Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.L00923 Eucalyptus grandis HOM05D005125 ORTHO05D006777 3.2e-256 887.9 438 100.0
Eucgr.E03516 Eucalyptus grandis HOM05D005125 ORTHO05D006777 3.3e-216 755.0 438 88.6
PGR083G1107 Punica granatum HOM05D005125 ORTHO05D006777 2.0e-189 666.0 435 75.6
GSVIVG01013360001 Vitis vinifera HOM05D005125 ORTHO05D006777 4.9e-188 661.4 427 74.7
QL02p014036 Quercus lobata HOM05D005125 ORTHO05D006777 3.9e-185 651.7 417 76.0
Cpa.g.sc26.198 Carica papaya HOM05D005125 ORTHO05D006777 1.2e-183 646.7 425 73.9
Cfa014076 Carpinus fangiana HOM05D005125 ORTHO05D006777 2.1e-183 646.0 442 73.3
CiPaw.07G138900 Carya illinoinensis HOM05D005125 ORTHO05D006777 3.6e-183 645.2 441 73.0
FvH4_2g37450 Fragaria vesca HOM05D005125 ORTHO05D006777 2.6e-181 639.0 438 71.9
Prupe.1G354500 Prunus persica HOM05D005125 ORTHO05D006777 2.6e-181 639.0 413 74.8
RcHm_v2.0_Chr6g0304271 Rosa chinensis HOM05D005125 ORTHO05D006777 7.6e-181 637.5 438 72.6
CiPaw.08G073000 Carya illinoinensis HOM05D005125 ORTHO05D006777 9.9e-181 637.1 435 72.4
MD15G1002000 Malus domestica HOM05D005125 ORTHO05D006777 1.3e-180 636.7 415 74.9
Dinv31939 Davidia involucrata HOM05D005125 ORTHO05D006777 4.9e-180 634.8 425 72.7
FAN27G2626 Fragaria x ananassa HOM05D005125 ORTHO05D006777 4.9e-180 634.8 438 71.5
TWI56G0714 Tripterygium wilfordii HOM05D005125 ORTHO05D006777 4.9e-180 634.8 408 76.0
Ca_15433_v3 Cicer arietinum L. HOM05D005125 ORTHO05D006777 1.4e-179 633.3 414 74.4
Haze_22773 Corylus avellana HOM05D005125 ORTHO05D006777 1.9e-179 632.9 386 79.0
Manes.05G134400 Manihot esculenta HOM05D005125 ORTHO05D006777 2.4e-179 632.5 422 73.5
MD08G1002400 Malus domestica HOM05D005125 ORTHO05D006777 4.2e-179 631.7 447 70.7
Ciclev10003241m.g Citrus clementina HOM05D005125 ORTHO05D006777 9.2e-179 630.6 425 72.9
Hma1.2p1_0507F.1_g168460 Hydrangea macrophylla HOM05D005125 ORTHO05D006777 3.5e-178 628.6 425 72.9
CSS0022218 Camellia sinensis var. sinensis HOM05D005125 ORTHO05D006777 4.6e-178 628.2 426 72.5
FAN20G1306 Fragaria x ananassa HOM05D005125 ORTHO05D006777 4.6e-178 628.2 438 71.0
Glyma.04G017900 Glycine max HOM05D005125 ORTHO05D006777 7.8e-178 627.5 404 74.5
Potri.005G250300 Populus trichocarpa HOM05D005125 ORTHO05D006777 7.8e-178 627.5 423 71.9
Lalb_Chr23g0265791 Lupinus albus HOM05D005125 ORTHO05D006777 1.0e-177 627.1 398 76.9
Sabra05G0193900 Salix brachista HOM05D005125 ORTHO05D006777 1.3e-177 626.7 423 72.1
Potri.002G010800 Populus trichocarpa HOM05D005125 ORTHO05D006777 3.9e-177 625.2 400 75.2
THA.LOC104813172 Tarenaya hassleriana HOM05D005125 ORTHO05D006777 3.9e-177 625.2 423 71.9
Duzib093G0577 Durio zibethinus HOM05D005125 ORTHO05D006777 5.1e-177 624.8 430 72.6
ClCG08G009440 Citrullus lanatus HOM05D005125 ORTHO05D006777 1.5e-176 623.2 414 74.6
FAN15G0126 Fragaria x ananassa HOM05D005125 ORTHO05D006777 1.5e-176 623.2 452 69.5
Duzib116G0840 Durio zibethinus HOM05D005125 ORTHO05D006777 5.6e-176 621.3 408 74.3
Manes.18G005400 Manihot esculenta HOM05D005125 ORTHO05D006777 9.6e-176 620.5 399 74.9
Thecc.08G058900 Theobroma cacao HOM05D005125 ORTHO05D006777 3.6e-175 618.6 408 73.8
Glyma.06G018200 Glycine max HOM05D005125 ORTHO05D006777 8.1e-175 617.5 404 73.8
Medtr3g115290 Medicago truncatula HOM05D005125 ORTHO05D006777 8.1e-175 617.5 433 71.1
Gorai.002G117000 Gossypium raimondii HOM05D005125 ORTHO05D006777 1.8e-174 616.3 430 70.5
Lj1g0005535 Lotus japonicus HOM05D005125 ORTHO05D006777 4.0e-174 615.1 425 73.2
Gohir.D01G091900 Gossypium hirsutum HOM05D005125 ORTHO05D006777 5.3e-174 614.8 430 70.2
Atru.chr13.135 Acer truncatum HOM05D005125 ORTHO05D006777 6.9e-174 614.4 395 75.7
Gohir.A01G105600 Gossypium hirsutum HOM05D005125 ORTHO05D006777 6.9e-174 614.4 430 70.7
TAR625G0173 Trochodendron aralioides HOM05D005125 ORTHO05D006777 1.5e-173 613.2 406 72.4
Actinidia37922 Actinidia chinensis HOM05D005125 ORTHO05D006777 2.0e-173 612.8 409 73.3
CsaV3_6G031580 Cucumis sativus L. HOM05D005125 ORTHO05D006777 2.0e-173 612.8 430 71.4
CANSAT25G1708 Cannabis sativa HOM05D005125 ORTHO05D006777 7.6e-173 610.9 402 74.1
Lalb_Chr11g0061631 Lupinus albus HOM05D005125 ORTHO05D006777 1.3e-172 610.1 433 71.1
BcaC04g22006 Brassica carinata HOM05D005125 ORTHO05D006777 2.9e-172 609.0 437 68.2
C09p24930 Brassica napus HOM05D005125 ORTHO05D006777 2.9e-172 609.0 437 68.2
Rhsim06G0007400 Rhododendron simsii HOM05D005125 ORTHO05D006777 6.4e-172 607.8 400 73.5
Cc10_g00670 Coffea canephora HOM05D005125 ORTHO05D006777 1.9e-171 606.3 426 69.7
Sopen04g035960 Solanum pennellii HOM05D005125 ORTHO05D006777 3.2e-171 605.5 426 69.5
EL10Ac1g01960 Beta vulgaris HOM05D005125 ORTHO05D006777 7.1e-171 604.4 396 73.2
A09p19570 Brassica napus HOM05D005125 ORTHO05D006777 7.1e-171 604.4 435 68.0
BraA09t37570Z Brassica rapa HOM05D005125 ORTHO05D006777 1.2e-170 603.6 435 68.0
BcaB07g31085 Brassica carinata HOM05D005125 ORTHO05D006777 2.7e-170 602.4 430 68.6
Solyc04g082340.3 Solanum lycopersicum HOM05D005125 ORTHO05D006777 2.7e-170 602.4 426 69.2
Carub.0008s0686 Capsella rubella HOM05D005125 ORTHO05D006777 4.6e-170 601.7 413 70.2
TPR.G38202 Trifolium pratense HOM05D005125 ORTHO05D006777 4.6e-170 601.7 400 72.2
AL8G19280 Arabidopsis lyrata HOM05D005125 ORTHO05D006777 1.0e-169 600.5 417 69.5
CARHR284930 Cardamine hirsuta HOM05D005125 ORTHO05D006777 5.1e-169 598.2 423 67.8
Phvul.009G010800 Phaseolus vulgaris HOM05D005125 ORTHO05D006777 5.1e-169 598.2 398 73.4
Aa31LG9G12440 Aethionema arabicum HOM05D005125 ORTHO05D006777 6.6e-169 597.8 427 68.1
Lj4A11T69 Lonicera japonica HOM05D005125 ORTHO05D006777 3.3e-168 595.5 401 72.6
Peaxi162Scf00893g00037 Petunia axillaris HOM05D005125 ORTHO05D006777 3.3e-168 595.5 419 70.2
AT5G42320 Arabidopsis thaliana HOM05D005125 ORTHO05D006777 5.6e-168 594.7 417 69.1
Aqoxy6G01728 Aquilegia oxysepala HOM05D005125 ORTHO05D006777 9.6e-168 594.0 399 71.7
Nitab4.5_0000588g0110 Nicotiana tabacum HOM05D005125 ORTHO05D006777 2.1e-167 592.8 425 68.9
arahy.Tifrunner.gnm1.ann1.1X7ZBM Arachis hypogaea HOM05D005125 ORTHO05D006777 6.2e-167 591.3 411 71.5
Sp7g08250 Schrenkiella parvula HOM05D005125 ORTHO05D006777 5.3e-166 588.2 412 68.7
PGSC0003DMG400009979 Solanum tuberosum HOM05D005125 ORTHO05D006777 1.2e-165 587.0 411 69.3
arahy.Tifrunner.gnm1.ann1.VXG7Z6 Arachis hypogaea HOM05D005125 ORTHO05D006777 2.0e-165 586.3 411 71.0
Migut.C00961 Erythranthe guttata HOM05D005125 ORTHO05D006777 3.4e-165 585.5 438 66.2
PSO541G3228 Papaver somniferum HOM05D005125 ORTHO05D006777 9.9e-165 583.9 410 71.0
vmacro21811 Vaccinium macrocarpon HOM05D005125 ORTHO05D006777 2.2e-164 582.8 424 68.4
PSO675G8084 Papaver somniferum HOM05D005125 ORTHO05D006777 3.8e-164 582.0 430 68.6
Ah.00g000800 Amaranthus hybridus HOM05D005125 ORTHO05D006777 6.4e-164 581.3 409 69.4
MD12G1003300 Malus domestica HOM05D005125 ORTHO05D006777 8.4e-164 580.9 494 62.3
Sed0024407 Sechium edule HOM05D005125 ORTHO05D006777 2.4e-163 579.3 390 73.6
AUR62036871 Chenopodium quinoa HOM05D005125 ORTHO05D006777 1.2e-162 577.0 391 70.1
Rhsim07G0254900 Rhododendron simsii HOM05D005125 ORTHO05D006777 1.2e-162 577.0 387 72.1
Lsat_1_v5_gn_2_5181 Lactuca sativa HOM05D005125 ORTHO05D006777 2.1e-162 576.2 423 66.9
EL10Ac7g16836 Beta vulgaris HOM05D005125 ORTHO05D006777 2.7e-162 575.9 392 71.4
Actinidia28601 Actinidia chinensis HOM05D005125 ORTHO05D006777 2.3e-161 572.8 420 68.3
SalBow7G1095 Salvia bowleyana HOM05D005125 ORTHO05D006777 2.3e-161 572.8 445 64.7
HanXRQChr06g0183991 Helianthus annuus HOM05D005125 ORTHO05D006777 3.9e-161 572.0 404 68.8
CAN.G311.115 Capsicum annuum HOM05D005125 ORTHO05D006777 1.1e-160 570.5 383 72.3
Duzib041G0467 Durio zibethinus HOM05D005125 ORTHO05D006777 4.3e-160 568.5 430 66.7
ECA238G0848 Erigeron canadensis HOM05D005125 ORTHO05D006777 5.3e-158 561.6 377 71.9
vmacro04403 Vaccinium macrocarpon HOM05D005125 ORTHO05D006777 6.9e-158 561.2 421 67.0
SGA_v2.0_scaffold108G30863 Striga asiatica HOM05D005125 ORTHO05D006777 1.7e-156 556.6 437 63.8
Lsat_1_v5_gn_8_26201 Lactuca sativa HOM05D005125 ORTHO05D006777 1.1e-155 553.9 432 63.2
Hund05112 Selenicereus undatus HOM05D005125 ORTHO05D006777 1.0e-153 547.4 379 71.2
Ca_15458_v3 Cicer arietinum L. HOM05D005125 ORTHO05D006777 9.6e-152 540.8 338 76.0
Nn5g30942 Nelumbo nucifera HOM05D005125 ORTHO05D006777 4.9e-148 528.5 356 71.6
MBI08_g41521_MAGBIO Magnolia biondii HOM05D005125 ORTHO05D006777 1.9e-147 526.6 400 65.5
VMungo1309G1587 Vigna mungo HOM05D005125 ORTHO05D006777 3.5e-146 522.3 351 72.4
Thhalv10027780m.g Eutrema salsugineum HOM05D005125 ORTHO05D006777 6.1e-146 521.5 333 74.5
unitig_747.g21516 Utricularia gibba HOM05D005125 ORTHO05D006777 6.1e-146 521.5 423 59.6
DCAR_016769 Daucus carota HOM05D005125 ORTHO05D006777 1.8e-142 510.0 382 64.9
MELO3C026539.2 Cucumis melo HOM05D005125 ORTHO05D006777 2.0e-141 506.5 333 73.9
HPP92_007117 Vanilla planifolia HOM05D005125 ORTHO05D006777 5.9e-141 505.0 411 62.3
Zm00001eb209310 Zea mays HOM05D005125 ORTHO05D006777 1.5e-136 490.3 419 60.1
Os02g0119300 Oryza sativa ssp. japonica HOM05D005125 ORTHO05D006777 1.3e-135 487.3 393 61.1
ATR0661G305 Amborella trichopoda HOM05D005125 ORTHO05D006777 6.3e-135 485.0 404 60.1
Sc15g0004430 Simmondsia chinensis HOM05D005125 ORTHO05D006777 5.3e-134 481.9 332 71.7
CSS0019336 Camellia sinensis var. sinensis HOM05D005125 ORTHO05D006777 1.9e-131 473.4 302 75.2
CDE05G1644 Ceratophyllum demersum HOM05D005125 ORTHO05D006777 2.1e-130 469.9 383 61.4
Gorai.009G188100 Gossypium raimondii HOM05D005125 ORTHO05D006777 2.0e-128 463.4 311 68.8
SHI07997 Sapria himalayana HOM05D005125 ORTHO05D006777 1.7e-127 460.3 426 57.0
Gohir.A05G179600 Gossypium hirsutum HOM05D005125 ORTHO05D006777 3.7e-127 459.1 311 68.2
Gohir.D05G182800 Gossypium hirsutum HOM05D005125 ORTHO05D006777 4.8e-127 458.8 311 67.8
COL.COLO4_06662 Corchorus olitorius HOM05D005125 ORTHO05D006777 1.0e-116 424.5 283 73.1
Dinv05534 Davidia involucrata HOM05D005125 ORTHO05D006777 4.0e-113 412.5 280 72.1
Psat5g159120 Pisum sativum HOM05D005125 ORTHO05D006777 5.5e-107 392.1 245 75.5
AagrBONN_evm.TU.Sc2ySwM_362.2863 Anthoceros agrestis HOM05D005125 ORTHO05D006777 2.2e-103 380.2 329 55.9
Mapoly0045s0063 Marchantia polymorpha HOM05D005125 ORTHO05D006777 1.5e-99 367.5 324 54.3
SMO358G0159 Selaginella moellendorffii HOM05D005125 ORTHO05D006777 3.5e-93 346.3 277 59.2
Pp3c20_16570 Physcomitrium patens HOM05D005125 ORTHO05D006777 7.3e-91 338.6 406 44.3
ECA238G3411 Erigeron canadensis HOM05D005125 ORTHO05D006777 2.6e-88 330.1 208 72.6
BcaNung05255 Brassica carinata HOM05D005125 ORTHO05D006777 9.2e-78 295.0 244 62.3
Cre11.g467631 Chlamydomonas reinhardtii HOM05D005125 ORTHO05D006777 3.4e-72 276.6 333 43.2
SGA_v2.0_scaffold195G40773 Striga asiatica HOM05D005125 ORTHO05D006777 4.1e-70 269.6 201 66.2
MD00G1076900 Malus domestica HOM05D005125 ORTHO05D006777 3.5e-69 266.5 230 60.4
PRCOL_00006814 Prasinoderma coloniale HOM05D005125 ORTHO05D006777 9.6e-67 258.5 228 54.4
SEGI_03459 Sequoiadendron giganteum HOM05D005125 ORTHO05D006777 1.2e-66 258.1 195 63.1
BcaNung05254 Brassica carinata HOM05D005125 ORTHO05D006777 2.0e-64 250.8 177 67.8
Oeu056206.2 Olea europaea HOM05D005125 ORTHO05D006777 1.8e-57 227.6 145 73.8
BolC9t55384H Brassica oleracea HOM05D005125 ORTHO05D006777 1.4e-49 201.4 180 58.9
ECA233G3085 Erigeron canadensis HOM05D000006 ORTHO05D000001 1.1e-41 175.3 120 65.0
SEGI_37631 Sequoiadendron giganteum HOM05D005125 ORTHO05D006777 1.4e-38 164.9 110 64.5
MCO16G405 Micromonas commoda HOM05D005125 ORTHO05D006777 3.9e-36 156.8 140 51.4
SGA_v2.0_scaffold83G26467 Striga asiatica HOM05D005125 ORTHO05D006777 4.3e-35 153.3 140 57.9
Cc00_g07920 Coffea canephora HOM05D005125 ORTHO05D006777 5.0e-31 139.8 157 52.9
PRCOL_00005708 Prasinoderma coloniale HOM05D005125 ORTHO05D034490 5.0e-31 139.8 399 29.1
Sc15g0004440 Simmondsia chinensis HOM05D005125 ORTHO05D006777 4.2e-30 136.7 122 60.7
ECA238G2450 Erigeron canadensis HOM05D000240 ORTHO05D002721 5.1e-28 129.8 182 41.2
Cre16.g668950 Chlamydomonas reinhardtii HOM05D005125 ORTHO05D034490 8.7e-28 129.0 295 32.2
Lsat_1_v5_gn_1_87521 Lactuca sativa HOM05D005125 ORTHO05D007904 1.0e-20 105.5 64 71.9
Oeu035185.1 Olea europaea HOM05D005125 ORTHO05D006777 1.0e-20 105.5 94 60.6
TPR.G33884 Trifolium pratense HOM05D005125 ORTHO05D006777 5.9e-16 89.7 52 73.1
Cc10_g14360 Coffea canephora HOM05D005125 ORTHO05D006777 1.4e-14 85.1 58 67.2
ECA233G5321 Erigeron canadensis HOM05D000003 ORTHO05D000004 8.8e-12 75.9 74 51.4
C04p25390 Brassica napus HOM05D005125 ORTHO05D041222 2.9e-07 60.8 76 43.4
BolC4t24047H Brassica oleracea HOM05D005125 ORTHO05D041222 2.9e-07 60.8 76 43.4


User provided reference genes

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