43.9
CANSAT21G1622 Cannabis sativa HOM05D007003 ORTHO05D008499 7.8e-66 255.0 403 40.4
Potri.001G423900 Populus trichocarpa HOM05D007003 ORTHO05D008499 2.3e-65 253.4 323 45.8
Sabra16G0288900 Salix brachista HOM05D007003 ORTHO05D008499 2.3e-65 253.4 323 46.1
Phvul.008G266200 Phaseolus vulgaris HOM05D007003 ORTHO05D008499 5.0e-65 252.3 352 43.5
LjContig00272g0003747 Lotus japonicus HOM05D007003 ORTHO05D008499 4.3e-64 249.2 361 44.3
QL03p009927 Quercus lobata HOM05D007003 ORTHO05D008499 4.3e-64 249.2 436 39.7
QL08p011145 Quercus lobata HOM05D007003 ORTHO05D008499 4.3e-64 249.2 436 39.4
Glyma.14G024800 Glycine max HOM05D007003 ORTHO05D008499 7.3e-64 248.4 354 43.2
Sed0008518 Sechium edule HOM05D007003 ORTHO05D008499 7.3e-64 248.4 311 46.9
FvH4_3g22471 Fragaria vesca HOM05D007003 ORTHO05D008499 1.2e-63 247.7 397 40.8
arahy.Tifrunner.gnm1.ann1.422Z41 Arachis hypogaea HOM05D007003 ORTHO05D008499 2.8e-63 246.5 391 39.9
Ciclev10008359m.g Citrus clementina HOM05D007003 ORTHO05D008499 2.8e-63 246.5 370 43.2
THA.LOC104817663 Tarenaya hassleriana HOM05D007003 ORTHO05D008499 6.2e-63 245.4 355 43.4
FAN21G0080 Fragaria x ananassa HOM05D007003 ORTHO05D008499 1.0e-62 244.6 397 40.6
MELO3C018208.2 Cucumis melo HOM05D007003 ORTHO05D008499 2.3e-62 243.4 309 44.3
Haze_09661 Corylus avellana HOM05D007003 ORTHO05D008499 3.1e-62 243.0 421 39.9
Cfa020358 Carpinus fangiana HOM05D007003 ORTHO05D008499 5.2e-62 242.3 413 40.2
MD11G1220900 Malus domestica HOM05D001273 ORTHO05D008499 5.2e-62 242.3 397 40.6
PGSC0003DMG400042605 Solanum tuberosum HOM05D007003 ORTHO05D008499 8.9e-62 241.5 306 45.4
CsaV3_3G044430 Cucumis sativus L. HOM05D007003 ORTHO05D008499 1.5e-61 240.7 311 46.0
Sopen07g032680 Solanum pennellii HOM05D007003 ORTHO05D008499 1.5e-61 240.7 306 43.8
Nitab4.5_0001913g0010 Nicotiana tabacum HOM05D007003 ORTHO05D008499 2.6e-61 240.0 306 44.8
RcHm_v2.0_Chr5g0039141 Rosa chinensis HOM05D007003 ORTHO05D008499 3.4e-61 239.6 403 37.5
TPR.G22251 Trifolium pratense HOM05D007003 ORTHO05D008499 5.8e-61 238.8 312 45.5
arahy.Tifrunner.gnm1.ann1.6A6QM9 Arachis hypogaea HOM05D007003 ORTHO05D008499 7.5e-61 238.4 400 39.2
GSVIVG01037627001 Vitis vinifera HOM05D007003 ORTHO05D008499 7.5e-61 238.4 343 44.9
Oeu007586.1 Olea europaea HOM05D007003 ORTHO05D008499 1.3e-60 237.7 317 45.1
TAR627G0793 Trochodendron aralioides HOM05D007003 ORTHO05D008499 1.7e-60 237.3 375 40.0
Solyc07g064480.1 Solanum lycopersicum HOM05D007003 ORTHO05D008499 2.2e-60 236.9 306 45.1
Cpa.g.sc97.17 Carica papaya HOM05D007003 ORTHO05D008499 2.9e-60 236.5 411 38.4
C02p16580 Brassica napus HOM05D001404 ORTHO05D002309 8.3e-60 235.0 316 46.8
CARHR268220 Cardamine hirsuta HOM05D007003 ORTHO05D008499 1.1e-59 234.6 333 44.1
A02p10000 Brassica napus HOM05D001404 ORTHO05D008499 2.4e-59 233.4 315 46.7
BraA02t06064Z Brassica rapa HOM05D001404 ORTHO05D002309 2.4e-59 233.4 315 46.7
Nitab4.5_0003812g0060 Nicotiana tabacum HOM05D007003 ORTHO05D008499 4.1e-59 232.6 313 43.8
Peaxi162Scf00964g00113 Petunia axillaris HOM05D007003 ORTHO05D008499 5.4e-59 232.3 308 43.8
Sp6g16850 Schrenkiella parvula HOM05D007003 ORTHO05D008499 5.4e-59 232.3 337 44.8
AL8G30340 Arabidopsis lyrata HOM05D007003 ORTHO05D008499 7.0e-59 231.9 355 42.3
BolC2t07756H Brassica oleracea HOM05D001404 ORTHO05D002309 2.7e-58 229.9 316 46.2
Cc05_g13800 Coffea canephora HOM05D007003 ORTHO05D008499 4.6e-58 229.2 313 42.8
Prupe.4G211300 Prunus persica HOM05D007003 ORTHO05D008499 4.6e-58 229.2 406 39.7
BcaB05g22167 Brassica carinata HOM05D007003 ORTHO05D008499 7.8e-58 228.4 315 45.1
PSO675G0160 Papaver somniferum HOM05D007003 ORTHO05D008499 7.8e-58 228.4 315 44.4
Lj1P870T43 Lonicera japonica HOM05D007003 ORTHO05D008499 1.0e-57 228.0 316 42.7
Cfa020360 Carpinus fangiana HOM05D007003 ORTHO05D008499 1.3e-57 227.6 399 40.1
Migut.M01775 Erythranthe guttata HOM05D007003 ORTHO05D008499 2.3e-57 226.9 321 43.0
Nn1g03566 Nelumbo nucifera HOM05D007003 ORTHO05D008499 2.3e-57 226.9 414 36.0
AT5G54880 Arabidopsis thaliana HOM05D007003 ORTHO05D008499 3.9e-57 226.1 337 42.4
Thhalv10013739m.g Eutrema salsugineum HOM05D007003 ORTHO05D008499 3.9e-57 226.1 340 43.2
Lsat_1_v5_gn_5_6061 Lactuca sativa HOM05D007003 ORTHO05D008499 5.0e-57 225.7 316 43.0
Duzib213G0769 Durio zibethinus HOM05D007003 ORTHO05D008499 6.6e-57 225.3 467 36.0
AUR62020466 Chenopodium quinoa HOM05D007003 ORTHO05D008499 1.1e-56 224.6 363 39.9
DCAR_022556 Daucus carota HOM05D007003 ORTHO05D008499 1.9e-56 223.8 312 43.6
ECA246G4814 Erigeron canadensis HOM05D001273 ORTHO05D000023 2.5e-56 223.4 321 40.8
TWI39G0907 Tripterygium wilfordii HOM05D007003 ORTHO05D008499 2.5e-56 223.4 312 45.2
AUR62015746 Chenopodium quinoa HOM05D007003 ORTHO05D008499 7.3e-56 221.9 365 40.3
EL10Ac4g07838 Beta vulgaris HOM05D007003 ORTHO05D008499 8.1e-55 218.4 351 37.6
Aa31LG3G10810 Aethionema arabicum HOM05D007003 ORTHO05D008499 1.1e-54 218.0 334 40.1
Ah.04g165820 Amaranthus hybridus HOM05D007003 ORTHO05D008499 1.1e-54 218.0 338 40.5
HPP92_012320 Vanilla planifolia HOM05D007003 ORTHO05D008499 2.9e-52 209.9 337 39.5
HPP92_012396 Vanilla planifolia HOM05D007003 ORTHO05D008499 2.9e-52 209.9 337 39.5
ATR0752G213 Amborella trichopoda HOM05D007003 ORTHO05D008499 2.4e-51 206.8 409 35.2
SGA_v2.0_scaffold424G51477 Striga asiatica HOM05D007003 ORTHO05D008499 9.2e-51 204.9 335 42.1
Psat2g013360 Pisum sativum HOM05D007003 ORTHO05D008499 2.3e-49 200.3 315 41.0
Aqoxy7G03837 Aquilegia oxysepala HOM05D007003 ORTHO05D008499 6.6e-49 198.7 369 36.9
unitig_578.g16000 Utricularia gibba HOM05D007003 ORTHO05D008499 4.3e-48 196.1 327 40.7
Sc16g0006140 Simmondsia chinensis HOM05D007003 ORTHO05D008499 1.8e-46 190.7 363 36.6
Ca_26481_v3 Cicer arietinum L. HOM05D007003 ORTHO05D008499 4.1e-43 179.5 242 43.0
CDE11G0477 Ceratophyllum demersum HOM05D007003 ORTHO05D008499 7.8e-42 175.3 279 36.9
Zm00001eb219850 Zea mays HOM05D007003 ORTHO05D008499 1.5e-40 171.0 463 28.9
MBI02_g19288_MAGBIO Magnolia biondii HOM05D007003 ORTHO05D008499 6.2e-39 165.6 529 27.6
Actinidia05100 Actinidia chinensis HOM05D007003 ORTHO05D008499 4.0e-38 162.9 179 51.4
MBI02_g22102_MAGBIO Magnolia biondii HOM05D007003 ORTHO05D008499 4.4e-37 159.5 151 52.3
Os03g0568600 Oryza sativa ssp. japonica HOM05D007003 ORTHO05D008499 2.2e-36 157.1 463 28.3
SalBow8G3099 Salvia bowleyana HOM05D007003 ORTHO05D008499 5.4e-35 152.5 139 55.4
Carub.0008s1518 Capsella rubella HOM05D007003 ORTHO05D008499 2.7e-34 150.2 252 39.3
TPR.G17434 Trifolium pratense HOM05D007003 ORTHO05D008499 8.7e-33 145.2 158 50.0
SEGI_36701 Sequoiadendron giganteum HOM05D007003 ORTHO05D008499 5.6e-32 142.5 313 31.0
BcaC03g14277 Brassica carinata HOM05D007003 ORTHO05D008499 2.8e-31 140.2 133 54.1
Zm00001eb026290 Zea mays HOM05D007003 ORTHO05D008499 5.8e-29 132.5 126 50.8
TPR.G22255 Trifolium pratense HOM05D005190 ORTHO05D006183 2.9e-28 130.2 238 39.1
AagrBONN_evm.TU.Sc2ySwM_362.2079 Anthoceros agrestis HOM05D007003 ORTHO05D008499 1.6e-26 124.4 333 29.7
Ca_03331_v3 Cicer arietinum L. HOM05D007003 ORTHO05D008499 4.0e-22 109.8 84 57.1
Pp3c4_4830 Physcomitrium patens HOM05D007003 ORTHO05D008499 3.4e-21 106.7 316 28.5
SMO339G0013 Selaginella moellendorffii HOM05D007003 ORTHO05D008499 7.1e-19 99.0 306 26.8
MBI02_g22101_MAGBIO Magnolia biondii HOM05D007003 ORTHO05D002463 2.1e-18 97.4 94 54.3
Mapoly0032s0131 Marchantia polymorpha HOM05D007003 ORTHO05D008499 4.6e-18 96.3 322 27.6
CAN.G337.121 Capsicum annuum HOM05D007003 ORTHO05D008499 1.3e-17 94.7 91 52.7
MD03G1204100 Malus domestica HOM05D007003 ORTHO05D008499 1.3e-17 94.7 91 57.1
Zm00001eb352490 Zea mays HOM05D006576 ORTHO05D008499 3.9e-17 93.2 94 51.1
TPR.G1180 Trifolium pratense HOM05D007003 ORTHO05D008499 5.1e-17 92.8 73 60.3
TPR.G1231 Trifolium pratense HOM05D007003 ORTHO05D008499 7.4e-16 89.0 102 49.0
ClCG05G014280 Citrullus lanatus HOM05D007003 ORTHO05D008499 6.2e-15 85.9 56 67.9
CAN.G337.122 Capsicum annuum HOM05D007003 ORTHO05D008499 5.3e-14 82.8 50 68.0


User provided reference genes

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