Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.L01257 Eucalyptus grandis HOM05D003281 ORTHO05D004128 1.8e-81 305.8 150 100.0
Eucgr.A00708 Eucalyptus grandis HOM05D003281 ORTHO05D004128 2.7e-53 212.2 142 78.2
Eucgr.A00733 Eucalyptus grandis HOM05D003281 ORTHO05D004128 3.5e-53 211.8 142 78.2
PGR004G1969 Punica granatum HOM05D003281 ORTHO05D004128 1.7e-52 209.5 142 76.1
RcHm_v2.0_Chr2g0124681 Rosa chinensis HOM05D003281 ORTHO05D004128 8.6e-52 207.2 144 75.0
Duzib132G1085 Durio zibethinus HOM05D003281 ORTHO05D004128 1.1e-51 206.8 165 69.1
FvH4_1g24580 Fragaria vesca HOM05D003281 ORTHO05D004128 1.5e-51 206.5 142 76.1
FvH4_7g04800 Fragaria vesca HOM05D003281 ORTHO05D004128 1.5e-51 206.5 142 76.1
FAN26G3221 Fragaria x ananassa HOM05D003281 ORTHO05D004128 1.5e-51 206.5 142 76.1
Hund10057 Selenicereus undatus HOM05D003281 ORTHO05D004128 1.5e-51 206.5 142 75.4
MELO3C002406.2 Cucumis melo HOM05D003281 ORTHO05D004128 1.9e-51 206.1 165 69.1
FAN20G2649 Fragaria x ananassa HOM05D003281 ORTHO05D004128 1.9e-51 206.1 142 75.4
FAN23G2047 Fragaria x ananassa HOM05D003281 ORTHO05D004128 1.9e-51 206.1 142 76.1
Nn7g38195 Nelumbo nucifera HOM05D003281 ORTHO05D004128 1.9e-51 206.1 142 75.4
CSS0018694 Camellia sinensis var. sinensis HOM05D003281 ORTHO05D004128 3.3e-51 205.3 152 70.4
CANSAT56G2301 Cannabis sativa HOM05D003281 ORTHO05D004128 3.3e-51 205.3 165 66.7
CANSAT56G3182 Cannabis sativa HOM05D003281 ORTHO05D004128 3.3e-51 205.3 165 66.7
Dinv18011 Davidia involucrata HOM05D003281 ORTHO05D004128 3.3e-51 205.3 146 72.6
FAN19G0112 Fragaria x ananassa HOM05D003281 ORTHO05D004128 3.3e-51 205.3 142 75.4
MBI14_g44727_MAGBIO Magnolia biondii HOM05D003281 ORTHO05D004128 3.3e-51 205.3 142 75.4
MD12G1033700 Malus domestica HOM05D003281 ORTHO05D004128 3.3e-51 205.3 142 75.4
Thecc.02G006200 Theobroma cacao HOM05D003281 ORTHO05D004128 3.3e-51 205.3 165 68.5
CsaV3_1G010170 Cucumis sativus L. HOM05D003281 ORTHO05D004128 4.3e-51 204.9 142 75.4
MD14G1035300 Malus domestica HOM05D003281 ORTHO05D004128 4.3e-51 204.9 142 74.6
PSO675G6428 Papaver somniferum HOM05D003281 ORTHO05D004128 4.3e-51 204.9 142 73.9
GSVIVG01012120001 Vitis vinifera HOM05D003281 ORTHO05D004128 4.3e-51 204.9 151 70.9
Potri.010G114400 Populus trichocarpa HOM05D003281 ORTHO05D004128 5.6e-51 204.5 142 74.6
vmacro14667 Vaccinium macrocarpon HOM05D003281 ORTHO05D004128 5.6e-51 204.5 142 73.9
ClCG03G004230 Citrullus lanatus HOM05D003281 ORTHO05D004128 7.3e-51 204.1 165 68.5
COL.COLO4_17637 Corchorus olitorius HOM05D003281 ORTHO05D004128 7.3e-51 204.1 142 75.4
Sabra10G0084400 Salix brachista HOM05D003281 ORTHO05D004128 7.3e-51 204.1 142 74.6
Gohir.A01G124000 Gossypium hirsutum HOM05D003281 ORTHO05D004128 9.6e-51 203.8 142 74.6
Gohir.D01G111800 Gossypium hirsutum HOM05D003281 ORTHO05D004128 9.6e-51 203.8 142 74.6
Sed0004438 Sechium edule HOM05D003281 ORTHO05D004128 9.6e-51 203.8 142 75.4
CAN.G514.6 Capsicum annuum HOM05D003281 ORTHO05D004128 1.2e-50 203.4 142 73.2
TWI34G0807 Tripterygium wilfordii HOM05D003281 ORTHO05D004128 1.2e-50 203.4 142 74.6
Manes.08G044300 Manihot esculenta HOM05D003281 ORTHO05D004128 1.6e-50 203.0 142 74.6
Prupe.5G007600 Prunus persica HOM05D003281 ORTHO05D004128 1.6e-50 203.0 142 74.6
TAR626G1141 Trochodendron aralioides HOM05D003281 ORTHO05D004128 1.6e-50 203.0 142 73.9
CARHR129210 Cardamine hirsuta HOM05D003281 ORTHO05D004128 2.1e-50 202.6 142 73.9
Cfa000681 Carpinus fangiana HOM05D003281 ORTHO05D004128 2.1e-50 202.6 146 72.6
CiPaw.10G062800 Carya illinoinensis HOM05D003281 ORTHO05D004128 2.1e-50 202.6 142 73.9
AUR62015011 Chenopodium quinoa HOM05D003281 ORTHO05D004128 2.1e-50 202.6 142 72.5
Dinv01965 Davidia involucrata HOM05D003281 ORTHO05D004128 2.1e-50 202.6 142 73.2
PSO017G0093 Papaver somniferum HOM05D003281 ORTHO05D004128 2.1e-50 202.6 142 73.9
Rhsim01G0054700 Rhododendron simsii HOM05D003281 ORTHO05D004128 2.1e-50 202.6 142 73.2
Rhsim04G0092800 Rhododendron simsii HOM05D003281 ORTHO05D004128 2.1e-50 202.6 142 73.2
PGSC0003DMG400020817 Solanum tuberosum HOM05D003281 ORTHO05D004128 2.1e-50 202.6 149 69.8
Nitab4.5_0000443g0070 Nicotiana tabacum HOM05D003281 ORTHO05D004128 2.8e-50 202.2 142 72.5
Nitab4.5_0006246g0040 Nicotiana tabacum HOM05D003281 ORTHO05D004128 2.8e-50 202.2 142 72.5
Peaxi162Scf00199g00516 Petunia axillaris HOM05D003281 ORTHO05D004128 2.8e-50 202.2 142 72.5
Solyc08g075160.3 Solanum lycopersicum HOM05D003281 ORTHO05D004128 2.8e-50 202.2 142 72.5
Sopen08g023790 Solanum pennellii HOM05D003281 ORTHO05D004128 2.8e-50 202.2 142 72.5
Ca_18076_v3 Cicer arietinum L. HOM05D003281 ORTHO05D004128 3.6e-50 201.8 165 66.7
Sc26g0004530 Simmondsia chinensis HOM05D003281 ORTHO05D004128 3.6e-50 201.8 142 73.2
AT2G35040 Arabidopsis thaliana HOM05D003281 ORTHO05D004128 4.7e-50 201.4 142 73.9
MSTRG.16470 Avicennia marina HOM05D003281 ORTHO05D004128 4.7e-50 201.4 142 72.5
Carub.0004s1674 Capsella rubella HOM05D003281 ORTHO05D004128 4.7e-50 201.4 142 73.9
AUR62034379 Chenopodium quinoa HOM05D003281 ORTHO05D004128 4.7e-50 201.4 142 72.5
Thhalv10016407m.g Eutrema salsugineum HOM05D003281 ORTHO05D004128 4.7e-50 201.4 142 73.9
Gorai.002G136700 Gossypium raimondii HOM05D003281 ORTHO05D004128 4.7e-50 201.4 142 73.9
Hma1.2p1_0181F.1_g079910 Hydrangea macrophylla HOM05D003281 ORTHO05D004128 4.7e-50 201.4 142 73.2
RcHm_v2.0_Chr1g0326741 Rosa chinensis HOM05D003281 ORTHO05D004128 4.7e-50 201.4 142 73.9
SalBow1G2706 Salvia bowleyana HOM05D003281 ORTHO05D004128 4.7e-50 201.4 142 73.2
SalBow3G0238 Salvia bowleyana HOM05D003281 ORTHO05D004128 4.7e-50 201.4 142 73.2
AL4G31070 Arabidopsis lyrata HOM05D003281 ORTHO05D004128 6.2e-50 201.1 152 68.4
SGA_v2.0_scaffold202G41492 Striga asiatica HOM05D003281 ORTHO05D004128 6.2e-50 201.1 142 72.5
Aa31LG9G16170 Aethionema arabicum HOM05D003281 ORTHO05D004128 8.1e-50 200.7 142 72.5
BcaB02g09485 Brassica carinata HOM05D003281 ORTHO05D004128 8.1e-50 200.7 142 73.9
C04p13760 Brassica napus HOM05D003281 ORTHO05D004128 8.1e-50 200.7 142 73.9
BolC4t22966H Brassica oleracea HOM05D003281 ORTHO05D004128 8.1e-50 200.7 142 73.9
BraA05t20007Z Brassica rapa HOM05D003281 ORTHO05D004128 8.1e-50 200.7 142 73.9
Lj2A344T44 Lonicera japonica HOM05D003281 ORTHO05D004128 8.1e-50 200.7 142 73.9
SGA_v2.0_scaffold6G03254 Striga asiatica HOM05D003281 ORTHO05D004128 8.1e-50 200.7 142 72.5
Cc02_g09680 Coffea canephora HOM05D003281 ORTHO05D004128 1.1e-49 200.3 142 73.2
Duzib248G1352 Durio zibethinus HOM05D003281 ORTHO05D004128 1.1e-49 200.3 142 73.9
Psat5g186600 Pisum sativum HOM05D003281 ORTHO05D004128 1.1e-49 200.3 146 71.2
Psat5g222920 Pisum sativum HOM05D003281 ORTHO05D004128 1.1e-49 200.3 146 71.2
Atru.chr10.431 Acer truncatum HOM05D003281 ORTHO05D004128 1.4e-49 199.9 142 73.2
Cc01_g05380 Coffea canephora HOM05D003281 ORTHO05D004128 1.4e-49 199.9 142 72.5
TPR.G6549 Trifolium pratense HOM05D003281 ORTHO05D004128 1.4e-49 199.9 165 66.7
Gohir.D12G047400 Gossypium hirsutum HOM05D003281 ORTHO05D004128 1.8e-49 199.5 142 73.2
Gorai.008G050100 Gossypium raimondii HOM05D003281 ORTHO05D004128 1.8e-49 199.5 142 73.2
QL11p013631 Quercus lobata HOM05D003281 ORTHO05D004128 1.8e-49 199.5 165 66.7
Rhsim04G0089200 Rhododendron simsii HOM05D003281 ORTHO05D004128 1.8e-49 199.5 142 72.5
SGA_v2.0_scaffold254G45247 Striga asiatica HOM05D003281 ORTHO05D004128 1.8e-49 199.5 142 72.5
VMungo1080G1879 Vigna mungo HOM05D003281 ORTHO05D004128 1.8e-49 199.5 142 73.2
Phvul.005G018700 Phaseolus vulgaris HOM05D003281 ORTHO05D004128 2.4e-49 199.1 142 73.9
arahy.Tifrunner.gnm1.ann1.F6IBWZ Arachis hypogaea HOM05D003281 ORTHO05D004128 3.1e-49 198.7 165 65.5
DCAR_001294 Daucus carota HOM05D003281 ORTHO05D004128 3.1e-49 198.7 142 72.5
Lalb_Chr07g0189731 Lupinus albus HOM05D003281 ORTHO05D004128 3.1e-49 198.7 142 72.5
Medtr5g095820 Medicago truncatula HOM05D003281 ORTHO05D004128 3.1e-49 198.7 142 72.5
Rhsim04G0089900 Rhododendron simsii HOM05D003281 ORTHO05D004128 3.1e-49 198.7 146 70.5
TPR.G1398 Trifolium pratense HOM05D003281 ORTHO05D004128 3.1e-49 198.7 142 72.5
A05p10660 Brassica napus HOM05D003281 ORTHO05D004128 4.0e-49 198.4 142 73.2
ECA232G1899 Erigeron canadensis HOM05D003281 ORTHO05D004128 4.0e-49 198.4 142 71.8
SalBow1G7114 Salvia bowleyana HOM05D003281 ORTHO05D004128 4.0e-49 198.4 142 72.5
Aqoxy5G04041 Aquilegia oxysepala HOM05D003281 ORTHO05D004128 5.2e-49 198.0 146 69.2
arahy.Tifrunner.gnm1.ann1.D0LQY1 Arachis hypogaea HOM05D003281 ORTHO05D004128 6.9e-49 197.6 165 64.8
Cpa.g.sc30.140 Carica papaya HOM05D003281 ORTHO05D004128 6.9e-49 197.6 142 71.8
THA.LOC104798558 Tarenaya hassleriana HOM05D003281 ORTHO05D004128 6.9e-49 197.6 142 71.8
THA.LOC104814352 Tarenaya hassleriana HOM05D003281 ORTHO05D004128 6.9e-49 197.6 142 71.8
Migut.B00724 Erythranthe guttata HOM05D003281 ORTHO05D004128 9.0e-49 197.2 142 70.4
Lsat_1_v5_gn_4_97540 Lactuca sativa HOM05D003281 ORTHO05D004128 9.0e-49 197.2 142 71.8
AUR62022320 Chenopodium quinoa HOM05D003281 ORTHO05D004128 1.2e-48 196.8 142 70.4
HanXRQChr13g0406911 Helianthus annuus HOM05D003281 ORTHO05D004128 1.2e-48 196.8 142 71.1
Glyma.04G133100 Glycine max HOM05D003281 ORTHO05D004128 1.5e-48 196.4 142 72.5
Glyma.11G158400 Glycine max HOM05D003281 ORTHO05D004128 1.5e-48 196.4 142 72.5
Cc02_g28610 Coffea canephora HOM05D003281 ORTHO05D004128 2.0e-48 196.1 142 71.8
ATR0150G008 Amborella trichopoda HOM05D003281 ORTHO05D004128 2.6e-48 195.7 165 64.8
EL10Ac5g10906 Beta vulgaris HOM05D003281 ORTHO05D004128 3.4e-48 195.3 142 72.5
Rhsim01G0111500 Rhododendron simsii HOM05D003281 ORTHO05D004128 3.4e-48 195.3 141 71.6
EL10Ac1g01734 Beta vulgaris HOM05D003281 ORTHO05D004128 5.8e-48 194.5 142 72.5
Medtr3g013710 Medicago truncatula HOM05D003281 ORTHO05D004128 1.7e-47 193.0 142 71.1
Actinidia11434 Actinidia chinensis HOM05D003281 ORTHO05D004128 2.9e-47 192.2 152 69.1
Ciclev10014669m.g Citrus clementina HOM05D003281 ORTHO05D004128 2.9e-47 192.2 142 69.7
Os08g0206600 Oryza sativa ssp. japonica HOM05D003281 ORTHO05D004128 6.4e-47 191.0 142 69.7
SEGI_14905 Sequoiadendron giganteum HOM05D003281 ORTHO05D004128 1.1e-46 190.3 143 67.1
Zm00001eb070920 Zea mays HOM05D003281 ORTHO05D004128 7.1e-46 187.6 142 69.7
HPP92_009499 Vanilla planifolia HOM05D003281 ORTHO05D004128 6.0e-45 184.5 142 67.6
Zm00001eb413740 Zea mays HOM05D003281 ORTHO05D004128 6.0e-45 184.5 145 68.3
FAN06G3868 Fragaria x ananassa HOM05D003281 ORTHO05D004128 1.0e-44 183.7 142 70.4
CDE06G0368 Ceratophyllum demersum HOM05D003281 ORTHO05D004128 1.3e-44 183.3 142 65.5
Pp3c12_24590 Physcomitrium patens HOM05D003281 ORTHO05D004128 1.7e-44 183.0 145 65.5
Gohir.A12G048600 Gossypium hirsutum HOM05D003281 ORTHO05D004128 2.3e-44 182.6 115 80.0
Lj3g0002589 Lotus japonicus HOM05D003281 ORTHO05D004128 3.9e-44 181.8 142 66.2
CDE02G3604 Ceratophyllum demersum HOM05D003281 ORTHO05D004128 5.1e-44 181.4 142 65.5
Ah.01g022040 Amaranthus hybridus HOM05D003281 ORTHO05D004128 8.7e-44 180.6 184 55.4
Pp3c4_1350 Physcomitrium patens HOM05D003281 ORTHO05D004128 1.9e-43 179.5 145 64.8
Mapoly0032s0021 Marchantia polymorpha HOM05D003281 ORTHO05D004128 3.3e-43 178.7 143 65.0
AagrBONN_evm.TU.Sc2ySwM_368.3406 Anthoceros agrestis HOM05D003281 ORTHO05D004128 2.8e-42 175.6 142 62.7
CBR_g50928 Chara braunii HOM05D003281 ORTHO05D004128 4.0e-41 171.8 143 62.9
SMO228G0099 Selaginella moellendorffii HOM05D003281 ORTHO05D004128 8.4e-39 164.1 144 61.1
PRCOL_00001991 Prasinoderma coloniale HOM05D003281 ORTHO05D004128 2.4e-38 162.5 142 60.6
MCO04G009 Micromonas commoda HOM05D003281 ORTHO05D004128 1.6e-37 159.8 146 58.2
Cre12.g537581 Chlamydomonas reinhardtii HOM05D003281 ORTHO05D004128 2.1e-37 159.5 152 55.3
FAN01G0101 Fragaria x ananassa HOM05D003281 ORTHO05D004128 1.4e-33 146.7 155 56.1
Eucgr.A00705 Eucalyptus grandis HOM05D003281 ORTHO05D004128 2.1e-26 122.9 87 73.6
FAN03G3028 Fragaria x ananassa HOM05D003281 ORTHO05D004128 4.0e-25 118.6 80 73.8
Rhsim04G0114800 Rhododendron simsii HOM05D003281 ORTHO05D004128 1.7e-23 113.2 142 49.3
unitig_46.g18363 Utricularia gibba HOM05D005736 ORTHO05D007215 3.0e-20 102.4 82 59.8
unitig_46.g18376 Utricularia gibba HOM05D003281 ORTHO05D004128 3.0e-20 102.4 82 59.8
unitig_48.g30291 Utricularia gibba HOM05D003281 ORTHO05D004128 3.0e-20 102.4 82 59.8
unitig_46.g18256 Utricularia gibba HOM05D003281 ORTHO05D004128 6.7e-20 101.3 82 58.5
Eucgr.A00697 Eucalyptus grandis HOM05D003281 ORTHO05D004128 8.7e-20 100.9 70 74.3
MD12G1088900 Malus domestica HOM05D003281 ORTHO05D004128 8.2e-18 94.4 109 50.5
FAN06G1854 Fragaria x ananassa HOM05D003281 ORTHO05D004128 4.1e-17 92.0 69 69.6
FAN15G0156 Fragaria x ananassa HOM05D003281 ORTHO05D004128 1.2e-16 90.5 71 67.6
HPP92_009463 Vanilla planifolia HOM05D003281 ORTHO05D004128 1.0e-15 87.4 69 63.8
unitig_46.g18375 Utricularia gibba HOM05D003281 ORTHO05D004128 5.5e-14 81.6 69 60.9
unitig_48.g30290 Utricularia gibba HOM05D003281 ORTHO05D004128 5.5e-14 81.6 69 60.9
Haze_26981 Corylus avellana HOM05D003281 ORTHO05D004128 9.7e-11 70.9 150 34.0
unitig_46.g18364 Utricularia gibba HOM05D003281 ORTHO05D004128 6.3e-10 68.2 95 44.2
Pp3s32_111 Physcomitrium patens HOM05D003281 ORTHO05D004128 1.5e-08 63.5 146 34.9
AL1G45500 Arabidopsis lyrata HOM05D003023 ORTHO05D003412 3.4e-08 62.4 52 61.5
Eucgr.A00699 Eucalyptus grandis HOM05D003281 ORTHO05D004128 1.0e-07 60.8 79 50.6
C09p67310 Brassica napus HOM05D012485 ORTHO05D020051 1.7e-07 60.1 71 47.9
HPP92_009464 Vanilla planifolia HOM05D003281 ORTHO05D004128 1.7e-07 60.1 46 69.6
BolC2t10487H Brassica oleracea HOM05D003281 ORTHO05D020051 2.9e-07 59.3 71 47.9
BcaC03g16612 Brassica carinata HOM05D012485 ORTHO05D020051 3.8e-07 58.9 71 45.1
C02p44410 Brassica napus HOM05D012485 ORTHO05D020051 3.8e-07 58.9 71 45.1
BraA08t32277Z Brassica rapa HOM05D003281 ORTHO05D020051 1.1e-06 57.4 69 46.4
BcaB05g22512 Brassica carinata HOM05D003281 ORTHO05D020051 1.4e-06 57.0 129 34.1
BcaC02g07738 Brassica carinata HOM05D003281 ORTHO05D032323 1.4e-06 57.0 41 65.9
arahy.Tifrunner.gnm1.ann1.D1T9JW Arachis hypogaea HOM05D003281 ORTHO05D011443 1.9e-06 56.6 59 54.2
BcaC02g11585 Brassica carinata HOM05D003281 ORTHO05D004128 5.5e-06 55.1 109 42.2


User provided reference genes

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