Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.L01129 Eucalyptus grandis HOM05D003971 ORTHO05D004762 9.1e-124 446.8 211 100.0
Eucgr.K00065 Eucalyptus grandis HOM05D003971 ORTHO05D004762 2.0e-123 445.7 211 99.5
Eucgr.L01124 Eucalyptus grandis HOM05D003971 ORTHO05D004762 1.4e-119 433.0 211 96.7
Lj5C87G6 Lonicera japonica HOM05D003971 ORTHO05D004762 5.4e-100 367.9 209 79.9
TAR622G0096 Trochodendron aralioides HOM05D003971 ORTHO05D004762 1.2e-99 366.7 208 81.2
PGR083G2644 Punica granatum HOM05D003971 ORTHO05D004762 2.0e-99 365.9 208 81.2
Ciclev10031176m.g Citrus clementina HOM05D003971 ORTHO05D004762 4.3e-97 358.2 208 79.8
MBI07_g41261_MAGBIO Magnolia biondii HOM05D003971 ORTHO05D004762 4.3e-97 358.2 208 79.3
Potri.012G108100 Populus trichocarpa HOM05D003971 ORTHO05D004762 4.3e-97 358.2 208 78.8
Sabra12G0079300 Salix brachista HOM05D003971 ORTHO05D004762 5.6e-97 357.8 210 79.0
Cpa.g.sc13.168 Carica papaya HOM05D003971 ORTHO05D004762 1.6e-96 356.3 209 78.5
QL10p000509 Quercus lobata HOM05D003971 ORTHO05D004762 1.6e-96 356.3 209 79.9
Atru.chr6.1916 Acer truncatum HOM05D003971 ORTHO05D004762 2.1e-96 355.9 208 78.4
Psat5g055040 Pisum sativum HOM05D003971 ORTHO05D004762 2.1e-96 355.9 208 79.8
Rhsim08G0197300 Rhododendron simsii HOM05D003971 ORTHO05D004762 2.1e-96 355.9 208 78.4
vmacro19182 Vaccinium macrocarpon HOM05D003971 ORTHO05D004762 2.8e-96 355.5 208 78.4
Cfa018707 Carpinus fangiana HOM05D003971 ORTHO05D004762 6.2e-96 354.4 209 78.9
Nn4g22021 Nelumbo nucifera HOM05D003971 ORTHO05D004762 6.2e-96 354.4 208 78.4
CiPaw.11G001000 Carya illinoinensis HOM05D003971 ORTHO05D004762 1.1e-95 353.6 207 78.7
Lalb_Chr11g0069181 Lupinus albus HOM05D003971 ORTHO05D004762 1.1e-95 353.6 208 78.8
Ca_10878_v3 Cicer arietinum L. HOM05D003971 ORTHO05D004762 1.4e-95 353.2 207 78.7
HanXRQChr05g0155401 Helianthus annuus HOM05D003971 ORTHO05D004762 1.4e-95 353.2 208 79.3
GSVIVG01008647001 Vitis vinifera HOM05D003971 ORTHO05D004762 1.8e-95 352.8 209 76.6
Actinidia18301 Actinidia chinensis HOM05D003971 ORTHO05D004762 4.0e-95 351.7 208 77.4
CSS0040569 Camellia sinensis var. sinensis HOM05D003971 ORTHO05D004762 4.0e-95 351.7 208 78.4
Duzib084G0567 Durio zibethinus HOM05D003971 ORTHO05D004762 4.0e-95 351.7 207 77.8
ECA246G0638 Erigeron canadensis HOM05D003971 ORTHO05D004762 4.0e-95 351.7 208 78.4
Glyma.04G201300 Glycine max HOM05D003971 ORTHO05D004762 4.0e-95 351.7 211 76.8
Medtr3g098600 Medicago truncatula HOM05D003971 ORTHO05D004762 5.2e-95 351.3 208 78.8
ClCG03G004040 Citrullus lanatus HOM05D003971 ORTHO05D004762 6.8e-95 350.9 208 78.4
Gohir.A03G056200 Gossypium hirsutum HOM05D003971 ORTHO05D004762 6.8e-95 350.9 207 78.3
Aqoxy1G00170 Aquilegia oxysepala HOM05D003971 ORTHO05D004762 1.2e-94 350.1 209 78.9
Gohir.D03G110400 Gossypium hirsutum HOM05D003971 ORTHO05D004762 1.5e-94 349.7 207 78.3
Lj1g0015188 Lotus japonicus HOM05D003971 ORTHO05D004762 1.5e-94 349.7 208 76.4
PSO384G2792 Papaver somniferum HOM05D003971 ORTHO05D004762 1.5e-94 349.7 208 78.4
TWI39G0398 Tripterygium wilfordii HOM05D003971 ORTHO05D004762 1.5e-94 349.7 209 76.1
Lsat_1_v5_gn_5_10121 Lactuca sativa HOM05D003971 ORTHO05D004762 2.6e-94 349.0 208 77.4
Sed0008211 Sechium edule HOM05D003971 ORTHO05D004762 3.4e-94 348.6 207 77.3
arahy.Tifrunner.gnm1.ann1.86AC6C Arachis hypogaea HOM05D003971 ORTHO05D004762 4.4e-94 348.2 208 76.0
arahy.Tifrunner.gnm1.ann1.9UH1TF Arachis hypogaea HOM05D003971 ORTHO05D004762 4.4e-94 348.2 208 76.0
Peaxi162Scf01168g00013 Petunia axillaris HOM05D003971 ORTHO05D004762 4.4e-94 348.2 208 77.4
CsaV3_1G009920 Cucumis sativus L. HOM05D003971 ORTHO05D004762 5.8e-94 347.8 208 77.4
AUR62009537 Chenopodium quinoa HOM05D003971 ORTHO05D004762 7.5e-94 347.4 208 76.0
AUR62041701 Chenopodium quinoa HOM05D003971 ORTHO05D004762 9.8e-94 347.1 208 76.0
Glyma.06G163900 Glycine max HOM05D003971 ORTHO05D004762 1.3e-93 346.7 211 75.4
Thecc.03G140300 Theobroma cacao HOM05D003971 ORTHO05D004762 1.3e-93 346.7 208 75.5
MELO3C002386.2 Cucumis melo HOM05D003971 ORTHO05D004762 1.7e-93 346.3 208 77.4
Haze_07098 Corylus avellana HOM05D003971 ORTHO05D004762 3.7e-93 345.1 205 79.0
MD06G1130900 Malus domestica HOM05D003971 ORTHO05D004762 3.7e-93 345.1 208 76.0
MD14G1147500 Malus domestica HOM05D003971 ORTHO05D004762 3.7e-93 345.1 208 75.5
Phvul.009G161300 Phaseolus vulgaris HOM05D003971 ORTHO05D004762 4.9e-93 344.7 208 74.5
A03p16430 Brassica napus HOM05D003971 ORTHO05D004762 6.4e-93 344.4 209 74.6
BraA03t10933Z Brassica rapa HOM05D003971 ORTHO05D004762 6.4e-93 344.4 209 74.6
AUR62041703 Chenopodium quinoa HOM05D003971 ORTHO05D004762 6.4e-93 344.4 208 75.5
CANSAT56G1634 Cannabis sativa HOM05D003971 ORTHO05D004762 8.3e-93 344.0 209 77.0
MSTRG.22849 Avicennia marina HOM05D003971 ORTHO05D004762 2.4e-92 342.4 208 75.5
VMungo1309G0830 Vigna mungo HOM05D003971 ORTHO05D004762 3.2e-92 342.0 208 74.5
COL.COLO4_37254 Corchorus olitorius HOM05D003971 ORTHO05D004762 4.1e-92 341.7 208 75.0
Lsat_1_v5_gn_4_84501 Lactuca sativa HOM05D003971 ORTHO05D004762 5.4e-92 341.3 211 73.0
PSO339G4968 Papaver somniferum HOM05D003971 ORTHO05D004762 5.4e-92 341.3 208 77.4
EL10Ac5g11286 Beta vulgaris HOM05D003971 ORTHO05D004762 7.1e-92 340.9 208 76.9
Prupe.5G142100 Prunus persica HOM05D003971 ORTHO05D004762 7.1e-92 340.9 208 75.0
Hund02509 Selenicereus undatus HOM05D003971 ORTHO05D004762 7.1e-92 340.9 208 74.0
Cc04_g05880 Coffea canephora HOM05D003971 ORTHO05D004762 1.6e-91 339.7 207 76.3
Lj9C486T6 Lonicera japonica HOM05D003971 ORTHO05D004762 1.6e-91 339.7 209 75.1
THA.LOC104825039 Tarenaya hassleriana HOM05D003971 ORTHO05D004762 2.7e-91 339.0 209 75.1
AT5G50970 Arabidopsis thaliana HOM05D003971 ORTHO05D004762 4.6e-91 338.2 209 73.7
Migut.I00618 Erythranthe guttata HOM05D003971 ORTHO05D004762 4.6e-91 338.2 208 75.0
Thhalv10013209m.g Eutrema salsugineum HOM05D003971 ORTHO05D004762 6.0e-91 337.8 209 74.2
Solyc12g042200.2 Solanum lycopersicum HOM05D003971 ORTHO05D004762 6.0e-91 337.8 208 74.5
Sopen12g021240 Solanum pennellii HOM05D003971 ORTHO05D004762 6.0e-91 337.8 208 74.5
AL8G25160 Arabidopsis lyrata HOM05D003971 ORTHO05D004762 7.8e-91 337.4 209 73.2
BcaC01g06062 Brassica carinata HOM05D003971 ORTHO05D004762 7.8e-91 337.4 209 74.6
C03p19320 Brassica napus HOM05D003971 ORTHO05D004762 7.8e-91 337.4 209 74.6
CARHR257220 Cardamine hirsuta HOM05D003971 ORTHO05D004762 1.0e-90 337.0 212 73.6
Sp6g13140 Schrenkiella parvula HOM05D003971 ORTHO05D004762 1.3e-90 336.7 209 73.2
BolC3t14318H Brassica oleracea HOM05D003971 ORTHO05D004762 1.7e-90 336.3 209 74.2
DCAR_021401 Daucus carota HOM05D003971 ORTHO05D004762 3.0e-90 335.5 208 74.5
Nitab4.5_0008403g0010 Nicotiana tabacum HOM05D003971 ORTHO05D004762 3.9e-90 335.1 208 75.0
Sabra15G0126400 Salix brachista HOM05D003971 ORTHO05D004762 3.9e-90 335.1 208 75.0
Gorai.003G116700 Gossypium raimondii HOM05D003971 ORTHO05D004762 8.6e-90 334.0 198 78.3
Nitab4.5_0002584g0020 Nicotiana tabacum HOM05D003971 ORTHO05D004762 1.1e-89 333.6 208 75.0
Aa31LG3G7450 Aethionema arabicum HOM05D003971 ORTHO05D004762 1.5e-89 333.2 209 73.7
Gohir.D07G051000 Gossypium hirsutum HOM05D003971 ORTHO05D004762 2.5e-89 332.4 208 73.1
Gohir.A07G046700 Gossypium hirsutum HOM05D003971 ORTHO05D004762 3.3e-89 332.0 207 72.5
Zm00001eb210690 Zea mays HOM05D003971 ORTHO05D004762 3.3e-89 332.0 207 72.5
Carub.0008s1099 Capsella rubella HOM05D003971 ORTHO05D004762 4.3e-89 331.6 209 72.2
DCAR_016341 Daucus carota HOM05D003971 ORTHO05D004762 9.5e-89 330.5 209 72.2
Gorai.001G054100 Gossypium raimondii HOM05D003971 ORTHO05D004762 9.5e-89 330.5 208 73.1
HPP92_011657 Vanilla planifolia HOM05D003971 ORTHO05D004762 9.5e-89 330.5 208 71.2
Sed0022051 Sechium edule HOM05D003971 ORTHO05D004762 1.2e-88 330.1 208 73.1
Oeu046606.1 Olea europaea HOM05D003971 ORTHO05D004762 1.6e-88 329.7 210 73.8
SEGI_34710 Sequoiadendron giganteum HOM05D003971 ORTHO05D004762 1.6e-88 329.7 208 71.6
TWI23G0486 Tripterygium wilfordii HOM05D003971 ORTHO05D004762 1.6e-88 329.7 210 71.9
FAN04G0277 Fragaria x ananassa HOM05D003971 ORTHO05D004762 2.1e-88 329.3 208 71.6
FAN08G0744 Fragaria x ananassa HOM05D003971 ORTHO05D004762 2.1e-88 329.3 208 71.6
FvH4_5g09480 Fragaria vesca HOM05D003971 ORTHO05D004762 2.8e-88 328.9 208 71.6
ATR0582G269 Amborella trichopoda HOM05D003971 ORTHO05D004762 3.6e-88 328.6 211 70.1
FAN13G1049 Fragaria x ananassa HOM05D003971 ORTHO05D004762 4.7e-88 328.2 208 71.6
FAN18G1571 Fragaria x ananassa HOM05D003971 ORTHO05D004762 8.1e-88 327.4 208 71.6
Hund10040 Selenicereus undatus HOM05D003971 ORTHO05D004762 1.1e-87 327.0 209 73.2
Zm00001eb064630 Zea mays HOM05D003971 ORTHO05D004762 3.1e-87 325.5 207 71.0
MELO3C026159.2 Cucumis melo HOM05D003971 ORTHO05D004762 8.9e-87 323.9 208 70.7
Lj4g0027413 Lotus japonicus HOM05D003971 ORTHO05D004762 8.9e-87 323.9 208 70.2
CsaV3_1G000070 Cucumis sativus L. HOM05D003971 ORTHO05D004762 1.2e-86 323.6 208 70.7
MBI03_g13042_MAGBIO Magnolia biondii HOM05D003971 ORTHO05D004762 2.6e-86 322.4 209 71.3
ClCG06G018370 Citrullus lanatus HOM05D003971 ORTHO05D004762 3.4e-86 322.0 208 72.1
VMungo0251G1950 Vigna mungo HOM05D000512 ORTHO05D000861 2.9e-85 318.9 208 71.2
Phvul.002G281600 Phaseolus vulgaris HOM05D003971 ORTHO05D004762 4.1e-84 315.1 208 68.8
SEGI_10226 Sequoiadendron giganteum HOM05D003971 ORTHO05D004762 3.5e-83 312.0 208 68.8
Sc22g0003380 Simmondsia chinensis HOM05D003971 ORTHO05D004762 4.6e-83 311.6 209 68.4
PGSC0003DMG400014242 Solanum tuberosum HOM05D003971 ORTHO05D004762 2.3e-82 309.3 208 68.3
TPR.G12938 Trifolium pratense HOM05D003971 ORTHO05D004762 3.0e-82 308.9 210 64.3
Sopen03g037130 Solanum pennellii HOM05D003971 ORTHO05D004762 3.3e-81 305.4 210 67.1
HPP92_028338 Vanilla planifolia HOM05D003971 ORTHO05D004762 5.6e-81 304.7 208 66.8
Medtr8g100180 Medicago truncatula HOM05D003971 ORTHO05D004762 1.2e-80 303.5 207 66.2
RcHm_v2.0_Chr7g0188721 Rosa chinensis HOM05D003971 ORTHO05D004762 2.1e-80 302.8 186 73.1
Peaxi162Scf00314g00638 Petunia axillaris HOM05D003971 ORTHO05D004762 4.0e-79 298.5 208 66.8
SHI34430 Sapria himalayana HOM05D003971 ORTHO05D004762 7.6e-78 294.3 234 59.4
Mapoly0008s0248 Marchantia polymorpha HOM05D003971 ORTHO05D004762 1.7e-77 293.1 208 64.9
Sp6g24460 Schrenkiella parvula HOM05D003971 ORTHO05D004762 6.4e-77 291.2 207 64.7
Actinidia25522 Actinidia chinensis HOM05D000512 ORTHO05D004762 8.4e-77 290.8 185 74.1
Ah.11g046910 Amaranthus hybridus HOM05D001469 ORTHO05D001648 1.9e-76 289.7 181 72.9
unitig_21.g20335 Utricularia gibba HOM05D003971 ORTHO05D004762 3.2e-76 288.9 210 62.4
CARHR192940 Cardamine hirsuta HOM05D003971 ORTHO05D004762 2.7e-75 285.8 207 62.8
AL6G31450 Arabidopsis lyrata HOM05D003971 ORTHO05D004762 1.0e-74 283.9 207 62.8
Thhalv10013007m.g Eutrema salsugineum HOM05D003971 ORTHO05D004762 1.3e-74 283.5 207 63.3
Carub.0006s1829 Capsella rubella HOM05D003971 ORTHO05D004762 2.3e-74 282.7 207 62.3
C09p56130 Brassica napus HOM05D003971 ORTHO05D004762 3.9e-74 282.0 207 62.3
BolC9t58480H Brassica oleracea HOM05D003971 ORTHO05D004762 3.9e-74 282.0 207 62.3
Manes.06G126801 Manihot esculenta HOM05D003971 ORTHO05D004762 3.9e-74 282.0 165 77.0
A10p19810 Brassica napus HOM05D003971 ORTHO05D004762 5.1e-74 281.6 207 62.3
BraA10t44057Z Brassica rapa HOM05D003971 ORTHO05D004762 5.1e-74 281.6 207 62.3
BcaC04g19398 Brassica carinata HOM05D003971 ORTHO05D004762 6.6e-74 281.2 207 61.8
BcaB08g36556 Brassica carinata HOM05D003971 ORTHO05D004762 8.7e-74 280.8 207 61.4
Aa31LG10G8100 Aethionema arabicum HOM05D003971 ORTHO05D004762 1.5e-73 280.0 208 62.0
AT5G19920 Arabidopsis thaliana HOM05D003971 ORTHO05D004762 1.9e-73 279.6 207 61.8
A02p05920 Brassica napus HOM05D003971 ORTHO05D004762 6.2e-72 274.6 207 61.8
BraA02t05544Z Brassica rapa HOM05D003971 ORTHO05D004762 6.2e-72 274.6 207 61.8
BNapus_Darmor_BZH_scaffold_38p01950 Brassica napus HOM05D003971 ORTHO05D004762 6.9e-71 271.2 207 60.4
BolC2t06996H Brassica oleracea HOM05D003971 ORTHO05D004762 6.9e-71 271.2 207 60.4
Pp3c11_18210 Physcomitrium patens HOM05D003971 ORTHO05D004762 5.4e-68 261.5 211 57.3
AagrBONN_evm.TU.Sc2ySwM_117.1595 Anthoceros agrestis HOM05D003971 ORTHO05D004762 2.1e-67 259.6 209 54.1
Cc03_g15560 Coffea canephora HOM05D003971 ORTHO05D004762 3.5e-67 258.8 209 62.7
HanXRQChr17g0565911 Helianthus annuus HOM05D003971 ORTHO05D004762 7.3e-65 251.1 169 69.2
CDE02G0369 Ceratophyllum demersum HOM05D003971 ORTHO05D004762 1.6e-59 233.4 156 71.8
TPR.G25960 Trifolium pratense HOM05D003971 ORTHO05D004762 2.7e-59 232.6 208 57.7
CBR_g3752 Chara braunii HOM05D003971 ORTHO05D004762 2.0e-54 216.5 212 50.5
Lalb_Chr12g0202501 Lupinus albus HOM05D003971 ORTHO05D004762 1.3e-50 203.8 163 59.5
Nitab4.5_0000976g0020 Nicotiana tabacum HOM05D003971 ORTHO05D004762 7.6e-46 188.0 131 67.2
Potri.015G106300 Populus trichocarpa HOM05D003971 ORTHO05D004762 7.1e-44 181.4 104 77.9
SalBow7G2108 Salvia bowleyana HOM05D003971 ORTHO05D004762 7.1e-44 181.4 115 73.0
SGA_v2.0_scaffold74G24722 Striga asiatica HOM05D003971 ORTHO05D004762 3.5e-43 179.1 113 75.2
Solyc03g118210.3 Solanum lycopersicum HOM05D003971 ORTHO05D004762 2.2e-37 159.8 102 71.6
Sc04g0000200 Simmondsia chinensis HOM05D003971 ORTHO05D004762 2.9e-37 159.5 104 65.4
Solyc03g118220.3 Solanum lycopersicum HOM05D003971 ORTHO05D004762 1.6e-35 153.7 103 66.0
CSS0006697 Camellia sinensis var. sinensis HOM05D003971 ORTHO05D004762 1.1e-33 147.5 83 79.5
Oeu012846.1 Olea europaea HOM05D003971 ORTHO05D004433 2.9e-29 132.9 117 54.7
SMO334G0050 Selaginella moellendorffii HOM05D003971 ORTHO05D004762 1.4e-28 130.6 203 37.9
RcHm_v2.0_Chr1g0373351 Rosa chinensis HOM05D003971 ORTHO05D004762 1.9e-28 130.2 88 65.9
Dinv13722 Davidia involucrata HOM05D000475 ORTHO05D000343 2.7e-27 126.3 67 83.6
Dinv23224 Davidia involucrata HOM05D000475 ORTHO05D000343 8.2e-24 114.8 65 80.0
CSS0040784 Camellia sinensis var. sinensis HOM05D003971 ORTHO05D004762 7.2e-20 101.7 64 70.3


User provided reference genes

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