Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.L00810 Eucalyptus grandis HOM05D005420 ORTHO05D006524 1.9e-110 402.5 203 100.0
Eucgr.H01440 Eucalyptus grandis HOM05D005420 ORTHO05D006524 1.5e-94 349.7 203 89.2
Eucgr.H01455 Eucalyptus grandis HOM05D005420 ORTHO05D006524 2.6e-91 339.0 175 97.7
QL10p064332 Quercus lobata HOM05D005420 ORTHO05D006524 2.9e-42 176.0 185 55.7
Dinv24753 Davidia involucrata HOM05D005420 ORTHO05D006524 6.4e-42 174.9 172 57.6
Prupe.7G269700 Prunus persica HOM05D005420 ORTHO05D006524 8.4e-42 174.5 174 59.8
CiPaw.02G124600 Carya illinoinensis HOM05D005420 ORTHO05D006524 1.2e-40 170.6 180 57.2
MD00G1087500 Malus domestica HOM05D005420 ORTHO05D006524 3.5e-40 169.1 173 56.6
MD15G1143300 Malus domestica HOM05D005420 ORTHO05D006524 3.5e-40 169.1 182 56.0
Ciclev10012405m.g Citrus clementina HOM05D005420 ORTHO05D006524 2.3e-39 166.4 182 55.5
Atru.chr12.1712 Acer truncatum HOM05D005420 ORTHO05D006524 8.7e-39 164.5 187 55.1
TAR636G0539 Trochodendron aralioides HOM05D005420 ORTHO05D006524 2.1e-37 159.8 177 52.5
Thecc.05G186000 Theobroma cacao HOM05D005420 ORTHO05D006524 2.8e-37 159.5 172 57.0
Duzib177G0155 Durio zibethinus HOM05D005420 ORTHO05D006524 3.7e-37 159.1 172 57.0
Manes.12G003300 Manihot esculenta HOM05D005420 ORTHO05D006524 1.1e-36 157.5 123 67.5
CANSAT56G1087 Cannabis sativa HOM05D005420 ORTHO05D006524 2.4e-36 156.4 188 51.6
FvH4_1g00160 Fragaria vesca HOM05D005420 ORTHO05D006524 3.1e-36 156.0 174 52.3
FAN28G0609 Fragaria x ananassa HOM05D005420 ORTHO05D006524 3.1e-36 156.0 174 52.3
RcHm_v2.0_Chr2g0084451 Rosa chinensis HOM05D005420 ORTHO05D006524 3.1e-36 156.0 178 55.1
CSS0017727 Camellia sinensis var. sinensis HOM05D005420 ORTHO05D006524 5.3e-36 155.2 111 71.2
FAN26G3138 Fragaria x ananassa HOM05D005420 ORTHO05D006524 9.0e-36 154.5 174 51.7
MSTRG.24552 Avicennia marina HOM05D005420 ORTHO05D006524 1.2e-35 154.1 103 72.8
Potri.013G084300 Populus trichocarpa HOM05D005420 ORTHO05D006524 1.2e-35 154.1 169 53.8
Sabra13G0078900 Salix brachista HOM05D005420 ORTHO05D006524 2.6e-35 152.9 173 54.9
Lj4g0016379 Lotus japonicus HOM05D005420 ORTHO05D006524 3.4e-35 152.5 145 58.6
Cfa008513 Carpinus fangiana HOM05D005420 ORTHO05D006524 5.8e-35 151.8 99 75.8
Gohir.A02G106300 Gossypium hirsutum HOM05D005420 ORTHO05D006524 5.8e-35 151.8 172 52.3
TWI36G1305 Tripterygium wilfordii HOM05D005420 ORTHO05D006524 5.8e-35 151.8 170 52.9
Gohir.D03G071700 Gossypium hirsutum HOM05D005420 ORTHO05D006524 1.7e-34 150.2 172 53.5
Gorai.003G088300 Gossypium raimondii HOM05D005420 ORTHO05D006524 2.2e-34 149.8 172 53.5
PSO675G2924 Papaver somniferum HOM05D005420 ORTHO05D006524 2.2e-34 149.8 170 52.4
PSO732G0217 Papaver somniferum HOM05D005420 ORTHO05D006524 2.2e-34 149.8 109 67.0
SalBow3G4646 Salvia bowleyana HOM05D005420 ORTHO05D006524 3.8e-34 149.1 173 52.0
TAR365G1242 Trochodendron aralioides HOM05D005420 ORTHO05D006524 3.8e-34 149.1 173 48.6
VMungo1215G3385 Vigna mungo HOM05D005420 ORTHO05D006524 3.8e-34 149.1 168 53.0
FAN23G1410 Fragaria x ananassa HOM05D005420 ORTHO05D006524 4.9e-34 148.7 174 51.7
CiPaw.01G201600 Carya illinoinensis HOM05D005420 ORTHO05D006524 8.4e-34 147.9 99 73.7
CSS0022736 Camellia sinensis var. sinensis HOM05D005420 ORTHO05D006524 1.4e-33 147.1 103 71.8
CDE09G0694 Ceratophyllum demersum HOM05D005420 ORTHO05D006524 5.5e-33 145.2 174 50.0
MBI07_g10354_MAGBIO Magnolia biondii HOM05D005420 ORTHO05D006524 5.5e-33 145.2 170 50.0
CsaV3_7G022350 Cucumis sativus L. HOM05D005420 ORTHO05D006524 7.1e-33 144.8 129 62.8
Dinv33245 Davidia involucrata HOM05D005420 ORTHO05D006524 9.3e-33 144.4 105 70.5
Glyma.07G273700 Glycine max HOM05D005420 ORTHO05D006524 9.3e-33 144.4 113 66.4
arahy.Tifrunner.gnm1.ann1.D6NWCJ Arachis hypogaea HOM05D005420 ORTHO05D006524 2.1e-32 143.3 108 68.5
arahy.Tifrunner.gnm1.ann1.EMGW5K Arachis hypogaea HOM05D005420 ORTHO05D006524 2.1e-32 143.3 108 68.5
Glyma.17G000800 Glycine max HOM05D005420 ORTHO05D006524 3.5e-32 142.5 113 65.5
HanXRQChr11g0343501 Helianthus annuus HOM05D005420 ORTHO05D006524 3.5e-32 142.5 103 72.8
unitig_27.g25143 Utricularia gibba HOM05D005420 ORTHO05D006524 3.5e-32 142.5 131 59.5
Lsat_1_v5_gn_1_76981 Lactuca sativa HOM05D005420 ORTHO05D006524 4.6e-32 142.1 103 69.9
ClCG09G014850 Citrullus lanatus HOM05D005420 ORTHO05D006524 7.9e-32 141.4 148 56.8
PGR119G0486 Punica granatum HOM05D005420 ORTHO05D006524 7.9e-32 141.4 82 84.1
TWI36G0345 Tripterygium wilfordii HOM05D005420 ORTHO05D006524 7.9e-32 141.4 99 70.7
ECA248G1232 Erigeron canadensis HOM05D005420 ORTHO05D006524 1.3e-31 140.6 111 66.7
Oeu022910.1 Olea europaea HOM05D005420 ORTHO05D006524 1.3e-31 140.6 84 81.0
GSVIVG01038249001 Vitis vinifera HOM05D005420 ORTHO05D006524 1.8e-31 140.2 99 72.7
GSVIVG01026140001 Vitis vinifera HOM05D005420 ORTHO05D006524 3.0e-31 139.4 99 69.7
Nitab4.5_0008205g0010 Nicotiana tabacum HOM05D005420 ORTHO05D006524 5.1e-31 138.7 110 66.4
Cc03_g15990 Coffea canephora HOM05D005420 ORTHO05D006524 6.7e-31 138.3 175 48.6
Phvul.003G074600 Phaseolus vulgaris HOM05D005420 ORTHO05D006524 8.7e-31 137.9 108 64.8
Actinidia34566 Actinidia chinensis HOM05D005420 ORTHO05D006524 1.1e-30 137.5 183 47.0
Cpa.g.sc151.6 Carica papaya HOM05D005420 ORTHO05D006524 1.5e-30 137.1 86 77.9
Ah.07g203200 Amaranthus hybridus HOM05D005420 ORTHO05D006524 1.9e-30 136.7 157 50.3
DCAR_005460 Daucus carota HOM05D005420 ORTHO05D006524 2.5e-30 136.3 87 80.5
BcaC02g12350 Brassica carinata HOM05D005420 ORTHO05D006524 3.3e-30 136.0 177 50.3
BolC4t22118H Brassica oleracea HOM05D005420 ORTHO05D006524 3.3e-30 136.0 178 51.1
C04p04880 Brassica napus HOM05D005420 ORTHO05D006524 5.7e-30 135.2 177 50.3
Migut.G00921 Erythranthe guttata HOM05D005420 ORTHO05D006524 5.7e-30 135.2 133 58.6
Nitab4.5_0000013g0040 Nicotiana tabacum HOM05D005420 ORTHO05D006524 5.7e-30 135.2 166 48.8
AUR62002482 Chenopodium quinoa HOM05D005420 ORTHO05D006524 7.4e-30 134.8 99 66.7
Nn3g18334 Nelumbo nucifera HOM05D005420 ORTHO05D006524 7.4e-30 134.8 176 48.9
Peaxi162Scf01205g00032 Petunia axillaris HOM05D005420 ORTHO05D006524 7.4e-30 134.8 127 57.5
vmacro00721 Vaccinium macrocarpon HOM05D005420 ORTHO05D006524 7.4e-30 134.8 104 67.3
Sed0010932 Sechium edule HOM05D005420 ORTHO05D006524 9.6e-30 134.4 166 48.8
Sc25g0003040 Simmondsia chinensis HOM05D005420 ORTHO05D006524 1.3e-29 134.0 99 66.7
Duzib128G1088 Durio zibethinus HOM05D005420 ORTHO05D006524 1.6e-29 133.7 82 79.3
AUR62023710 Chenopodium quinoa HOM05D005420 ORTHO05D006524 2.1e-29 133.3 99 65.7
Sp4g26040 Schrenkiella parvula HOM05D005420 ORTHO05D006524 2.1e-29 133.3 175 49.1
Solyc08g015620.3 Solanum lycopersicum HOM05D005420 ORTHO05D006524 2.1e-29 133.3 86 74.4
Sopen08g005610 Solanum pennellii HOM05D005420 ORTHO05D006524 2.1e-29 133.3 86 74.4
Aqoxy1G01859 Aquilegia oxysepala HOM05D005420 ORTHO05D006524 2.8e-29 132.9 88 73.9
A05p04100 Brassica napus HOM05D005420 ORTHO05D006524 3.7e-29 132.5 174 51.1
Carub.0004s2651 Capsella rubella HOM05D005420 ORTHO05D006524 3.7e-29 132.5 173 50.3
Lj6C285T2 Lonicera japonica HOM05D005420 ORTHO05D006524 3.7e-29 132.5 82 82.9
Hund22588 Selenicereus undatus HOM05D005420 ORTHO05D006524 3.7e-29 132.5 116 59.5
ATR0743G098 Amborella trichopoda HOM05D005420 ORTHO05D006524 4.8e-29 132.1 175 46.3
BraA05t19397Z Brassica rapa HOM05D005420 ORTHO05D006524 4.8e-29 132.1 173 51.4
HanXRQChr01g0023651 Helianthus annuus HOM05D005420 ORTHO05D006524 4.8e-29 132.1 78 82.1
unitig_699.g19464 Utricularia gibba HOM05D005420 ORTHO05D006524 6.3e-29 131.7 78 82.1
HPP92_024700 Vanilla planifolia HOM05D005420 ORTHO05D006524 6.3e-29 131.7 99 64.6
Thhalv10001571m.g Eutrema salsugineum HOM05D005420 ORTHO05D006524 8.2e-29 131.3 174 46.6
EL10Ac3g06165 Beta vulgaris HOM05D005420 ORTHO05D006524 1.1e-28 131.0 158 49.4
THA.LOC104802345 Tarenaya hassleriana HOM05D005420 ORTHO05D006524 1.1e-28 131.0 176 47.7
Rhsim09G0003700 Rhododendron simsii HOM05D005420 ORTHO05D006524 1.4e-28 130.6 108 63.9
Nn7g37463 Nelumbo nucifera HOM05D005420 ORTHO05D006524 2.4e-28 129.8 176 48.3
Os01g0338600 Oryza sativa ssp. japonica HOM05D005420 ORTHO05D006524 3.1e-28 129.4 105 65.7
THA.LOC104804283 Tarenaya hassleriana HOM05D005420 ORTHO05D006524 5.3e-28 128.6 178 47.2
Carub.0005s2660 Capsella rubella HOM05D005420 ORTHO05D006524 6.9e-28 128.3 178 45.5
Aa31LG10G14100 Aethionema arabicum HOM05D005420 ORTHO05D006524 9.0e-28 127.9 176 47.2
AL4G42820 Arabidopsis lyrata HOM05D005420 ORTHO05D006524 9.0e-28 127.9 175 48.0
AT2G43945 Arabidopsis thaliana HOM05D005420 ORTHO05D006524 1.2e-27 127.5 175 48.6
TPR.G6015 Trifolium pratense HOM05D005420 ORTHO05D006524 1.2e-27 127.5 120 62.5
SGA_v2.0_scaffold12G06218 Striga asiatica HOM05D005420 ORTHO05D006524 2.6e-27 126.3 101 65.3
Medtr4g134910 Medicago truncatula HOM05D005420 ORTHO05D006524 1.0e-26 124.4 79 75.9
Ca_13540_v3 Cicer arietinum L. HOM05D005420 ORTHO05D006524 1.3e-26 124.0 149 50.3
BraA03t11665Z Brassica rapa HOM05D005420 ORTHO05D006524 1.7e-26 123.6 178 46.1
C03p29330 Brassica napus HOM05D005420 ORTHO05D006524 2.2e-26 123.2 177 48.6
BolC3t15280H Brassica oleracea HOM05D005420 ORTHO05D006524 2.2e-26 123.2 177 48.6
A03p24600 Brassica napus HOM05D005420 ORTHO05D006524 2.9e-26 122.9 178 47.8
BcaB06g29350 Brassica carinata HOM05D005420 ORTHO05D006524 5.0e-26 122.1 76 77.6
CARHR139120 Cardamine hirsuta HOM05D005420 ORTHO05D006524 5.0e-26 122.1 179 46.9
Psat4g001320 Pisum sativum HOM05D005420 ORTHO05D006524 5.0e-26 122.1 164 45.7
Aa31LG1G25640 Aethionema arabicum HOM05D005420 ORTHO05D006524 3.2e-25 119.4 79 72.2
Actinidia18399 Actinidia chinensis HOM05D005420 ORTHO05D006524 9.3e-25 117.9 180 43.9
BcaB02g08884 Brassica carinata HOM05D005420 ORTHO05D006524 1.6e-24 117.1 101 63.4
Zm00001eb159810 Zea mays HOM05D005420 ORTHO05D006524 1.6e-24 117.1 99 63.6
AT3G59870 Arabidopsis thaliana HOM05D005420 ORTHO05D006524 3.0e-23 112.8 181 43.1
MSTRG.9265 Avicennia marina HOM05D005420 ORTHO05D006524 1.9e-22 110.2 87 65.5
SMO367G0538 Selaginella moellendorffii HOM05D005420 ORTHO05D006524 3.3e-22 109.4 72 70.8
Pp3c8_21410 Physcomitrium patens HOM05D005420 ORTHO05D006524 1.3e-21 107.5 102 56.9
Mapoly0136s0029 Marchantia polymorpha HOM05D005420 ORTHO05D006524 1.6e-21 107.1 72 72.2
Pp3c24_16460 Physcomitrium patens HOM05D005420 ORTHO05D006524 3.7e-21 105.9 72 70.8
Pp3c20_1670 Physcomitrium patens HOM05D005420 ORTHO05D006524 8.2e-21 104.8 74 64.9
SEGI_26827 Sequoiadendron giganteum HOM05D005420 ORTHO05D006524 1.8e-20 103.6 178 43.8
Migut.N03031 Erythranthe guttata HOM05D005420 ORTHO05D006524 1.5e-19 100.5 116 50.9
AagrBONN_evm.TU.Sc2ySwM_228.1821 Anthoceros agrestis HOM05D005420 ORTHO05D006524 3.4e-19 99.4 82 61.0
CBR_g10867 Chara braunii HOM05D005420 ORTHO05D006524 9.4e-17 91.3 73 63.0
Haze_11131 Corylus avellana HOM05D005420 ORTHO05D006524 6.1e-16 88.6 229 31.4
Manes.13G003200 Manihot esculenta HOM05D005420 ORTHO05D006524 1.8e-12 77.0 42 88.1
MCO05G102 Micromonas commoda HOM05D005420 ORTHO05D006524 1.8e-12 77.0 45 75.6
Atru.chr12.1711 Acer truncatum HOM05D005420 ORTHO05D006524 1.5e-11 73.9 39 89.7
Cre16.g676450 Chlamydomonas reinhardtii HOM05D005420 ORTHO05D006524 4.5e-11 72.4 77 51.9
Lalb_Chr18g0044971 Lupinus albus HOM05D005420 ORTHO05D006524 4.5e-11 72.4 71 53.5
PRCOL_00006877 Prasinoderma coloniale HOM05D005420 ORTHO05D006524 7.2e-09 65.1 45 60.0
Sed0003231 Sechium edule HOM05D005420 ORTHO05D006524 2.1e-08 63.5 82 45.1
CDE02G3676 Ceratophyllum demersum HOM05D005420 ORTHO05D006524 7.9e-08 61.6 87 37.9
Zm00001eb356860 Zea mays HOM05D005420 ORTHO05D006524 5.7e-06 55.5 79 45.6


User provided reference genes

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