Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.L01276 Eucalyptus grandis HOM05D000252 ORTHO05D006173 6.4e-35 150.2 77 100.0
Eucgr.E01120 Eucalyptus grandis HOM05D000252 ORTHO05D006173 3.2e-34 147.9 77 98.7
Eucgr.E01111 Eucalyptus grandis HOM05D000252 ORTHO05D006173 7.1e-34 146.7 77 97.4
Lj2C148T2 Lonicera japonica HOM05D000252 ORTHO05D006173 9.6e-23 109.8 71 74.6
CSS0014928 Camellia sinensis var. sinensis HOM05D000252 ORTHO05D006173 1.6e-22 109.0 71 73.2
vmacro00029 Vaccinium macrocarpon HOM05D000252 ORTHO05D006173 4.1e-21 104.4 72 70.8
Ciclev10001762m.g Citrus clementina HOM05D000252 ORTHO05D006173 2.0e-20 102.1 72 63.9
Oeu021515.1 Olea europaea HOM05D000252 ORTHO05D006173 2.6e-20 101.7 72 66.7
Actinidia25893 Actinidia chinensis HOM05D000252 ORTHO05D006173 3.4e-20 101.3 71 66.2
Rhsim02G0119800 Rhododendron simsii HOM05D000252 ORTHO05D006173 4.5e-20 100.9 71 69.0
Thecc.04G309700 Theobroma cacao HOM05D000252 ORTHO05D006173 4.5e-20 100.9 74 66.2
CiPaw.11G106500 Carya illinoinensis HOM05D000252 ORTHO05D006173 7.6e-20 100.1 72 63.9
Cfa010656 Carpinus fangiana HOM05D000252 ORTHO05D006173 1.0e-19 99.8 72 65.3
RcHm_v2.0_Chr2g0131741 Rosa chinensis HOM05D000252 ORTHO05D006173 5.0e-19 97.4 72 65.3
TAR629G1221 Trochodendron aralioides HOM05D000252 ORTHO05D006173 6.5e-19 97.1 71 66.2
FAN09G0108 Fragaria x ananassa HOM05D000252 ORTHO05D006173 8.5e-19 96.7 72 65.3
GSVIVG01035561001 Vitis vinifera HOM05D000252 ORTHO05D006173 8.5e-19 96.7 70 64.3
Cc09_g09590 Coffea canephora HOM05D000252 ORTHO05D006173 1.4e-18 95.9 72 59.7
FvH4_6g28040 Fragaria vesca HOM05D000252 ORTHO05D006173 1.4e-18 95.9 72 65.3
FAN14G4665 Fragaria x ananassa HOM05D000252 ORTHO05D006173 1.4e-18 95.9 72 65.3
Cpa.g.sc87.4 Carica papaya HOM05D000252 ORTHO05D006173 1.9e-18 95.5 64 73.4
CANSAT01G0545 Cannabis sativa HOM05D000252 ORTHO05D006173 2.5e-18 95.1 64 70.3
Prupe.8G264400 Prunus persica HOM05D000252 ORTHO05D006173 2.5e-18 95.1 73 63.0
Lsat_1_v5_gn_5_112420 Lactuca sativa HOM05D000252 ORTHO05D006173 5.5e-18 94.0 76 55.3
Manes.01G013300 Manihot esculenta HOM05D000252 ORTHO05D006173 5.5e-18 94.0 68 63.2
RcHm_v2.0_Chr5g0041951 Rosa chinensis HOM05D001077 ORTHO05D006173 5.5e-18 94.0 71 63.4
RcHm_v2.0_Chr6g0247031 Rosa chinensis HOM05D000252 ORTHO05D006173 5.5e-18 94.0 71 63.4
Atru.chr9.1817 Acer truncatum HOM05D000252 ORTHO05D006173 7.2e-18 93.6 70 62.9
Potri.001G453500 Populus trichocarpa HOM05D000252 ORTHO05D006173 7.2e-18 93.6 73 63.0
TAR622G0972 Trochodendron aralioides HOM05D000252 ORTHO05D006173 7.2e-18 93.6 71 62.0
PSO782G5386 Papaver somniferum HOM05D000252 ORTHO05D006173 1.2e-17 92.8 69 62.3
AUR62026982 Chenopodium quinoa HOM05D000252 ORTHO05D006173 1.6e-17 92.4 74 59.5
Thhalv10013899m.g Eutrema salsugineum HOM05D000252 ORTHO05D006173 2.7e-17 91.7 64 67.2
Gorai.005G070800 Gossypium raimondii HOM05D000252 ORTHO05D006173 3.6e-17 91.3 73 60.3
MSTRG.14758 Avicennia marina HOM05D000252 ORTHO05D006173 4.6e-17 90.9 62 67.7
AUR62006449 Chenopodium quinoa HOM05D000252 ORTHO05D006173 4.6e-17 90.9 74 58.1
AUR62029802 Chenopodium quinoa HOM05D000252 ORTHO05D006173 4.6e-17 90.9 62 66.1
PSO566G0118 Papaver somniferum HOM05D000252 ORTHO05D006173 4.6e-17 90.9 69 60.9
Gohir.D02G062900 Gossypium hirsutum HOM05D000252 ORTHO05D006173 6.1e-17 90.5 72 61.1
Sabra16G0306700 Salix brachista HOM05D000252 ORTHO05D006173 7.9e-17 90.1 64 67.2
COL.COLO4_34295 Corchorus olitorius HOM05D000252 ORTHO05D006173 1.0e-16 89.7 62 69.4
Migut.H01382 Erythranthe guttata HOM05D000252 ORTHO05D006173 1.0e-16 89.7 62 66.1
EL10Ac7g17138 Beta vulgaris HOM05D000252 ORTHO05D006173 1.3e-16 89.4 66 62.1
ECA246G4804 Erigeron canadensis HOM05D001361 ORTHO05D006173 1.3e-16 89.4 63 60.3
Nn2g15901 Nelumbo nucifera HOM05D000252 ORTHO05D006173 1.8e-16 89.0 71 56.3
Sed0023253 Sechium edule HOM05D000252 ORTHO05D006173 1.8e-16 89.0 71 62.0
AL6G13700 Arabidopsis lyrata HOM05D000252 ORTHO05D006173 3.0e-16 88.2 66 63.6
HanXRQChr06g0172631 Helianthus annuus HOM05D000252 ORTHO05D006173 3.9e-16 87.8 63 63.5
MBI04_g45215_MAGBIO Magnolia biondii HOM05D000252 ORTHO05D006173 3.9e-16 87.8 64 62.5
MD15G1141600 Malus domestica HOM05D000252 ORTHO05D006173 3.9e-16 87.8 73 57.5
RcHm_v2.0_Chr7g0229511 Rosa chinensis HOM05D000252 ORTHO05D006173 3.9e-16 87.8 72 61.1
Thhalv10013855m.g Eutrema salsugineum HOM05D000252 ORTHO05D006173 5.1e-16 87.4 64 64.1
Sc02g0006450 Simmondsia chinensis HOM05D000252 ORTHO05D006173 6.7e-16 87.0 72 59.7
BraA10t45249Z Brassica rapa HOM05D000252 ORTHO05D006173 8.7e-16 86.7 64 65.6
RcHm_v2.0_Chr7g0229671 Rosa chinensis HOM05D001214 ORTHO05D006173 8.7e-16 86.7 72 61.1
Sc02g0006460 Simmondsia chinensis HOM05D000252 ORTHO05D006173 8.7e-16 86.7 72 58.3
AT5G15940 Arabidopsis thaliana HOM05D000252 ORTHO05D006173 1.1e-15 86.3 64 62.5
CARHR197370 Cardamine hirsuta HOM05D000252 ORTHO05D006173 1.1e-15 86.3 67 59.7
TWI81G1050 Tripterygium wilfordii HOM05D000252 ORTHO05D006173 1.5e-15 85.9 73 56.2
Aqoxy2G02648 Aquilegia oxysepala HOM05D000252 ORTHO05D006173 1.9e-15 85.5 61 65.6
Sp6g28170 Schrenkiella parvula HOM05D000252 ORTHO05D006173 1.9e-15 85.5 76 55.3
Solyc09g010150.4 Solanum lycopersicum HOM05D000252 ORTHO05D006173 3.3e-15 84.7 75 53.3
Ah.08g209090 Amaranthus hybridus HOM05D000252 ORTHO05D006173 4.3e-15 84.3 62 64.5
ClCG01G007270 Citrullus lanatus HOM05D000252 ORTHO05D006173 4.3e-15 84.3 71 60.6
PGSC0003DMG400008940 Solanum tuberosum HOM05D000252 ORTHO05D006173 4.3e-15 84.3 68 57.4
CARHR209200 Cardamine hirsuta HOM05D000252 ORTHO05D006173 5.7e-15 84.0 66 59.1
Thhalv10007998m.g Eutrema salsugineum HOM05D000252 ORTHO05D006173 7.4e-15 83.6 64 62.5
FAN05G2628 Fragaria x ananassa HOM05D001214 ORTHO05D006173 7.4e-15 83.6 54 72.2
Sed0009717 Sechium edule HOM05D000252 ORTHO05D006173 7.4e-15 83.6 71 59.2
THA.LOC104816406 Tarenaya hassleriana HOM05D000252 ORTHO05D006173 7.4e-15 83.6 70 57.1
BcaNung02216 Brassica carinata HOM05D000252 ORTHO05D006173 9.7e-15 83.2 62 62.9
Sopen09g004890 Solanum pennellii HOM05D000252 ORTHO05D006173 9.7e-15 83.2 75 52.0
C09p72770 Brassica napus HOM05D000087 ORTHO05D006949 1.3e-14 82.8 64 64.1
BolC9t60015H Brassica oleracea HOM05D000087 ORTHO05D006949 1.3e-14 82.8 64 64.1
Carub.0006s0303 Capsella rubella HOM05D000252 ORTHO05D006173 1.3e-14 82.8 64 64.1
Carub.0006s1413 Capsella rubella HOM05D000252 ORTHO05D006173 1.3e-14 82.8 64 59.4
Peaxi162Scf00069g00511 Petunia axillaris HOM05D000252 ORTHO05D006173 1.3e-14 82.8 68 57.4
Sc02g0006480 Simmondsia chinensis HOM05D000252 ORTHO05D006173 1.3e-14 82.8 72 56.9
CsaV3_5G018710 Cucumis sativus L. HOM05D000252 ORTHO05D006173 1.6e-14 82.4 71 59.2
RcHm_v2.0_Chr7g0230161 Rosa chinensis HOM05D000252 ORTHO05D006173 1.6e-14 82.4 72 58.3
CAN.G397.84 Capsicum annuum HOM05D000252 ORTHO05D006173 2.2e-14 82.0 68 54.4
Aa31LG11G13660 Aethionema arabicum HOM05D000252 ORTHO05D006173 2.8e-14 81.6 64 59.4
BraA02t05302Z Brassica rapa HOM05D000252 ORTHO05D006173 3.7e-14 81.3 65 61.5
Nitab4.5_0000573g0180 Nicotiana tabacum HOM05D000252 ORTHO05D006173 3.7e-14 81.3 68 57.4
AT5G04070 Arabidopsis thaliana HOM05D000252 ORTHO05D006173 4.8e-14 80.9 66 62.1
BcaC03g18461 Brassica carinata HOM05D000252 ORTHO05D006173 6.3e-14 80.5 65 58.5
A10p32050 Brassica napus HOM05D000087 ORTHO05D006949 6.3e-14 80.5 64 62.5
Peaxi162Scf01205g00153 Petunia axillaris HOM05D000252 ORTHO05D006173 6.3e-14 80.5 68 55.9
BcaC06g32112 Brassica carinata HOM05D000252 ORTHO05D006173 8.2e-14 80.1 64 60.9
BcaNung02217 Brassica carinata HOM05D000252 ORTHO05D006173 8.2e-14 80.1 65 61.5
ATR0824G073 Amborella trichopoda HOM05D000252 ORTHO05D006173 1.1e-13 79.7 62 59.7
FAN02G2190 Fragaria x ananassa HOM05D000479 ORTHO05D017027 1.4e-13 79.3 69 55.1
Os09g0346600 Oryza sativa ssp. japonica HOM05D000252 ORTHO05D006173 1.4e-13 79.3 73 53.4
A02p03310 Brassica napus HOM05D005209 ORTHO05D006188 1.8e-13 79.0 65 58.5
C02p08070 Brassica napus HOM05D005209 ORTHO05D006188 1.8e-13 79.0 65 58.5
BolC2t06729H Brassica oleracea HOM05D005209 ORTHO05D006188 1.8e-13 79.0 65 58.5
FAN05G1823 Fragaria x ananassa HOM05D000479 ORTHO05D017027 2.4e-13 78.6 69 56.5
QL07p028735 Quercus lobata HOM05D000252 ORTHO05D006173 2.4e-13 78.6 106 43.4
Medtr3g009190 Medicago truncatula HOM05D000252 ORTHO05D006173 3.1e-13 78.2 57 66.7
Medtr6g453040 Medicago truncatula HOM05D000252 ORTHO05D006173 3.1e-13 78.2 57 66.7
QL93p2012_0022 Quercus lobata HOM05D000252 ORTHO05D006173 4.1e-13 77.8 63 57.1
AL6G26820 Arabidopsis lyrata HOM05D000252 ORTHO05D006173 5.3e-13 77.4 60 60.0
Lj1g0001797 Lotus japonicus HOM05D000252 ORTHO05D006173 5.3e-13 77.4 57 63.2
Lalb_Chr23g0271541 Lupinus albus HOM05D000252 ORTHO05D006173 9.1e-13 76.6 57 61.4
HPP92_005571 Vanilla planifolia HOM05D000252 ORTHO05D006173 9.1e-13 76.6 58 62.1
Zm00001eb310490 Zea mays HOM05D000252 ORTHO05D006173 2.0e-12 75.5 62 61.3
VMungo1309G0630 Vigna mungo HOM05D000252 ORTHO05D006173 3.4e-12 74.7 74 50.0
arahy.Tifrunner.gnm1.ann1.32U02B Arachis hypogaea HOM05D000252 ORTHO05D006173 4.5e-12 74.3 59 61.0
arahy.Tifrunner.gnm1.ann1.VK1FTJ Arachis hypogaea HOM05D000252 ORTHO05D006173 4.5e-12 74.3 59 61.0
arahy.Tifrunner.gnm1.ann1.6GL1RL Arachis hypogaea HOM05D000252 ORTHO05D006173 7.7e-12 73.6 59 61.0
Glyma.04G237500 Glycine max HOM05D000252 ORTHO05D006173 1.0e-11 73.2 57 61.4
Sp6g38670 Schrenkiella parvula HOM05D000252 ORTHO05D006173 1.3e-11 72.8 64 57.8
Glyma.06G126500 Glycine max HOM05D000252 ORTHO05D006173 1.7e-11 72.4 57 61.4
Phvul.009G054600 Phaseolus vulgaris HOM05D000252 ORTHO05D006173 2.9e-11 71.6 57 56.1
unitig_61.g26060 Utricularia gibba HOM05D000252 ORTHO05D006173 3.8e-11 71.2 64 54.7
Ca_16687_v3 Cicer arietinum L. HOM05D000252 ORTHO05D006173 8.5e-11 70.1 57 59.6
Medtr3g091070 Medicago truncatula HOM05D000252 ORTHO05D006173 1.1e-10 69.7 57 59.6
Mapoly0004s0285 Marchantia polymorpha HOM05D000252 ORTHO05D006173 7.2e-10 67.0 54 55.6
Aa31LG1G21250 Aethionema arabicum HOM05D000252 ORTHO05D006173 9.4e-10 66.6 60 56.7
AagrBONN_evm.TU.Sc2ySwM_228.404 Anthoceros agrestis HOM05D000252 ORTHO05D006173 7.9e-09 63.5 56 57.1
SEGI_02143 Sequoiadendron giganteum HOM05D000252 ORTHO05D006173 1.0e-08 63.2 57 54.4
SGA_v2.0_scaffold51G18622 Striga asiatica HOM05D000252 ORTHO05D006173 3.9e-08 61.2 40 65.0
CBR_g24314 Chara braunii HOM05D000252 ORTHO05D006173 5.1e-08 60.8 60 48.3
SMO259G0014 Selaginella moellendorffii HOM05D000252 ORTHO05D006173 8.8e-08 60.1 74 43.2
Pp3c26_3200 Physcomitrium patens HOM05D000252 ORTHO05D006173 1.3e-06 56.2 65 43.1


User provided reference genes

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