Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.L00901 Eucalyptus grandis HOM05D005519 ORTHO05D006423 9.4e-50 200.3 134 100.0
Gohir.A05G246000 Gossypium hirsutum HOM05D005519 ORTHO05D006423 2.7e-20 102.4 147 64.6
Glyma.10G222100 Glycine max HOM05D005519 ORTHO05D006423 6.0e-20 101.3 147 48.3
Sabra02G0051900 Salix brachista HOM05D005519 ORTHO05D006423 7.8e-20 100.9 143 65.7
Dinv41044 Davidia involucrata HOM05D005519 ORTHO05D006423 2.3e-19 99.4 115 71.3
Manes.02G182800 Manihot esculenta HOM05D005519 ORTHO05D006423 5.1e-19 98.2 149 61.7
Phvul.007G083000 Phaseolus vulgaris HOM05D005519 ORTHO05D006423 5.1e-19 98.2 153 47.1
Glyma.20G169500 Glycine max HOM05D005519 ORTHO05D006423 8.6e-19 97.4 147 46.9
Potri.005G196100 Populus trichocarpa HOM05D005519 ORTHO05D006423 1.1e-18 97.1 149 60.4
VMungo0464G1678 Vigna mungo HOM05D005519 ORTHO05D006423 2.5e-18 95.9 149 62.4
Duzib116G0927 Durio zibethinus HOM05D005519 ORTHO05D006423 3.3e-18 95.5 138 55.8
Hma1.2p1_0358F.1_g134710 Hydrangea macrophylla HOM05D005519 ORTHO05D006423 5.6e-18 94.7 150 52.7
VMungo0720G0436 Vigna mungo HOM05D005519 ORTHO05D006423 7.3e-18 94.4 150 51.3
Gohir.D05G247500 Gossypium hirsutum HOM05D005519 ORTHO05D006423 9.5e-18 94.0 143 65.0
Potri.002G065000 Populus trichocarpa HOM05D005519 ORTHO05D006423 9.5e-18 94.0 147 58.5
Duzib093G1843 Durio zibethinus HOM05D005519 ORTHO05D006423 1.2e-17 93.6 136 66.9
MD05G1032800 Malus domestica HOM05D005519 ORTHO05D006423 1.2e-17 93.6 146 59.6
Dinv25895 Davidia involucrata HOM05D005519 ORTHO05D006423 2.1e-17 92.8 143 60.8
Manes.18G094400 Manihot esculenta HOM05D005519 ORTHO05D006423 2.1e-17 92.8 150 60.0
Glyma.02G079400 Glycine max HOM05D005519 ORTHO05D006423 2.8e-17 92.4 143 47.6
Gorai.009G258300 Gossypium raimondii HOM05D005519 ORTHO05D006423 2.8e-17 92.4 143 64.3
MSTRG.25301 Avicennia marina HOM05D005519 ORTHO05D006423 4.7e-17 91.7 134 67.2
Lalb_Chr03g0035541 Lupinus albus HOM05D005519 ORTHO05D006423 6.2e-17 91.3 146 43.8
FAN27G0467 Fragaria x ananassa HOM05D005519 ORTHO05D006423 8.1e-17 90.9 142 54.9
Rhsim11G0087200 Rhododendron simsii HOM05D005519 ORTHO05D006423 8.1e-17 90.9 112 67.9
Thecc.08G158600 Theobroma cacao HOM05D005519 ORTHO05D006423 8.1e-17 90.9 148 62.8
Ca_10667_v3 Cicer arietinum L. HOM05D005519 ORTHO05D006423 1.1e-16 90.5 154 42.9
Cc10_g15180 Coffea canephora HOM05D005519 ORTHO05D006423 2.3e-16 89.4 145 60.7
Cpa.g.sc49.79 Carica papaya HOM05D005519 ORTHO05D006423 4.0e-16 88.6 148 58.8
Nitab4.5_0002812g0030 Nicotiana tabacum HOM05D005519 ORTHO05D006423 4.0e-16 88.6 132 58.3
Cfa018287 Carpinus fangiana HOM05D005519 ORTHO05D006423 5.2e-16 88.2 165 50.3
Glyma.16G163800 Glycine max HOM05D005519 ORTHO05D006423 5.2e-16 88.2 138 47.1
CiPaw.15G012900 Carya illinoinensis HOM05D005519 ORTHO05D006423 6.8e-16 87.8 135 53.3
Lsat_1_v5_gn_9_42101 Lactuca sativa HOM05D005519 ORTHO05D006423 6.8e-16 87.8 134 57.5
Phvul.004G091300 Phaseolus vulgaris HOM05D005519 ORTHO05D006423 6.8e-16 87.8 144 45.8
PGR042G3808 Punica granatum HOM05D005519 ORTHO05D006423 6.8e-16 87.8 135 58.5
Sopen04g027910 Solanum pennellii HOM05D005519 ORTHO05D006423 1.2e-15 87.0 133 57.9
FvH4_2g13070 Fragaria vesca HOM05D005519 ORTHO05D006423 1.5e-15 86.7 143 57.3
Lj2g0026694 Lotus japonicus HOM05D005519 ORTHO05D006423 1.5e-15 86.7 139 57.6
Sabra05G0149500 Salix brachista HOM05D005519 ORTHO05D006423 1.5e-15 86.7 151 58.3
Hund30143 Selenicereus undatus HOM05D005519 ORTHO05D006423 1.5e-15 86.7 151 57.0
PGSC0003DMG400025068 Solanum tuberosum HOM05D005519 ORTHO05D006423 1.5e-15 86.7 134 59.0
TWI32G0061 Tripterygium wilfordii HOM05D005519 ORTHO05D006423 1.5e-15 86.7 152 44.1
vmacro01488 Vaccinium macrocarpon HOM05D005519 ORTHO05D006423 2.6e-15 85.9 138 54.3
Nitab4.5_0000872g0010 Nicotiana tabacum HOM05D005519 ORTHO05D006423 3.4e-15 85.5 133 57.9
Nitab4.5_0001103g0040 Nicotiana tabacum HOM05D005519 ORTHO05D006423 3.4e-15 85.5 136 54.4
Peaxi162Scf00360g00028 Petunia axillaris HOM05D005519 ORTHO05D006423 3.4e-15 85.5 125 56.0
Sed0015682 Sechium edule HOM05D005519 ORTHO05D006423 3.4e-15 85.5 114 61.4
CAN.G495.8 Capsicum annuum HOM05D005519 ORTHO05D006423 5.8e-15 84.7 132 57.6
Migut.N03201 Erythranthe guttata HOM05D005519 ORTHO05D006423 5.8e-15 84.7 125 60.8
Haze_17800 Corylus avellana HOM05D005519 ORTHO05D006423 7.6e-15 84.3 115 69.6
DCAR_001160 Daucus carota HOM05D005519 ORTHO05D006423 7.6e-15 84.3 134 50.0
Peaxi162Scf00160g01746 Petunia axillaris HOM05D005519 ORTHO05D006423 7.6e-15 84.3 132 55.3
Prupe.8G039900 Prunus persica HOM05D005519 ORTHO05D006423 7.6e-15 84.3 148 56.1
unitig_26.g9895 Utricularia gibba HOM05D005519 ORTHO05D006423 7.6e-15 84.3 126 51.6
Lj7A382T71 Lonicera japonica HOM05D005519 ORTHO05D006423 9.9e-15 84.0 132 54.5
Actinidia17771 Actinidia chinensis HOM05D005519 ORTHO05D006423 1.3e-14 83.6 109 50.5
TAR381G0167 Trochodendron aralioides HOM05D005519 ORTHO05D006423 1.3e-14 83.6 142 50.0
Oeu051280.1 Olea europaea HOM05D005519 ORTHO05D006423 1.7e-14 83.2 140 60.7
QL02p037831 Quercus lobata HOM05D005519 ORTHO05D006423 2.2e-14 82.8 157 47.8
CANSAT25G1666 Cannabis sativa HOM05D005519 ORTHO05D006423 2.9e-14 82.4 152 42.1
Psat6g190880 Pisum sativum HOM05D005519 ORTHO05D006423 2.9e-14 82.4 146 43.2
TWI34G0476 Tripterygium wilfordii HOM05D005519 ORTHO05D006423 3.7e-14 82.0 148 48.6
RcHm_v2.0_Chr6g0274331 Rosa chinensis HOM05D005519 ORTHO05D006423 4.9e-14 81.6 144 52.8
arahy.Tifrunner.gnm1.ann1.8F5AL7 Arachis hypogaea HOM05D005519 ORTHO05D006423 6.4e-14 81.3 149 48.3
arahy.Tifrunner.gnm1.ann1.SKG6R6 Arachis hypogaea HOM05D005519 ORTHO05D006423 6.4e-14 81.3 135 52.6
Nitab4.5_0000099g0170 Nicotiana tabacum HOM05D005519 ORTHO05D006423 6.4e-14 81.3 130 58.5
Lj5g0019555 Lotus japonicus HOM05D005519 ORTHO05D006423 8.4e-14 80.9 153 49.0
Solyc04g071930.4 Solanum lycopersicum HOM05D005519 ORTHO05D006423 8.4e-14 80.9 130 58.5
CiPaw.16G008800 Carya illinoinensis HOM05D005519 ORTHO05D006423 1.1e-13 80.5 150 51.3
MD10G1033800 Malus domestica HOM05D005519 ORTHO05D006423 1.1e-13 80.5 146 56.2
ClCG08G008840 Citrullus lanatus HOM05D005519 ORTHO05D006423 1.4e-13 80.1 114 64.0
Nn5g28816 Nelumbo nucifera HOM05D005519 ORTHO05D006423 1.4e-13 80.1 145 57.2
AL1G48440 Arabidopsis lyrata HOM05D005519 ORTHO05D006423 3.2e-13 79.0 119 52.9
FAN24G1125 Fragaria x ananassa HOM05D003947 ORTHO05D004614 3.2e-13 79.0 141 56.0
Medtr1g098280 Medicago truncatula HOM05D005519 ORTHO05D006423 3.2e-13 79.0 153 45.1
Gohir.D02G068600 Gossypium hirsutum HOM05D005519 ORTHO05D006423 4.1e-13 78.6 145 51.0
Gorai.005G077500 Gossypium raimondii HOM05D005519 ORTHO05D006423 4.1e-13 78.6 141 54.6
PGSC0003DMG400018793 Solanum tuberosum HOM05D005519 ORTHO05D006423 4.1e-13 78.6 128 44.5
Migut.C00964 Erythranthe guttata HOM05D005519 ORTHO05D006423 5.4e-13 78.2 129 52.7
TPR.G17016 Trifolium pratense HOM05D005519 ORTHO05D006423 5.4e-13 78.2 151 49.7
FAN15G1092 Fragaria x ananassa HOM05D003947 ORTHO05D004614 7.1e-13 77.8 139 56.8
Lsat_1_v5_gn_6_101660 Lactuca sativa HOM05D005519 ORTHO05D006423 7.1e-13 77.8 133 51.1
Lalb_Chr19g0130091 Lupinus albus HOM05D005519 ORTHO05D006423 9.2e-13 77.4 148 42.6
Sc26g0002910 Simmondsia chinensis HOM05D005519 ORTHO05D006423 1.2e-12 77.0 138 52.9
THA.LOC104806763 Tarenaya hassleriana HOM05D005519 ORTHO05D006423 1.2e-12 77.0 149 53.7
SGA_v2.0_scaffold108G30869 Striga asiatica HOM05D005519 ORTHO05D006423 1.6e-12 76.6 97 58.8
AT1G34000 Arabidopsis thaliana HOM05D005519 ORTHO05D006423 2.7e-12 75.9 146 49.3
Ciclev10002625m.g Citrus clementina HOM05D005519 ORTHO05D006423 2.7e-12 75.9 136 58.8
HPP92_000679 Vanilla planifolia HOM05D005519 ORTHO05D006423 2.7e-12 75.9 125 47.2
Thhalv10008704m.g Eutrema salsugineum HOM05D005519 ORTHO05D006423 3.5e-12 75.5 114 60.5
THA.LOC104825113 Tarenaya hassleriana HOM05D005519 ORTHO05D006423 4.6e-12 75.1 126 58.7
Aa31LG6G8220 Aethionema arabicum HOM05D005519 ORTHO05D006423 6.0e-12 74.7 142 57.7
MELO3C029825.2 Cucumis melo HOM05D005519 ORTHO05D006423 6.0e-12 74.7 96 70.8
Nn1g06007 Nelumbo nucifera HOM05D005519 ORTHO05D006423 6.0e-12 74.7 144 60.4
Sed0018725 Sechium edule HOM05D005519 ORTHO05D006423 6.0e-12 74.7 131 42.7
Ah.05g168160 Amaranthus hybridus HOM05D005519 ORTHO05D006423 7.8e-12 74.3 141 51.1
Solyc12g056620.2 Solanum lycopersicum HOM05D005519 ORTHO05D006423 7.8e-12 74.3 125 43.2
CSS0002205 Camellia sinensis var. sinensis HOM05D005519 ORTHO05D006423 1.3e-11 73.6 139 51.8
QL02p038173 Quercus lobata HOM05D005519 ORTHO05D006423 1.3e-11 73.6 159 50.3
CAN.G26.8 Capsicum annuum HOM05D005519 ORTHO05D006423 1.7e-11 73.2 138 56.5
CDE04G2354 Ceratophyllum demersum HOM05D005519 ORTHO05D006423 1.7e-11 73.2 144 45.8
Sopen12g029280 Solanum pennellii HOM05D005519 ORTHO05D006423 1.7e-11 73.2 127 42.5
Lj4A703G50 Lonicera japonica HOM05D005519 ORTHO05D006423 2.3e-11 72.8 108 62.0
MBI04_g08940_MAGBIO Magnolia biondii HOM05D005519 ORTHO05D006423 2.3e-11 72.8 96 66.7
MSTRG.1105 Avicennia marina HOM05D000084 ORTHO05D006423 3.0e-11 72.4 137 54.0
BcaB04g17909 Brassica carinata HOM05D005519 ORTHO05D006423 3.0e-11 72.4 118 55.1
Sp1g29260 Schrenkiella parvula HOM05D005519 ORTHO05D006423 5.1e-11 71.6 115 56.5
Carub.0001s3208 Capsella rubella HOM05D005519 ORTHO05D006423 6.6e-11 71.2 149 49.0
CsaV3_6G005050 Cucumis sativus L. HOM05D005519 ORTHO05D006423 8.6e-11 70.9 148 48.6
Atru.chr13.2018 Acer truncatum HOM05D005519 ORTHO05D006423 2.5e-10 69.3 151 53.0
BolC8t47881H Brassica oleracea HOM05D005519 ORTHO05D006423 5.6e-10 68.2 138 55.8
BcaC08g43825 Brassica carinata HOM05D005519 ORTHO05D006423 9.6e-10 67.4 140 47.1
A08p08390 Brassica napus HOM05D005519 ORTHO05D006423 9.6e-10 67.4 138 50.7
BolC6t36346H Brassica oleracea HOM05D005519 ORTHO05D006423 9.6e-10 67.4 140 47.1
BraA08t32855Z Brassica rapa HOM05D005519 ORTHO05D006423 9.6e-10 67.4 138 50.7
BraA09t38789Z Brassica rapa HOM05D005519 ORTHO05D006423 1.6e-09 66.6 145 50.3
CSS0025090 Camellia sinensis var. sinensis HOM05D005519 ORTHO05D006423 2.1e-09 66.2 42 76.2
ECA246G0665 Erigeron canadensis HOM05D003947 ORTHO05D006423 4.7e-09 65.1 34 88.2
C06p12090 Brassica napus HOM05D005519 ORTHO05D006423 6.2e-09 64.7 140 53.6
PSO541G5828 Papaver somniferum HOM05D005519 ORTHO05D006423 6.2e-09 64.7 140 32.9
ATR0580G316 Amborella trichopoda HOM05D005519 ORTHO05D006423 8.1e-09 64.3 106 56.6
BcaB07g33022 Brassica carinata HOM05D005519 ORTHO05D006423 8.1e-09 64.3 136 52.9
HanXRQChr11g0320251 Helianthus annuus HOM05D005519 ORTHO05D006423 1.1e-08 63.9 125 48.8
A09p32470 Brassica napus HOM05D005519 ORTHO05D006423 1.4e-08 63.5 143 51.0
GSVIVG01034578001 Vitis vinifera HOM05D005519 ORTHO05D006423 1.8e-08 63.2 42 73.8
AUR62026639 Chenopodium quinoa HOM05D003947 ORTHO05D004614 2.4e-08 62.8 40 77.5
Zm00001eb357520 Zea mays HOM05D005519 ORTHO05D006423 5.2e-08 61.6 147 46.3
Zm00001eb160790 Zea mays HOM05D005519 ORTHO05D006423 6.8e-08 61.2 139 37.4
PSO675G0400 Papaver somniferum HOM05D005519 ORTHO05D006423 8.9e-08 60.8 141 45.4
A05p24090 Brassica napus HOM05D011378 ORTHO05D006423 5.8e-07 58.2 40 70.0
BraA05t21288Z Brassica rapa HOM05D003947 ORTHO05D006423 5.8e-07 58.2 40 70.0
CARHR033380 Cardamine hirsuta HOM05D005519 ORTHO05D006423 9.9e-07 57.4 135 51.9


User provided reference genes

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