Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.L01202 Eucalyptus grandis HOM05D004281 ORTHO05D004839 5.1e-123 444.5 236 100.0
Eucgr.F02801 Eucalyptus grandis HOM05D004281 ORTHO05D004839 1.6e-121 439.5 236 98.3
Gohir.A11G012100 Gossypium hirsutum HOM05D004281 ORTHO05D004839 2.0e-79 299.7 188 81.4
THA.LOC104804375 Tarenaya hassleriana HOM05D004281 ORTHO05D004839 7.7e-79 297.7 188 78.7
Gohir.D11G011300 Gossypium hirsutum HOM05D004281 ORTHO05D004839 1.3e-78 297.0 188 80.9
Gorai.007G012700 Gossypium raimondii HOM05D004281 ORTHO05D004839 1.3e-78 297.0 188 80.9
Dinv24743 Davidia involucrata HOM05D004281 ORTHO05D004839 1.7e-78 296.6 192 80.7
Gohir.A04G135700 Gossypium hirsutum HOM05D004281 ORTHO05D004839 1.7e-78 296.6 188 80.9
Gohir.D04G178800 Gossypium hirsutum HOM05D004281 ORTHO05D004839 1.7e-78 296.6 188 80.9
Gorai.012G171900 Gossypium raimondii HOM05D004281 ORTHO05D004839 1.7e-78 296.6 188 80.9
arahy.Tifrunner.gnm1.ann1.MYV34H Arachis hypogaea HOM05D004281 ORTHO05D004839 2.9e-78 295.8 189 79.4
TWI15G0067 Tripterygium wilfordii HOM05D004281 ORTHO05D004839 2.9e-78 295.8 196 76.5
Atru.chr3.1980 Acer truncatum HOM05D004281 ORTHO05D004839 8.5e-78 294.3 192 77.1
Manes.02G102600 Manihot esculenta HOM05D004281 ORTHO05D004839 8.5e-78 294.3 194 78.4
COL.COLO4_27572 Corchorus olitorius HOM05D004281 ORTHO05D004839 1.4e-77 293.5 197 76.6
Rhsim09G0002300 Rhododendron simsii HOM05D000705 ORTHO05D002970 1.4e-77 293.5 224 68.3
TAR365G0664 Trochodendron aralioides HOM05D004281 ORTHO05D004839 1.4e-77 293.5 202 74.3
Atru.chr8.1217 Acer truncatum HOM05D004281 ORTHO05D004839 1.9e-77 293.1 192 75.5
CANSAT78G2301 Cannabis sativa HOM05D004281 ORTHO05D004839 2.5e-77 292.7 184 79.3
Nn1g09410 Nelumbo nucifera HOM05D004281 ORTHO05D004839 5.5e-77 291.6 191 79.6
Potri.017G001800 Populus trichocarpa HOM05D004281 ORTHO05D004839 7.2e-77 291.2 190 76.3
PGR142G2669 Punica granatum HOM05D004281 ORTHO05D004839 9.4e-77 290.8 193 78.2
CSS0036502 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 2.7e-76 289.3 165 87.9
Carub.0004s2660 Capsella rubella HOM05D004281 ORTHO05D004839 4.6e-76 288.5 188 75.5
arahy.Tifrunner.gnm1.ann1.HHGT95 Arachis hypogaea HOM05D004281 ORTHO05D004839 6.1e-76 288.1 196 75.5
CiPaw.01G202700 Carya illinoinensis HOM05D004281 ORTHO05D004839 6.1e-76 288.1 188 76.6
Actinidia18388 Actinidia chinensis HOM05D004281 ORTHO05D004839 7.9e-76 287.7 197 75.6
Aa31LG1G25720 Aethionema arabicum HOM05D004281 ORTHO05D004839 7.9e-76 287.7 188 75.5
Thhalv10001807m.g Eutrema salsugineum HOM05D004281 ORTHO05D004839 7.9e-76 287.7 188 75.0
CARHR139210 Cardamine hirsuta HOM05D004281 ORTHO05D004839 1.0e-75 287.3 190 74.7
Sp4g26130 Schrenkiella parvula HOM05D004281 ORTHO05D004839 1.0e-75 287.3 188 75.0
CSS0013668 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 1.4e-75 287.0 165 87.3
AL4G42920 Arabidopsis lyrata HOM05D004281 ORTHO05D004839 1.8e-75 286.6 184 76.6
GSVIVG01038261001 Vitis vinifera HOM05D004281 ORTHO05D004839 1.8e-75 286.6 162 87.7
Thecc.05G001000 Theobroma cacao HOM05D004281 ORTHO05D004839 5.1e-75 285.0 190 77.9
Glyma.08G087500 Glycine max HOM05D004281 ORTHO05D004839 6.7e-75 284.6 189 78.8
vmacro00726 Vaccinium macrocarpon HOM05D004281 ORTHO05D004839 6.7e-75 284.6 165 86.1
AT2G44050 Arabidopsis thaliana HOM05D004281 ORTHO05D004839 8.8e-75 284.3 184 75.5
MSTRG.24546 Avicennia marina HOM05D004281 ORTHO05D004839 1.1e-74 283.9 166 83.1
ECA233G0955 Erigeron canadensis HOM05D004281 ORTHO05D004839 2.0e-74 283.1 201 74.1
Potri.007G146000 Populus trichocarpa HOM05D004281 ORTHO05D004839 2.0e-74 283.1 190 77.4
Ciclev10022149m.g Citrus clementina HOM05D004281 ORTHO05D004839 3.3e-74 282.3 193 73.6
THA.LOC104802349 Tarenaya hassleriana HOM05D004281 ORTHO05D004839 7.4e-74 281.2 197 70.6
BcaB06g29353 Brassica carinata HOM05D004281 ORTHO05D004839 9.7e-74 280.8 188 74.5
BcaC02g07139 Brassica carinata HOM05D004281 ORTHO05D004839 9.7e-74 280.8 185 74.6
BolC4t28587H Brassica oleracea HOM05D004281 ORTHO05D004839 9.7e-74 280.8 185 74.6
Psat5g058760 Pisum sativum HOM05D004281 ORTHO05D004839 1.3e-73 280.4 191 75.4
Psat7g088840 Pisum sativum HOM05D004281 ORTHO05D004839 1.7e-73 280.0 189 75.7
Medtr4g094700 Medicago truncatula HOM05D004281 ORTHO05D004839 2.2e-73 279.6 192 72.9
BraA04t18776Z Brassica rapa HOM05D004281 ORTHO05D004839 2.8e-73 279.3 188 73.9
A03p24650 Brassica napus HOM05D004281 ORTHO05D004839 3.7e-73 278.9 188 73.9
BraA03t11671Z Brassica rapa HOM05D004281 ORTHO05D004839 3.7e-73 278.9 188 73.9
SGA_v2.0_scaffold37G14906 Striga asiatica HOM05D004281 ORTHO05D004839 4.8e-73 278.5 221 67.4
BcaB01g03334 Brassica carinata HOM05D004281 ORTHO05D004839 6.3e-73 278.1 188 73.9
BcaB06g29512 Brassica carinata HOM05D004281 ORTHO05D004839 6.3e-73 278.1 195 70.8
BolC3t15286H Brassica oleracea HOM05D004281 ORTHO05D004839 6.3e-73 278.1 188 72.9
HanXRQChr13g0392191 Helianthus annuus HOM05D004281 ORTHO05D004839 6.3e-73 278.1 170 81.2
Lalb_Chr12g0209091 Lupinus albus HOM05D004281 ORTHO05D004839 6.3e-73 278.1 197 70.1
A04p33170 Brassica napus HOM05D004281 ORTHO05D004839 8.2e-73 277.7 185 74.1
Lj4g0008259 Lotus japonicus HOM05D004281 ORTHO05D004839 1.1e-72 277.3 186 78.0
Cc00_g16880 Coffea canephora HOM05D004281 ORTHO05D004839 1.4e-72 276.9 157 87.9
Phvul.002G189800 Phaseolus vulgaris HOM05D004281 ORTHO05D004839 2.4e-72 276.2 187 75.4
Aa31LG10G14140 Aethionema arabicum HOM05D004281 ORTHO05D004839 3.1e-72 275.8 188 74.5
Migut.G00913 Erythranthe guttata HOM05D004281 ORTHO05D004839 4.1e-72 275.4 188 74.5
QL10p065802 Quercus lobata HOM05D004281 ORTHO05D004839 4.1e-72 275.4 189 75.1
Lalb_Chr13g0292401 Lupinus albus HOM05D004281 ORTHO05D004839 5.3e-72 275.0 190 73.2
Prupe.7G270800 Prunus persica HOM05D004281 ORTHO05D004839 5.3e-72 275.0 189 73.0
FvH4_1g00110 Fragaria vesca HOM05D004281 ORTHO05D004839 6.9e-72 274.6 183 76.5
Sabra17G0005800 Salix brachista HOM05D004281 ORTHO05D004839 1.5e-71 273.5 187 72.7
RcHm_v2.0_Chr2g0084411 Rosa chinensis HOM05D004281 ORTHO05D004839 2.0e-71 273.1 168 80.4
Cc05_g03580 Coffea canephora HOM05D004281 ORTHO05D004839 7.7e-71 271.2 168 82.1
PGR142G1214 Punica granatum HOM05D004281 ORTHO05D004839 1.0e-70 270.8 236 62.3
FvH4_2g10600 Fragaria vesca HOM05D004281 ORTHO05D004839 6.5e-70 268.1 173 76.3
FAN24G2282 Fragaria x ananassa HOM05D004281 ORTHO05D004839 6.5e-70 268.1 173 76.3
Aqoxy7G00623 Aquilegia oxysepala HOM05D004281 ORTHO05D004839 1.1e-69 267.3 186 72.0
C03p29390 Brassica napus HOM05D004281 ORTHO05D004839 1.1e-69 267.3 222 64.4
CDE09G0590 Ceratophyllum demersum HOM05D004281 ORTHO05D004839 1.1e-69 267.3 185 71.9
FAN15G1026 Fragaria x ananassa HOM05D004281 ORTHO05D004839 1.9e-69 266.5 173 76.3
Lsat_1_v5_gn_8_33320 Lactuca sativa HOM05D004281 ORTHO05D004839 5.5e-69 265.0 165 77.6
MD15G1142400 Malus domestica HOM05D004281 ORTHO05D004839 9.4e-69 264.2 169 74.0
HanXRQChr13g0392171 Helianthus annuus HOM05D004281 ORTHO05D004839 2.1e-68 263.1 190 68.9
C04p70870 Brassica napus HOM05D001249 ORTHO05D003440 3.6e-68 262.3 177 72.9
Peaxi162Scf00459g00125 Petunia axillaris HOM05D004281 ORTHO05D004839 4.7e-68 261.9 186 70.4
BcaC01g05189 Brassica carinata HOM05D001249 ORTHO05D003440 7.9e-68 261.2 191 70.2
PSO732G0016 Papaver somniferum HOM05D004281 ORTHO05D004839 1.8e-67 260.0 170 78.2
PSO675G2617 Papaver somniferum HOM05D004281 ORTHO05D004839 3.9e-67 258.8 187 70.6
VMungo0251G0005 Vigna mungo HOM05D004281 ORTHO05D004839 5.1e-67 258.5 176 75.0
Ca_18245_v3 Cicer arietinum L. HOM05D004281 ORTHO05D004839 1.1e-66 257.3 157 82.2
Oeu014981.1 Olea europaea HOM05D004281 ORTHO05D004839 1.1e-66 257.3 146 85.6
HPP92_005601 Vanilla planifolia HOM05D004281 ORTHO05D004839 1.5e-66 256.9 189 72.0
CAN.G607.11 Capsicum annuum HOM05D004281 ORTHO05D004839 2.6e-66 256.1 195 66.2
PGSC0003DMG400025217 Solanum tuberosum HOM05D004281 ORTHO05D004839 2.6e-66 256.1 186 68.8
Sopen08g005770 Solanum pennellii HOM05D004281 ORTHO05D004839 3.3e-66 255.8 186 68.8
Solyc08g015660.3 Solanum lycopersicum HOM05D004281 ORTHO05D004839 4.4e-66 255.4 186 68.8
Lsat_1_v5_gn_8_33340 Lactuca sativa HOM05D004281 ORTHO05D004839 5.7e-66 255.0 138 89.9
AUR62023693 Chenopodium quinoa HOM05D004281 ORTHO05D004839 9.7e-66 254.2 187 67.9
Haze_11113 Corylus avellana HOM05D004281 ORTHO05D004839 9.7e-66 254.2 180 75.6
Solyc12g096590.3 Solanum lycopersicum HOM05D004281 ORTHO05D004839 9.7e-66 254.2 186 68.8
PGSC0003DMG400029273 Solanum tuberosum HOM05D004281 ORTHO05D004839 9.7e-66 254.2 188 68.6
EL10Ac3g06178 Beta vulgaris HOM05D004281 ORTHO05D004839 1.3e-65 253.8 187 68.4
Sed0022244 Sechium edule HOM05D004281 ORTHO05D004839 1.7e-65 253.4 188 67.6
Sopen12g032420 Solanum pennellii HOM05D004281 ORTHO05D004839 2.8e-65 252.7 186 68.3
EL10Ac4g08581 Beta vulgaris HOM05D004281 ORTHO05D004839 4.8e-65 251.9 183 69.9
Sed0015421 Sechium edule HOM05D004281 ORTHO05D004839 6.3e-65 251.5 188 67.0
FAN26G2986 Fragaria x ananassa HOM05D000705 ORTHO05D004839 8.2e-65 251.1 179 74.3
CsaV3_6G032410 Cucumis sativus L. HOM05D004281 ORTHO05D004839 1.4e-64 250.4 163 73.0
CAN.G566.44 Capsicum annuum HOM05D004281 ORTHO05D004839 1.8e-64 250.0 163 73.0
Nitab4.5_0000668g0110 Nicotiana tabacum HOM05D004281 ORTHO05D004839 1.8e-64 250.0 165 73.9
Zm00001eb068110 Zea mays HOM05D004281 ORTHO05D004839 2.4e-64 249.6 199 66.3
Nitab4.5_0001110g0040 Nicotiana tabacum HOM05D004281 ORTHO05D004839 3.1e-64 249.2 165 73.9
DCAR_027490 Daucus carota HOM05D004281 ORTHO05D004839 9.1e-64 247.7 184 70.7
Os04g0497400 Oryza sativa ssp. japonica HOM05D004281 ORTHO05D004839 1.5e-63 246.9 190 69.5
TPR.G31246 Trifolium pratense HOM05D004281 ORTHO05D004839 3.5e-63 245.7 185 70.8
Cpa.g.sc9.245 Carica papaya HOM05D004281 ORTHO05D004839 4.5e-63 245.4 171 76.0
Zm00001eb432360 Zea mays HOM05D004281 ORTHO05D004839 1.3e-62 243.8 190 66.8
AUR62002492 Chenopodium quinoa HOM05D004281 ORTHO05D004839 1.7e-62 243.4 203 63.1
unitig_578.g16718 Utricularia gibba HOM05D000499 ORTHO05D007471 1.7e-62 243.4 156 74.4
Pp3c27_2710 Physcomitrium patens HOM05D004281 ORTHO05D004839 1.1e-61 240.7 158 71.5
FAN28G0724 Fragaria x ananassa HOM05D006787 ORTHO05D008366 1.9e-61 240.0 209 64.1
Pp3c16_5700 Physcomitrium patens HOM05D004281 ORTHO05D004839 5.5e-61 238.4 158 73.4
QL10p064677 Quercus lobata HOM05D004281 ORTHO05D004839 9.4e-61 237.7 139 83.5
Ah.13g073140 Amaranthus hybridus HOM05D000705 ORTHO05D004839 2.7e-60 236.1 190 64.2
MELO3C011439.2 Cucumis melo HOM05D004281 ORTHO05D004839 2.7e-60 236.1 188 63.8
SMO198G0030 Selaginella moellendorffii HOM05D004281 ORTHO05D004839 6.1e-60 235.0 158 69.6
Cfa008529 Carpinus fangiana HOM05D006787 ORTHO05D008366 1.0e-59 234.2 133 88.0
Lj4A426G8 Lonicera japonica HOM05D004281 ORTHO05D004839 2.3e-59 233.0 127 89.8
Nitab4.5_0001091g0070 Nicotiana tabacum HOM05D004281 ORTHO05D004839 5.7e-58 228.4 161 69.6
ClCG08G010210 Citrullus lanatus HOM05D004281 ORTHO05D004839 1.7e-57 226.9 137 75.9
RcHm_v2.0_Chr7g0227511 Rosa chinensis HOM05D004281 ORTHO05D004839 8.2e-57 224.6 132 81.1
Mapoly0120s0006 Marchantia polymorpha HOM05D004281 ORTHO05D004839 3.1e-56 222.6 164 64.6
ATR0743G183 Amborella trichopoda HOM05D004281 ORTHO05D004839 2.0e-55 219.9 127 82.7
TPR.G18090 Trifolium pratense HOM05D004281 ORTHO05D004839 1.4e-51 207.2 141 75.2
QL08p018116 Quercus lobata HOM05D004281 ORTHO05D004839 1.3e-49 200.7 136 74.3
Duzib212G0492 Durio zibethinus HOM05D004281 ORTHO05D004839 2.2e-49 199.9 150 73.3
BcaB01g03343 Brassica carinata HOM05D001249 ORTHO05D003440 4.8e-49 198.7 136 74.3
MBI07_g44299_MAGBIO Magnolia biondii HOM05D004281 ORTHO05D004839 1.4e-48 197.2 157 67.5
Nitab4.5_0004802g0010 Nicotiana tabacum HOM05D004281 ORTHO05D004839 2.7e-47 193.0 134 67.9
Sc13g0007610 Simmondsia chinensis HOM05D004281 ORTHO05D004839 4.5e-47 192.2 156 68.6
CBR_g29269 Chara braunii HOM05D004281 ORTHO05D004839 1.3e-46 190.7 141 61.7
Nitab4.5_0010298g0020 Nicotiana tabacum HOM05D004281 ORTHO05D004839 2.9e-46 189.5 186 55.4
Cre02.g088850 Chlamydomonas reinhardtii HOM05D004281 ORTHO05D004839 1.8e-43 180.3 145 57.2
unitig_85.g27225 Utricularia gibba HOM05D004281 ORTHO05D004839 1.8e-43 180.3 105 83.8
Hund22685 Selenicereus undatus HOM05D001165 ORTHO05D004839 2.3e-43 179.9 97 87.6
RcHm_v2.0_Chr7g0214271 Rosa chinensis HOM05D004281 ORTHO05D004839 3.1e-40 169.5 97 81.4
Nitab4.5_0000013g0020 Nicotiana tabacum HOM05D004281 ORTHO05D004839 1.5e-37 160.6 141 58.2
Duzib093G0607 Durio zibethinus HOM05D004281 ORTHO05D004839 1.9e-37 160.2 116 74.1
Pp3s30_1010 Physcomitrium patens HOM05D000723 ORTHO05D004839 1.9e-37 160.2 179 46.4
CSS0034557 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 1.3e-33 147.5 133 62.4
Cc00_g12430 Coffea canephora HOM05D004281 ORTHO05D004839 2.2e-33 146.7 76 93.4
Cc00_g08810 Coffea canephora HOM05D004281 ORTHO05D004839 3.7e-33 146.0 77 92.2
Lj5A837G66 Lonicera japonica HOM05D004281 ORTHO05D004839 3.2e-32 142.9 74 91.9
Cc00_g23590 Coffea canephora HOM05D004281 ORTHO05D004839 1.6e-31 140.6 86 83.7
CSS0012879 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 2.0e-31 140.2 168 53.0
CSS0024434 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 2.3e-30 136.7 133 59.4
Ca_28575_v3 Cicer arietinum L. HOM05D004281 ORTHO05D004839 3.0e-30 136.3 131 47.3
C08p46660 Brassica napus HOM05D004281 ORTHO05D004839 8.9e-27 124.8 98 66.3
Cc00_g34060 Coffea canephora HOM05D004281 ORTHO05D004839 3.7e-25 119.4 73 79.5
C05p19750 Brassica napus HOM05D004281 ORTHO05D004839 8.3e-25 118.2 96 64.6
BolC8t52208H Brassica oleracea HOM05D004281 ORTHO05D004839 1.6e-23 114.0 128 51.6
TAR362G0423 Trochodendron aralioides HOM05D004281 ORTHO05D004839 6.0e-23 112.1 72 79.2
BcaC05g25876 Brassica carinata HOM05D004281 ORTHO05D004839 6.8e-19 98.6 70 70.0
QL08p018107 Quercus lobata HOM05D004281 ORTHO05D004839 8.3e-17 91.7 46 91.3
Cc00_g15820 Coffea canephora HOM05D004281 ORTHO05D004839 6.0e-15 85.5 103 52.4
Cc00_g15810 Coffea canephora HOM05D004281 ORTHO05D004839 1.3e-14 84.3 52 76.9
Cc00_g25460 Coffea canephora HOM05D004281 ORTHO05D004839 1.7e-14 84.0 42 92.9
Cc05_g00900 Coffea canephora HOM05D004281 ORTHO05D004839 2.3e-14 83.6 42 90.5
Lsat_1_v5_gn_8_13760 Lactuca sativa HOM05D004281 ORTHO05D004839 4.3e-13 79.3 125 44.8
Actinidia34560 Actinidia chinensis HOM05D028692 ORTHO05D015213 8.9e-11 71.6 37 89.2
Cc05_g01000 Coffea canephora HOM05D004281 ORTHO05D004839 1.6e-07 60.8 33 84.8
Hma1.2p1_0872F.1_g231180 Hydrangea macrophylla HOM05D004281 ORTHO05D004839 3.5e-07 59.7 99 45.5
AagrBONN_evm.TU.Sc2ySwM_344.4461 Anthoceros agrestis HOM05D004281 ORTHO05D004839 6.0e-07 58.9 49 61.2
Cc05_g01010 Coffea canephora HOM05D004281 ORTHO05D004839 7.8e-07 58.5 32 87.5
Cfa027194 Carpinus fangiana HOM05D004281 ORTHO05D004839 1.3e-06 57.8 91 35.2


User provided reference genes

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