Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.L01259 Eucalyptus grandis HOM05D007073 ORTHO05D008855 3.4e-55 218.0 105 100.0
Eucgr.H01040 Eucalyptus grandis HOM05D007073 ORTHO05D008855 8.8e-19 97.1 52 92.3
Eucgr.L01253 Eucalyptus grandis HOM05D007073 ORTHO05D008855 1.2e-18 96.7 52 90.4
Atru.chr13.338 Acer truncatum HOM05D007073 ORTHO05D008855 1.7e-17 92.8 52 86.5
Psat7g072280 Pisum sativum HOM05D007073 ORTHO05D008855 2.2e-17 92.4 53 83.0
PGR031G0624 Punica granatum HOM05D007073 ORTHO05D008855 2.8e-17 92.0 54 85.2
Peaxi162Scf00287g01620 Petunia axillaris HOM05D007073 ORTHO05D008855 4.8e-17 91.3 52 84.6
Peaxi162Scf01591g00005 Petunia axillaris HOM05D007073 ORTHO05D008855 4.8e-17 91.3 52 84.6
GSVIVG01009840001 Vitis vinifera HOM05D007073 ORTHO05D008855 6.3e-17 90.9 52 84.6
arahy.Tifrunner.gnm1.ann1.F1G2D9 Arachis hypogaea HOM05D007073 ORTHO05D008855 8.3e-17 90.5 52 82.7
Nn5g29254 Nelumbo nucifera HOM05D007073 ORTHO05D008855 8.3e-17 90.5 52 84.6
TPR.G24371 Trifolium pratense HOM05D007073 ORTHO05D008855 8.3e-17 90.5 53 83.0
Medtr8g085700 Medicago truncatula HOM05D007073 ORTHO05D008855 1.4e-16 89.7 53 81.1
Aqoxy6G02335_Aqoxy6G02336 Aquilegia oxysepala HOM05D000558 ORTHO05D001857 1.8e-16 89.4 52 80.8
arahy.Tifrunner.gnm1.ann1.JR36LC Arachis hypogaea HOM05D007073 ORTHO05D008855 1.8e-16 89.4 52 80.8
CANSAT25G0010 Cannabis sativa HOM05D007073 ORTHO05D008855 1.8e-16 89.4 52 78.8
Lj4g0003370 Lotus japonicus HOM05D007073 ORTHO05D008855 1.8e-16 89.4 49 83.7
Potri.005G235800 Populus trichocarpa HOM05D007073 ORTHO05D008855 1.8e-16 89.4 50 86.0
Solyc04g081160.3 Solanum lycopersicum HOM05D007073 ORTHO05D008855 1.8e-16 89.4 52 84.6
Sopen04g034780 Solanum pennellii HOM05D007073 ORTHO05D008855 1.8e-16 89.4 52 84.6
PGSC0003DMG400003718 Solanum tuberosum HOM05D007073 ORTHO05D008855 1.8e-16 89.4 52 84.6
arahy.Tifrunner.gnm1.ann1.0LW32C Arachis hypogaea HOM05D007073 ORTHO05D008855 2.4e-16 89.0 49 85.7
Cfa013916 Carpinus fangiana HOM05D007073 ORTHO05D008855 2.4e-16 89.0 52 80.8
AUR62014408 Chenopodium quinoa HOM05D007073 ORTHO05D008855 2.4e-16 89.0 52 80.8
Haze_22602 Corylus avellana HOM05D000624 ORTHO05D000495 2.4e-16 89.0 52 80.8
Sabra05G0182000 Salix brachista HOM05D007073 ORTHO05D008855 3.1e-16 88.6 50 84.0
CSS0049768 Camellia sinensis var. sinensis HOM05D007073 ORTHO05D008855 5.4e-16 87.8 52 78.8
Nitab4.5_0005185g0010 Nicotiana tabacum HOM05D007073 ORTHO05D008855 5.4e-16 87.8 52 78.8
TAR628G0116 Trochodendron aralioides HOM05D007073 ORTHO05D008855 5.4e-16 87.8 52 82.7
Oeu054729.1 Olea europaea HOM05D007073 ORTHO05D008855 7.0e-16 87.4 53 79.2
Ciclev10002853m.g Citrus clementina HOM05D007073 ORTHO05D008855 9.1e-16 87.0 54 77.8
Glyma.08G113800 Glycine max HOM05D007073 ORTHO05D008855 9.1e-16 87.0 49 81.6
QL02p010904 Quercus lobata HOM05D007073 ORTHO05D008855 9.1e-16 87.0 52 80.8
AUR62019145 Chenopodium quinoa HOM05D007073 ORTHO05D008855 1.2e-15 86.7 52 78.8
vmacro21707 Vaccinium macrocarpon HOM05D007073 ORTHO05D008855 1.2e-15 86.7 52 80.8
COL.COLO4_26179 Corchorus olitorius HOM05D007073 ORTHO05D008855 1.6e-15 86.3 52 78.8
Gohir.A01G112900 Gossypium hirsutum HOM05D007073 ORTHO05D008855 1.6e-15 86.3 50 82.0
Gohir.D01G101000 Gossypium hirsutum HOM05D007073 ORTHO05D008855 1.6e-15 86.3 50 82.0
HanXRQChr02g0044001 Helianthus annuus HOM05D007073 ORTHO05D008855 1.6e-15 86.3 54 77.8
RcHm_v2.0_Chr6g0272121 Rosa chinensis HOM05D007073 ORTHO05D008855 1.6e-15 86.3 54 74.1
RcHm_v2.0_Chr6g0302381 Rosa chinensis HOM05D007073 ORTHO05D008855 1.6e-15 86.3 54 74.1
CAN.G1271.5 Capsicum annuum HOM05D007073 ORTHO05D008855 2.0e-15 85.9 52 82.7
Migut.C00802 Erythranthe guttata HOM05D007073 ORTHO05D008855 2.0e-15 85.9 53 75.5
TWI56G0686 Tripterygium wilfordii HOM05D007073 ORTHO05D008855 2.0e-15 85.9 52 78.8
Ca_17949_v3 Cicer arietinum L. HOM05D007073 ORTHO05D008855 2.7e-15 85.5 49 81.6
ECA247G1834 Erigeron canadensis HOM05D007073 ORTHO05D008855 2.7e-15 85.5 54 74.1
Prupe.1G369500 Prunus persica HOM05D007073 ORTHO05D008855 2.7e-15 85.5 54 74.1
VMungo0251G2135 Vigna mungo HOM05D007073 ORTHO05D008855 2.7e-15 85.5 49 81.6
Zm00001eb001980 Zea mays HOM05D007073 ORTHO05D008855 2.7e-15 85.5 49 83.7
CiPaw.07G153100 Carya illinoinensis HOM05D007073 ORTHO05D008855 4.5e-15 84.7 52 76.9
Cc04_g14740 Coffea canephora HOM05D007073 ORTHO05D008855 4.5e-15 84.7 52 76.9
Dinv31819 Davidia involucrata HOM05D007073 ORTHO05D008855 4.5e-15 84.7 52 76.9
FvH4_5g30190 Fragaria vesca HOM05D007073 ORTHO05D008855 4.5e-15 84.7 54 72.2
FAN13G2867 Fragaria x ananassa HOM05D007073 ORTHO05D008855 4.5e-15 84.7 54 72.2
FAN18G2174 Fragaria x ananassa HOM05D007403 ORTHO05D009306 4.5e-15 84.7 54 72.2
PSO675G5408 Papaver somniferum HOM05D007073 ORTHO05D008855 4.5e-15 84.7 54 75.9
unitig_32.g11146 Utricularia gibba HOM05D007073 ORTHO05D008855 4.5e-15 84.7 54 75.9
EL10Ac1g00450 Beta vulgaris HOM05D007073 ORTHO05D008855 5.9e-15 84.3 52 76.9
Glyma.05G155900 Glycine max HOM05D007073 ORTHO05D008855 5.9e-15 84.3 49 79.6
Hma1.2p1_0773F.1_g216240 Hydrangea macrophylla HOM05D007073 ORTHO05D008855 5.9e-15 84.3 52 78.8
PSO541G6379 Papaver somniferum HOM05D007073 ORTHO05D008855 5.9e-15 84.3 54 74.1
Actinidia37317 Actinidia chinensis HOM05D007073 ORTHO05D008855 7.7e-15 84.0 52 76.9
MD08G1016500 Malus domestica HOM05D007073 ORTHO05D008855 7.7e-15 84.0 54 72.2
Rhsim06G0025500 Rhododendron simsii HOM05D000624 ORTHO05D000495 7.7e-15 84.0 52 76.9
RhsimUnG0148500 Rhododendron simsii HOM05D007073 ORTHO05D008855 7.7e-15 84.0 52 76.9
Sp1g26740 Schrenkiella parvula HOM05D007073 ORTHO05D008855 7.7e-15 84.0 52 78.8
Zm00001eb403590 Zea mays HOM05D007073 ORTHO05D008855 7.7e-15 84.0 50 80.0
Duzib093G1738 Durio zibethinus HOM05D007073 ORTHO05D008855 1.0e-14 83.6 50 74.0
Os03g0127000 Oryza sativa ssp. japonica HOM05D007073 ORTHO05D008855 1.0e-14 83.6 50 78.0
SGA_v2.0_scaffold92G28274 Striga asiatica HOM05D007073 ORTHO05D008855 1.0e-14 83.6 53 75.5
THA.LOC104810648 Tarenaya hassleriana HOM05D007073 ORTHO05D008855 1.0e-14 83.6 53 75.5
Aa31LG6G9870 Aethionema arabicum HOM05D007073 ORTHO05D008855 1.7e-14 82.8 52 78.8
Lalb_Chr12g0205331 Lupinus albus HOM05D007073 ORTHO05D008855 1.7e-14 82.8 53 71.7
HPP92_025607 Vanilla planifolia HOM05D007073 ORTHO05D008855 1.7e-14 82.8 52 76.9
SalBow7G2056 Salvia bowleyana HOM05D007073 ORTHO05D008855 2.2e-14 82.4 53 71.7
Thecc.08G038900 Theobroma cacao HOM05D007073 ORTHO05D008855 2.2e-14 82.4 52 75.0
Lsat_1_v5_gn_1_16141 Lactuca sativa HOM05D007073 ORTHO05D008855 2.9e-14 82.0 50 78.0
CANSAT11G0546 Cannabis sativa HOM05D007073 ORTHO05D008855 3.8e-14 81.6 52 75.0
Thhalv10009135m.g Eutrema salsugineum HOM05D007073 ORTHO05D008855 3.8e-14 81.6 52 76.9
CDE08G0828 Ceratophyllum demersum HOM05D007073 ORTHO05D008855 5.0e-14 81.3 50 74.0
Cc02_g29940 Coffea canephora HOM05D007073 ORTHO05D008855 5.0e-14 81.3 52 73.1
Phvul.002G236200 Phaseolus vulgaris HOM05D007073 ORTHO05D008855 8.5e-14 80.5 49 77.6
A09p35370 Brassica napus HOM05D007073 ORTHO05D008855 1.1e-13 80.1 52 75.0
ClCG08G014440 Citrullus lanatus HOM05D007073 ORTHO05D008855 1.1e-13 80.1 50 78.0
MD15G1015600 Malus domestica HOM05D007073 ORTHO05D008855 1.1e-13 80.1 54 68.5
Sed0011824 Sechium edule HOM05D007073 ORTHO05D008855 1.1e-13 80.1 50 78.0
MSTRG.1215 Avicennia marina HOM05D007073 ORTHO05D008855 1.9e-13 79.3 53 71.7
BcaB07g32745 Brassica carinata HOM05D007073 ORTHO05D008855 1.9e-13 79.3 52 73.1
BcaC05g27117 Brassica carinata HOM05D007073 ORTHO05D008855 1.9e-13 79.3 52 73.1
BcaC05g27119 Brassica carinata HOM05D007073 ORTHO05D008855 1.9e-13 79.3 52 73.1
C05p29960 Brassica napus HOM05D007073 ORTHO05D008855 1.9e-13 79.3 52 73.1
C05p29970 Brassica napus HOM05D007073 ORTHO05D008855 1.9e-13 79.3 52 73.1
BolC5t31732H Brassica oleracea HOM05D007073 ORTHO05D008855 1.9e-13 79.3 52 73.1
BolC5t31736H Brassica oleracea HOM05D007073 ORTHO05D008855 1.9e-13 79.3 52 73.1
CANSAT11G2499 Cannabis sativa HOM05D007073 ORTHO05D008855 1.9e-13 79.3 52 71.2
SGA_v2.0_scaffold92G28275 Striga asiatica HOM05D007073 ORTHO05D008855 1.9e-13 79.3 53 73.6
AT1G30845 Arabidopsis thaliana HOM05D007073 ORTHO05D008855 3.2e-13 78.6 52 73.1
Carub.0001s2918 Capsella rubella HOM05D007073 ORTHO05D008855 3.2e-13 78.6 52 73.1
CARHR030330 Cardamine hirsuta HOM05D007073 ORTHO05D008855 3.2e-13 78.6 52 73.1
MELO3C010995.2 Cucumis melo HOM05D007073 ORTHO05D008855 3.2e-13 78.6 48 79.2
AL1G45120 Arabidopsis lyrata HOM05D007073 ORTHO05D008855 5.5e-13 77.8 50 74.0
Manes.18G016450 Manihot esculenta HOM05D007073 ORTHO05D008855 7.2e-13 77.4 53 67.9
C05p30020 Brassica napus HOM05D007073 ORTHO05D008855 1.2e-12 76.6 57 63.2
CsaV3_2G029360 Cucumis sativus L. HOM05D007073 ORTHO05D008855 1.2e-12 76.6 50 76.0
FAN04G0335 Fragaria x ananassa HOM05D007403 ORTHO05D009306 1.2e-12 76.6 44 81.8
ATR0945G003 Amborella trichopoda HOM05D007073 ORTHO05D008855 3.6e-12 75.1 55 65.5
Sc26g0003150 Simmondsia chinensis HOM05D007073 ORTHO05D008855 3.6e-12 75.1 44 79.5
SEGI_10735 Sequoiadendron giganteum HOM05D007073 ORTHO05D008855 8.0e-12 73.9 50 74.0
Eucgr.H01037 Eucalyptus grandis HOM05D007073 ORTHO05D008855 3.0e-11 72.0 44 79.5
MD13G1087600 Malus domestica HOM05D007073 ORTHO05D008855 1.1e-08 63.5 37 78.4
Actinidia04603 Actinidia chinensis HOM05D007073 ORTHO05D008855 1.8e-08 62.8 50 68.0
Actinidia26593 Actinidia chinensis HOM05D007073 ORTHO05D008855 1.8e-08 62.8 50 68.0
Mapoly0121s0038 Marchantia polymorpha HOM05D007073 ORTHO05D008855 4.1e-08 61.6 47 66.0
BolC5t31739H Brassica oleracea HOM05D007073 ORTHO05D008855 1.6e-07 59.7 37 73.0
Pp3c8_14860 Physcomitrium patens HOM05D007073 ORTHO05D008855 5.0e-06 54.7 47 63.8


User provided reference genes

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