Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.L01273 Eucalyptus grandis HOM05D007072 ORTHO05D008841 4.3e-116 421.4 221 100.0
Eucgr.L02492 Eucalyptus grandis HOM05D007072 ORTHO05D008841 1.4e-114 416.4 221 98.2
Dinv13993 Davidia involucrata HOM05D007072 ORTHO05D008841 5.7e-68 261.5 209 65.6
Haze_00902 Corylus avellana HOM05D007072 ORTHO05D008841 1.3e-67 260.4 207 66.7
Haze_03895 Corylus avellana HOM05D007072 ORTHO05D008841 1.3e-67 260.4 212 66.5
GSVIVG01017974001 Vitis vinifera HOM05D007072 ORTHO05D008841 4.8e-67 258.5 209 66.5
PGR142G1968 Punica granatum HOM05D007072 ORTHO05D008841 1.2e-65 253.8 212 65.1
QL06p002505 Quercus lobata HOM05D007072 ORTHO05D008841 2.6e-65 252.7 208 66.8
Thecc.04G231900 Theobroma cacao HOM05D007072 ORTHO05D008841 1.0e-64 250.8 206 68.4
Prupe.1G013400 Prunus persica HOM05D007072 ORTHO05D008841 3.8e-64 248.8 209 65.6
TAR636G0958 Trochodendron aralioides HOM05D007072 ORTHO05D008841 3.8e-64 248.8 204 67.2
CSS0014065 Camellia sinensis var. sinensis HOM05D007072 ORTHO05D008841 1.9e-63 246.5 214 64.0
MD16G1193700 Malus domestica HOM05D007072 ORTHO05D008841 4.2e-63 245.4 186 69.4
Actinidia40146 Actinidia chinensis HOM05D007072 ORTHO05D008841 1.2e-62 243.8 184 69.0
Duzib212G0309 Durio zibethinus HOM05D007072 ORTHO05D008841 1.2e-62 243.8 209 66.5
CiPaw.01G165800 Carya illinoinensis HOM05D007072 ORTHO05D008841 2.7e-62 242.7 209 64.6
COL.COLO4_04736 Corchorus olitorius HOM05D007072 ORTHO05D008841 3.6e-62 242.3 210 66.2
Ca_10901_v3 Cicer arietinum L. HOM05D007072 ORTHO05D008841 2.3e-61 239.6 209 64.1
Ciclev10005922m.g Citrus clementina HOM05D007072 ORTHO05D008841 3.0e-61 239.2 183 69.4
Glyma.07G018200 Glycine max HOM05D007072 ORTHO05D008841 3.0e-61 239.2 212 65.1
TPR.G5523 Trifolium pratense HOM05D007072 ORTHO05D008841 5.2e-61 238.4 211 64.9
VMungo0720G2696 Vigna mungo HOM05D007072 ORTHO05D008841 5.2e-61 238.4 212 64.2
Lj5g0010864 Lotus japonicus HOM05D007072 ORTHO05D008841 8.8e-61 237.7 207 63.3
ClCG06G006220 Citrullus lanatus HOM05D007072 ORTHO05D008841 2.6e-60 236.1 207 62.3
Hma1.2p1_1344F.1_g277130 Hydrangea macrophylla HOM05D007072 ORTHO05D008841 3.3e-60 235.7 207 61.4
Atru.ctg752_3.79 Acer truncatum HOM05D007072 ORTHO05D008841 4.4e-60 235.3 198 64.6
Phvul.007G057300 Phaseolus vulgaris HOM05D007072 ORTHO05D008841 1.3e-59 233.8 212 64.2
Aqoxy5G00468 Aquilegia oxysepala HOM05D007072 ORTHO05D008841 3.7e-59 232.3 204 60.8
Glyma.08G203200 Glycine max HOM05D007072 ORTHO05D008841 4.8e-59 231.9 212 62.7
arahy.Tifrunner.gnm1.ann1.KKZ0LN Arachis hypogaea HOM05D007072 ORTHO05D008841 8.2e-59 231.1 213 63.4
Rhsim04G0202300 Rhododendron simsii HOM05D007072 ORTHO05D008841 8.2e-59 231.1 196 63.3
arahy.Tifrunner.gnm1.ann1.0J3LZT Arachis hypogaea HOM05D007072 ORTHO05D008841 1.1e-58 230.7 213 62.9
Cc03_g03760 Coffea canephora HOM05D007072 ORTHO05D008841 1.1e-58 230.7 171 70.8
Gohir.A10G168700 Gossypium hirsutum HOM05D007072 ORTHO05D008841 1.1e-58 230.7 221 62.4
RcHm_v2.0_Chr4g0416241 Rosa chinensis HOM05D007072 ORTHO05D008841 1.4e-58 230.3 211 62.6
Gorai.011G195700 Gossypium raimondii HOM05D007072 ORTHO05D008841 2.4e-58 229.6 221 62.0
DCAR_030636 Daucus carota HOM05D007072 ORTHO05D008841 3.1e-58 229.2 184 63.6
arahy.Tifrunner.gnm1.ann1.8ZA7N6 Arachis hypogaea HOM05D007072 ORTHO05D008841 4.1e-58 228.8 213 62.9
CsaV3_7G022520 Cucumis sativus L. HOM05D007072 ORTHO05D008841 9.1e-58 227.6 209 61.7
Gohir.D10G174900 Gossypium hirsutum HOM05D007072 ORTHO05D008841 9.1e-58 227.6 221 62.0
Medtr1g103810 Medicago truncatula HOM05D007072 ORTHO05D008841 1.6e-57 226.9 209 64.1
Psat6g207520 Pisum sativum HOM05D007072 ORTHO05D008841 1.6e-57 226.9 209 61.2
CANSAT78G1446 Cannabis sativa HOM05D007072 ORTHO05D008841 1.0e-56 224.2 225 57.3
TWI09G0189 Tripterygium wilfordii HOM05D007072 ORTHO05D008841 1.0e-56 224.2 166 70.5
CAN.G490.4 Capsicum annuum HOM05D007072 ORTHO05D008841 2.2e-56 223.0 201 62.7
Manes.03G178700 Manihot esculenta HOM05D007072 ORTHO05D008841 3.8e-56 222.2 211 61.1
Sed0002009 Sechium edule HOM05D007072 ORTHO05D008841 3.8e-56 222.2 185 67.0
FvH4_4g15520 Fragaria vesca HOM05D007072 ORTHO05D008841 5.0e-56 221.9 211 62.6
FAN12G0870 Fragaria x ananassa HOM05D007072 ORTHO05D008841 5.0e-56 221.9 211 62.6
PGSC0003DMG400030078 Solanum tuberosum HOM05D007072 ORTHO05D008841 5.0e-56 221.9 207 60.9
Nn4g26321 Nelumbo nucifera HOM05D007072 ORTHO05D008841 8.5e-56 221.1 214 60.3
MELO3C012648.2 Cucumis melo HOM05D007072 ORTHO05D008841 1.9e-55 219.9 207 60.4
Solyc09g076030.4 Solanum lycopersicum HOM05D007072 ORTHO05D008841 1.9e-55 219.9 207 60.9
Sopen09g030860 Solanum pennellii HOM05D007072 ORTHO05D008841 2.5e-55 219.5 201 62.7
FAN07G0953 Fragaria x ananassa HOM05D007072 ORTHO05D008841 5.5e-55 218.4 211 61.6
ECA240G2950 Erigeron canadensis HOM05D007072 ORTHO05D008841 7.2e-55 218.0 205 61.5
Lj3A735T48 Lonicera japonica HOM05D007072 ORTHO05D008841 9.4e-55 217.6 221 58.4
Sc19g0004160 Simmondsia chinensis HOM05D007072 ORTHO05D008841 2.7e-54 216.1 187 63.1
THA.LOC104800963 Tarenaya hassleriana HOM05D007072 ORTHO05D008841 2.7e-54 216.1 212 59.0
Hund12130 Selenicereus undatus HOM05D007072 ORTHO05D008841 3.6e-54 215.7 180 65.6
Aa31LG1G19230 Aethionema arabicum HOM05D007072 ORTHO05D008841 4.7e-54 215.3 215 55.8
arahy.Tifrunner.gnm1.ann1.DZ7G8Z Arachis hypogaea HOM05D007072 ORTHO05D008841 4.7e-54 215.3 205 61.0
Thhalv10008840m.g Eutrema salsugineum HOM05D007072 ORTHO05D008841 6.1e-54 214.9 213 56.8
Potri.008G152800 Populus trichocarpa HOM05D007072 ORTHO05D008841 1.4e-53 213.8 209 58.4
Migut.G00337 Erythranthe guttata HOM05D007072 ORTHO05D008841 2.3e-53 213.0 211 60.2
Peaxi162Scf00092g01012 Petunia axillaris HOM05D007072 ORTHO05D008841 3.0e-53 212.6 183 65.0
Sabra08G0116400 Salix brachista HOM05D007072 ORTHO05D008841 3.0e-53 212.6 237 52.3
BolC5t29149H Brassica oleracea HOM05D007072 ORTHO05D008841 6.8e-53 211.5 186 63.4
HanXRQChr03g0062521 Helianthus annuus HOM05D007072 ORTHO05D008841 6.8e-53 211.5 186 63.4
Oeu031231.1 Olea europaea HOM05D007072 ORTHO05D008841 6.8e-53 211.5 171 67.8
C05p03740 Brassica napus HOM05D007072 ORTHO05D008841 8.8e-53 211.1 186 63.4
BraA10t42680Z Brassica rapa HOM05D007072 ORTHO05D008841 1.2e-52 210.7 172 65.1
SalBow2G0955 Salvia bowleyana HOM05D007072 ORTHO05D008841 1.5e-52 210.3 203 59.1
Sp1g04270 Schrenkiella parvula HOM05D007072 ORTHO05D008841 2.6e-52 209.5 168 66.1
BcaB02g06864 Brassica carinata HOM05D007072 ORTHO05D008841 4.4e-52 208.8 172 66.9
Nitab4.5_0000043g0120 Nicotiana tabacum HOM05D007072 ORTHO05D008841 7.5e-52 208.0 181 64.6
A10p04090 Brassica napus HOM05D007072 ORTHO05D008841 9.8e-52 207.6 172 64.5
PSO732G0121 Papaver somniferum HOM05D007072 ORTHO05D008841 1.3e-51 207.2 191 59.2
FAN22G0737 Fragaria x ananassa HOM05D007072 ORTHO05D008841 3.7e-51 205.7 156 69.9
AT1G05385 Arabidopsis thaliana HOM05D007072 ORTHO05D008841 8.3e-51 204.5 169 66.3
PSO675G2050 Papaver somniferum HOM05D007072 ORTHO05D008841 8.3e-51 204.5 188 60.1
ATR0733G024 Amborella trichopoda HOM05D007072 ORTHO05D008841 1.4e-50 203.8 176 65.3
AL1G15220 Arabidopsis lyrata HOM05D007072 ORTHO05D008841 7.0e-50 201.4 167 64.7
EL10Ac2g03959 Beta vulgaris HOM05D007072 ORTHO05D008841 9.1e-50 201.1 212 56.1
EL10Ac4g08230 Beta vulgaris HOM05D007072 ORTHO05D008841 9.1e-50 201.1 193 59.1
CARHR004900 Cardamine hirsuta HOM05D007072 ORTHO05D008841 9.1e-50 201.1 212 54.2
Carub.0001s0473 Capsella rubella HOM05D007072 ORTHO05D008841 1.6e-49 200.3 167 64.7
Rhsim04G0202400 Rhododendron simsii HOM05D007072 ORTHO05D008841 1.3e-48 197.2 137 73.0
Lalb_Chr02g0140581 Lupinus albus HOM05D007072 ORTHO05D008841 1.7e-48 196.8 144 72.9
Ah.04g154560 Amaranthus hybridus HOM05D007072 ORTHO05D008841 2.2e-48 196.4 140 74.3
AUR62034750 Chenopodium quinoa HOM05D007072 ORTHO05D008841 3.8e-48 195.7 175 61.7
Lsat_1_v5_gn_7_66201 Lactuca sativa HOM05D007072 ORTHO05D008841 6.5e-48 194.9 185 58.9
unitig_32.g10817 Utricularia gibba HOM05D005563 ORTHO05D006667 6.5e-48 194.9 173 62.4
SGA_v2.0_scaffold124G33503 Striga asiatica HOM05D007072 ORTHO05D008841 1.6e-46 190.3 165 63.6
AUR62033624 Chenopodium quinoa HOM05D007072 ORTHO05D008841 1.4e-45 187.2 134 71.6
HPP92_001955 Vanilla planifolia HOM05D007072 ORTHO05D008841 1.4e-45 187.2 192 55.7
Actinidia27161 Actinidia chinensis HOM05D007072 ORTHO05D008841 4.0e-45 185.7 191 53.9
Zm00001eb214960 Zea mays HOM05D007072 ORTHO05D008841 1.4e-42 177.2 143 67.8
Os03g0747700 Oryza sativa ssp. japonica HOM05D007072 ORTHO05D008841 2.7e-41 172.9 128 72.7
Pp3c8_18010 Physcomitrium patens HOM05D007072 ORTHO05D008841 4.0e-37 159.1 140 59.3
Mapoly0045s0091 Marchantia polymorpha HOM05D007072 ORTHO05D008841 3.5e-33 146.0 142 54.9
CDE10G0502 Ceratophyllum demersum HOM05D007072 ORTHO05D008841 2.3e-32 143.3 101 73.3
SMO347G0486 Selaginella moellendorffii HOM05D007072 ORTHO05D008841 2.5e-31 139.8 134 54.5
Nitab4.5_0001560g0030 Nicotiana tabacum HOM05D007072 ORTHO05D008841 3.3e-31 139.4 136 58.1
CBR_g41625 Chara braunii HOM05D007072 ORTHO05D008841 8.9e-29 131.3 142 47.2
SEGI_01006 Sequoiadendron giganteum HOM05D007072 ORTHO05D008841 2.6e-28 129.8 124 55.6
RcHm_v2.0_Chr4g0430981 Rosa chinensis HOM05D007072 ORTHO05D008841 1.3e-27 127.5 104 63.5
MBI05_g43294_MAGBIO Magnolia biondii HOM05D007072 ORTHO05D008841 8.3e-19 98.2 70 72.9
AagrBONN_evm.TU.Sc2ySwM_228.1232 Anthoceros agrestis HOM05D007072 ORTHO05D008841 4.6e-17 92.4 119 46.2
ATR0741G001 Amborella trichopoda HOM05D007072 ORTHO05D008841 8.1e-06 55.1 54 59.3


User provided reference genes

Program Settings