Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.L01317 Eucalyptus grandis HOM05D004574 ORTHO05D005612 2.9e-181 638.6 379 100.0
Eucgr.C04065 Eucalyptus grandis HOM05D004574 ORTHO05D005612 2.8e-155 552.4 448 79.0
Eucgr.L02934 Eucalyptus grandis HOM05D004574 ORTHO05D005612 4.8e-107 392.1 328 73.8
Duzib168G1873 Durio zibethinus HOM05D004574 ORTHO05D005612 4.0e-69 266.2 369 46.6
Gohir.A06G049000 Gossypium hirsutum HOM05D004574 ORTHO05D005612 1.5e-68 264.2 373 47.2
PGR102G2914 Punica granatum HOM05D004574 ORTHO05D005612 1.5e-68 264.2 370 50.3
Gorai.010G054900 Gossypium raimondii HOM05D004574 ORTHO05D005612 3.1e-66 256.5 389 44.7
Gohir.D06G048700 Gossypium hirsutum HOM05D004574 ORTHO05D005612 2.0e-65 253.8 380 45.8
Dinv42911 Davidia involucrata HOM05D004574 ORTHO05D005612 1.5e-63 247.7 374 47.3
Dinv43190 Davidia involucrata HOM05D004574 ORTHO05D005612 1.5e-63 247.7 374 47.3
CiPaw.16G117400 Carya illinoinensis HOM05D004574 ORTHO05D005612 1.9e-63 247.3 358 46.4
Atru.chr7.229_Atru.chr7.228 Acer truncatum HOM05D004574 ORTHO05D005612 3.3e-63 246.5 339 46.0
Duzib187G1624 Durio zibethinus HOM05D004574 ORTHO05D005612 4.2e-63 246.1 369 43.9
Thecc.09G142400 Theobroma cacao HOM05D004574 ORTHO05D005612 9.5e-63 245.0 360 48.1
TWI34G0786 Tripterygium wilfordii HOM05D004574 ORTHO05D005612 3.4e-60 236.5 341 44.3
Manes.14G139500 Manihot esculenta HOM05D004574 ORTHO05D005612 4.4e-60 236.1 367 46.0
Prupe.7G253700 Prunus persica HOM05D004574 ORTHO05D005612 9.8e-60 235.0 358 46.4
Sabra06G0145700 Salix brachista HOM05D004574 ORTHO05D005612 9.8e-60 235.0 379 40.4
Cfa020884 Carpinus fangiana HOM05D004574 ORTHO05D005612 3.7e-59 233.0 336 45.2
Haze_19313 Corylus avellana HOM05D004574 ORTHO05D005612 3.7e-59 233.0 348 45.7
Ciclev10007567m.g Citrus clementina HOM05D004574 ORTHO05D005612 2.4e-58 230.3 339 44.0
Actinidia04251 Actinidia chinensis HOM05D004574 ORTHO05D005612 3.1e-58 229.9 346 43.1
Potri.018G113600 Populus trichocarpa HOM05D004574 ORTHO05D005612 1.2e-57 228.0 370 42.7
Potri.006G189501 Populus trichocarpa HOM05D004574 ORTHO05D005612 2.7e-57 226.9 338 43.5
CANSAT11G2415 Cannabis sativa HOM05D004574 ORTHO05D005612 1.3e-56 224.6 372 49.5
CSS0049430 Camellia sinensis var. sinensis HOM05D004574 ORTHO05D005612 6.6e-56 222.2 375 46.4
FAN26G2227 Fragaria x ananassa HOM05D004574 ORTHO05D005612 6.6e-56 222.2 381 41.2
RcHm_v2.0_Chr2g0086551 Rosa chinensis HOM05D004574 ORTHO05D005612 1.1e-55 221.5 338 42.6
FAN19G2203 Fragaria x ananassa HOM05D004574 ORTHO05D005612 1.9e-55 220.7 381 40.9
QL02p091406 Quercus lobata HOM05D004574 ORTHO05D005612 2.5e-55 220.3 378 48.4
FvH4_1g01590 Fragaria vesca HOM05D004574 ORTHO05D005612 4.3e-55 219.5 381 40.9
MD15G1158500 Malus domestica HOM05D004574 ORTHO05D005612 4.3e-55 219.5 381 40.7
Actinidia21909 Actinidia chinensis HOM05D004574 ORTHO05D005612 5.6e-55 219.2 364 44.8
GSVIVG01012900001 Vitis vinifera HOM05D004574 ORTHO05D005612 1.6e-54 217.6 351 43.0
Sabra18G0096500 Salix brachista HOM05D004574 ORTHO05D005612 2.8e-54 216.9 371 46.4
Hma1.2p1_0182F.1_g080580 Hydrangea macrophylla HOM05D004574 ORTHO05D005612 6.1e-54 215.7 384 47.4
vmacro21880 Vaccinium macrocarpon HOM05D004574 ORTHO05D005612 8.0e-54 215.3 320 48.1
FAN28G2389 Fragaria x ananassa HOM05D004574 ORTHO05D005612 5.2e-53 212.6 362 41.2
Cpa.g.sc46.91 Carica papaya HOM05D004574 ORTHO05D005612 2.6e-52 210.3 375 42.7
Oeu040778.1 Olea europaea HOM05D004574 ORTHO05D005612 3.4e-52 209.9 341 39.9
THA.LOC104815398 Tarenaya hassleriana HOM05D004574 ORTHO05D005612 7.5e-52 208.8 381 40.2
Cc06_g07390 Coffea canephora HOM05D004574 ORTHO05D005612 2.2e-51 207.2 338 47.0
Lalb_Chr12g0198521 Lupinus albus HOM05D004574 ORTHO05D005612 1.4e-50 204.5 379 47.0
CSS0028433 Camellia sinensis var. sinensis HOM05D004574 ORTHO05D005612 1.9e-50 204.1 429 39.2
Lj9A709T23 Lonicera japonica HOM05D004574 ORTHO05D005612 2.4e-50 203.8 344 49.7
MELO3C010260.2 Cucumis melo HOM05D004574 ORTHO05D005612 7.0e-50 202.2 349 39.3
Glyma.13G156900 Glycine max HOM05D004574 ORTHO05D005612 1.2e-49 201.4 334 40.1
MD02G1012700 Malus domestica HOM05D004574 ORTHO05D005612 2.0e-49 200.7 380 41.3
COL.COLO4_24086 Corchorus olitorius HOM05D004574 ORTHO05D005612 2.7e-49 200.3 310 45.8
Sed0008757 Sechium edule HOM05D004574 ORTHO05D005612 3.5e-49 199.9 349 41.8
Aa31LG3G2320 Aethionema arabicum HOM05D004574 ORTHO05D005612 4.6e-49 199.5 371 47.2
Medtr4g116570 Medicago truncatula HOM05D004574 ORTHO05D005612 6.0e-49 199.1 375 41.1
Migut.J01279 Erythranthe guttata HOM05D004574 ORTHO05D005612 8.6e-48 195.3 373 38.6
Nn2g12259 Nelumbo nucifera HOM05D004574 ORTHO05D005612 8.6e-48 195.3 343 41.4
Carub.0003s0894 Capsella rubella HOM05D004574 ORTHO05D005612 1.9e-47 194.1 375 45.6
arahy.Tifrunner.gnm1.ann1.J06XH2 Arachis hypogaea HOM05D004574 ORTHO05D005612 3.3e-47 193.4 354 45.8
DCAR_017762 Daucus carota HOM05D004574 ORTHO05D005612 3.3e-47 193.4 374 43.3
Sc18g0000060 Simmondsia chinensis HOM05D004574 ORTHO05D005612 3.3e-47 193.4 376 37.0
CsaV3_1G028540 Cucumis sativus L. HOM05D004574 ORTHO05D005612 4.3e-47 193.0 385 39.7
Thhalv10020109m.g Eutrema salsugineum HOM05D004574 ORTHO05D005612 4.3e-47 193.0 375 44.5
arahy.Tifrunner.gnm1.ann1.YXSX85 Arachis hypogaea HOM05D004574 ORTHO05D005612 7.3e-47 192.2 357 42.3
CARHR084360 Cardamine hirsuta HOM05D004574 ORTHO05D005612 7.3e-47 192.2 345 46.7
Glyma.17G104500 Glycine max HOM05D004574 ORTHO05D005612 7.3e-47 192.2 334 40.4
AL3G21080 Arabidopsis lyrata HOM05D004574 ORTHO05D005612 1.6e-46 191.0 342 46.5
TPR.G15786 Trifolium pratense HOM05D004574 ORTHO05D005612 3.6e-46 189.9 377 42.7
ClCG06G012070 Citrullus lanatus HOM05D004574 ORTHO05D005612 6.2e-46 189.1 383 37.1
Aqoxy7G03519 Aquilegia oxysepala HOM05D004574 ORTHO05D005612 8.0e-46 188.7 364 45.6
Nitab4.5_0001671g0130 Nicotiana tabacum HOM05D004574 ORTHO05D005612 8.0e-46 188.7 387 40.6
Lj4g0023014 Lotus japonicus HOM05D004574 ORTHO05D005612 1.4e-45 188.0 373 38.1
AT3G09850 Arabidopsis thaliana HOM05D004574 ORTHO05D005612 8.9e-45 185.3 338 43.2
Sed0022583 Sechium edule HOM05D004574 ORTHO05D005612 1.2e-44 184.9 352 39.2
Psat4g033240 Pisum sativum HOM05D004574 ORTHO05D005612 1.5e-44 184.5 344 39.2
CAN.G518.8 Capsicum annuum HOM05D004574 ORTHO05D005612 3.4e-44 183.3 379 39.1
AUR62011249 Chenopodium quinoa HOM05D004574 ORTHO05D005612 7.5e-44 182.2 357 46.5
Lalb_Chr07g0179541 Lupinus albus HOM05D004574 ORTHO05D005612 7.5e-44 182.2 379 40.9
Hund14397 Selenicereus undatus HOM05D004574 ORTHO05D005612 9.8e-44 181.8 405 41.2
A05p39200 Brassica napus HOM05D004574 ORTHO05D005612 2.9e-43 180.3 337 43.0
FAN23G1466 Fragaria x ananassa HOM05D004574 ORTHO05D005612 3.7e-43 179.9 384 37.8
Phvul.003G175300 Phaseolus vulgaris HOM05D004574 ORTHO05D005612 3.7e-43 179.9 355 44.2
MSTRG.19628 Avicennia marina HOM05D004574 ORTHO05D005612 8.3e-43 178.7 344 38.7
Peaxi162Scf00347g00125 Petunia axillaris HOM05D004574 ORTHO05D005612 1.1e-42 178.3 386 41.7
Sp3g08180 Schrenkiella parvula HOM05D004574 ORTHO05D005612 1.1e-42 178.3 338 45.6
CSS0003558 Camellia sinensis var. sinensis HOM05D004574 ORTHO05D005612 1.6e-41 174.5 313 44.4
SGA_v2.0_scaffold229G43349 Striga asiatica HOM05D004574 ORTHO05D005612 2.7e-41 173.7 339 46.9
Nitab4.5_0001151g0100 Nicotiana tabacum HOM05D004574 ORTHO05D005612 3.5e-41 173.3 387 39.8
BcaC05g29496 Brassica carinata HOM05D004574 ORTHO05D005612 7.8e-41 172.2 346 41.0
C05p58250 Brassica napus HOM05D004574 ORTHO05D005612 7.8e-41 172.2 346 41.0
Ah.09g223910 Amaranthus hybridus HOM05D004574 ORTHO05D005612 3.0e-40 170.2 404 38.1
EL10Ac8g18810 Beta vulgaris HOM05D004574 ORTHO05D005612 3.9e-40 169.9 378 43.7
BraA05t22709Z Brassica rapa HOM05D004574 ORTHO05D005612 6.6e-40 169.1 337 41.8
Ca_21611_v3 Cicer arietinum L. HOM05D004574 ORTHO05D005612 1.1e-39 168.3 376 36.2
Sopen07g003110 Solanum pennellii HOM05D004574 ORTHO05D005612 1.1e-39 168.3 387 35.9
Solyc07g007040.4 Solanum lycopersicum HOM05D004574 ORTHO05D005612 2.5e-39 167.2 386 40.7
VMungo1215G1939 Vigna mungo HOM05D004574 ORTHO05D005612 2.5e-39 167.2 332 44.3
AUR62041455 Chenopodium quinoa HOM05D004574 ORTHO05D005612 3.3e-39 166.8 339 38.9
Lsat_1_v5_gn_8_60221 Lactuca sativa HOM05D004574 ORTHO05D005612 5.6e-39 166.0 369 45.3
BolC5t34479H Brassica oleracea HOM05D004574 ORTHO05D005612 9.5e-39 165.2 342 41.5
MBI14_g15649_MAGBIO Magnolia biondii HOM05D004574 ORTHO05D005612 1.6e-38 164.5 345 44.1
PSO170G6219 Papaver somniferum HOM05D004574 ORTHO05D005612 6.2e-38 162.5 409 35.0
ECA236G2347 Erigeron canadensis HOM05D004574 ORTHO05D005612 1.8e-37 161.0 375 33.9
BcaC05g29707 Brassica carinata HOM05D004574 ORTHO05D005612 6.4e-35 152.5 345 39.4
Nn8g39728 Nelumbo nucifera HOM05D004574 ORTHO05D005612 6.4e-35 152.5 334 33.5
HanXRQChr05g0139651 Helianthus annuus HOM05D004574 ORTHO05D005612 7.1e-34 149.1 344 39.8
DCAR_014931 Daucus carota HOM05D004574 ORTHO05D005612 1.0e-32 145.2 344 41.6
ECA234G1322 Erigeron canadensis HOM05D004574 ORTHO05D005612 1.0e-32 145.2 359 39.8
TAR625G0795 Trochodendron aralioides HOM05D004574 ORTHO05D005612 6.6e-32 142.5 279 37.6
Hma1.2p1_2402F.1_g321400 Hydrangea macrophylla HOM05D004574 ORTHO05D005612 1.5e-31 141.4 307 32.6
Lsat_1_v5_gn_5_90461 Lactuca sativa HOM05D004574 ORTHO05D005612 5.8e-28 129.4 372 32.5
HanXRQChr12g0357011 Helianthus annuus HOM05D004574 ORTHO05D005612 2.9e-27 127.1 352 39.2
SHI03239 Sapria himalayana HOM05D004574 ORTHO05D005612 3.5e-25 120.2 361 29.4
CDE05G2637 Ceratophyllum demersum HOM05D004574 ORTHO05D005612 4.6e-25 119.8 366 40.2
Os08g0288500 Oryza sativa ssp. japonica HOM05D004574 ORTHO05D005612 1.5e-20 104.8 280 44.3
Zm00001eb028250 Zea mays HOM05D004574 ORTHO05D005612 9.9e-20 102.1 285 34.0
ATR0629G131 Amborella trichopoda HOM05D004574 ORTHO05D005612 4.6e-17 93.2 365 32.1
Phvul.003G175200 Phaseolus vulgaris HOM05D004574 ORTHO05D005612 6.0e-17 92.8 231 37.2
HPP92_005340 Vanilla planifolia HOM05D004574 ORTHO05D005612 9.6e-15 85.5 295 28.8
SEGI_00197 Sequoiadendron giganteum HOM05D000238 ORTHO05D001889 2.1e-14 84.3 424 26.2
SEGI_33529 Sequoiadendron giganteum HOM05D004574 ORTHO05D005612 2.1e-14 84.3 424 26.2
Eucgr.L03484 Eucalyptus grandis HOM05D004574 ORTHO05D005612 1.1e-13 82.0 43 93.0
unitig_0.g517 Utricularia gibba HOM05D004574 ORTHO05D005612 9.0e-13 79.0 310 33.9
Eucgr.C04073 Eucalyptus grandis HOM05D004574 ORTHO05D005612 6.4e-11 72.8 43 86.0
BolC1t05428H Brassica oleracea HOM05D004574 ORTHO05D005612 3.9e-08 63.5 117 37.6
Eucgr.L02096 Eucalyptus grandis HOM05D004574 ORTHO05D005612 1.6e-06 58.2 32 84.4
Eucgr.L03201 Eucalyptus grandis HOM05D004574 ORTHO05D005612 2.1e-06 57.8 60 56.7


User provided reference genes

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