Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.L00721 Eucalyptus grandis HOM05D004605 ORTHO05D005804 5.3e-104 380.9 183 100.0
Eucgr.B03744 Eucalyptus grandis HOM05D004605 ORTHO05D005804 4.2e-101 371.3 184 97.3
Eucgr.I02062 Eucalyptus grandis HOM05D004605 ORTHO05D005804 1.7e-86 322.8 232 73.7
Lju361C6G5 Lonicera japonica HOM05D004605 ORTHO05D005804 1.0e-75 287.0 198 67.2
Peaxi162Scf00020g10235 Petunia axillaris HOM05D004605 ORTHO05D005804 4.0e-75 285.0 194 70.1
Ciclev10012619m.g Citrus clementina HOM05D004605 ORTHO05D005804 5.2e-75 284.6 198 67.7
Thecc.04G106100 Theobroma cacao HOM05D004605 ORTHO05D005804 6.8e-75 284.3 197 67.5
Hma1.2p1_0474F.1_g160750 Hydrangea macrophylla HOM05D004605 ORTHO05D005804 1.2e-74 283.5 200 67.0
Nitab4.5_0007530g0010 Nicotiana tabacum HOM05D004605 ORTHO05D005804 1.5e-74 283.1 194 70.1
Sopen02g034020 Solanum pennellii HOM05D004605 ORTHO05D005804 1.5e-74 283.1 194 69.1
Solyc02g089230.3 Solanum lycopersicum HOM05D004605 ORTHO05D005804 3.4e-74 282.0 194 69.1
Duzib133G0947 Durio zibethinus HOM05D004605 ORTHO05D005804 4.4e-74 281.6 198 66.2
Gohir.D07G186600 Gossypium hirsutum HOM05D004605 ORTHO05D005804 4.4e-74 281.6 197 67.5
Gorai.001G207200 Gossypium raimondii HOM05D004605 ORTHO05D005804 4.4e-74 281.6 197 67.5
TAR629G2115 Trochodendron aralioides HOM05D004605 ORTHO05D005804 4.4e-74 281.6 198 66.7
PGSC0003DMG400001379 Solanum tuberosum HOM05D004605 ORTHO05D005804 1.3e-73 280.0 194 68.6
COL.COLO4_10258 Corchorus olitorius HOM05D004605 ORTHO05D005804 1.7e-73 279.6 198 64.6
Nitab4.5_0001339g0150 Nicotiana tabacum HOM05D004605 ORTHO05D005804 2.2e-73 279.3 194 68.6
TWI60G1007 Tripterygium wilfordii HOM05D004605 ORTHO05D005804 3.7e-73 278.5 195 67.2
CAN.G497.71 Capsicum annuum HOM05D004605 ORTHO05D005804 4.9e-73 278.1 193 69.4
Gohir.A07G179800 Gossypium hirsutum HOM05D004605 ORTHO05D005804 1.1e-72 276.9 197 66.5
Duzib138G1714 Durio zibethinus HOM05D004605 ORTHO05D005804 4.1e-72 275.0 197 65.5
Manes.01G103400 Manihot esculenta HOM05D004605 ORTHO05D005804 4.1e-72 275.0 198 65.7
Manes.02G059400 Manihot esculenta HOM05D004605 ORTHO05D005804 7.0e-72 274.2 198 65.2
Atru.chr8.648 Acer truncatum HOM05D004605 ORTHO05D005804 1.2e-71 273.5 194 66.0
Cpa.g.sc14.228 Carica papaya HOM05D004605 ORTHO05D005804 1.2e-71 273.5 198 66.2
GSVIVG01036547001 Vitis vinifera HOM05D004605 ORTHO05D005804 2.0e-71 272.7 197 65.5
Potri.017G100000 Populus trichocarpa HOM05D004605 ORTHO05D005804 2.7e-71 272.3 197 64.5
Lsat_1_v5_gn_2_90241 Lactuca sativa HOM05D004605 ORTHO05D005804 1.7e-70 269.6 198 64.1
PSO675G6317 Papaver somniferum HOM05D004605 ORTHO05D005804 2.3e-70 269.2 198 64.1
Rhsim08G0077200 Rhododendron simsii HOM05D004605 ORTHO05D005804 1.9e-69 266.2 199 65.3
HanXRQChr14g0452481 Helianthus annuus HOM05D004605 ORTHO05D005804 2.5e-69 265.8 198 63.1
Actinidia26268 Actinidia chinensis HOM05D004605 ORTHO05D005804 3.3e-69 265.4 199 62.3
Oeu031839.1 Olea europaea HOM05D004605 ORTHO05D005804 3.3e-69 265.4 198 62.6
Hund16233 Selenicereus undatus HOM05D004605 ORTHO05D005804 3.3e-69 265.4 197 63.5
SGA_v2.0_scaffold148G36445 Striga asiatica HOM05D004605 ORTHO05D005804 4.3e-69 265.0 198 62.1
Cfa007695 Carpinus fangiana HOM05D004605 ORTHO05D005804 5.6e-69 264.6 197 65.0
ECA238G2860 Erigeron canadensis HOM05D004605 ORTHO05D005804 1.6e-68 263.1 198 63.6
PSO732G0027 Papaver somniferum HOM05D004605 ORTHO05D005804 1.6e-68 263.1 198 62.1
Sabra17G0086200 Salix brachista HOM05D004605 ORTHO05D005804 2.1e-68 262.7 193 63.7
QL02p065873 Quercus lobata HOM05D004605 ORTHO05D005804 2.8e-68 262.3 196 63.3
Haze_14382 Corylus avellana HOM05D004605 ORTHO05D005804 3.6e-68 261.9 199 63.3
Glyma.18G273900 Glycine max HOM05D004605 ORTHO05D005804 3.6e-68 261.9 195 63.6
arahy.Tifrunner.gnm1.ann1.M6S7AL Arachis hypogaea HOM05D004605 ORTHO05D005804 4.7e-68 261.5 198 62.1
Lj1g0025970 Lotus japonicus HOM05D004605 ORTHO05D005804 4.7e-68 261.5 198 64.1
CSS0024904 Camellia sinensis var. sinensis HOM05D004605 ORTHO05D005804 2.3e-67 259.2 200 62.5
Phvul.008G027000 Phaseolus vulgaris HOM05D004605 ORTHO05D005804 2.3e-67 259.2 195 62.6
arahy.Tifrunner.gnm1.ann1.90K79T Arachis hypogaea HOM05D004605 ORTHO05D005804 3.1e-67 258.8 198 61.6
Migut.H00587 Erythranthe guttata HOM05D004605 ORTHO05D005804 5.2e-67 258.1 198 61.6
VMungo1383G2960 Vigna mungo HOM05D004605 ORTHO05D005804 6.8e-67 257.7 195 62.6
MELO3C026298.2 Cucumis melo HOM05D004605 ORTHO05D005804 8.9e-67 257.3 195 64.1
Phvul.008G026800 Phaseolus vulgaris HOM05D004605 ORTHO05D005804 8.9e-67 257.3 195 62.1
SalBow1G3999 Salvia bowleyana HOM05D004605 ORTHO05D005804 1.5e-66 256.5 195 61.5
CsaV3_4G010080 Cucumis sativus L. HOM05D004605 ORTHO05D005804 2.0e-66 256.1 195 63.6
Lalb_Chr10g0092731 Lupinus albus HOM05D004605 ORTHO05D005804 5.8e-66 254.6 198 60.6
ClCG07G016040 Citrullus lanatus HOM05D004605 ORTHO05D005804 7.5e-66 254.2 195 63.1
Glyma.08G251200 Glycine max HOM05D004605 ORTHO05D005804 7.5e-66 254.2 195 62.1
Medtr7g016650 Medicago truncatula HOM05D004605 ORTHO05D005804 7.5e-66 254.2 198 61.6
CANSAT64G2231 Cannabis sativa HOM05D004605 ORTHO05D005804 1.3e-65 253.4 199 62.3
CiPaw.03G083000 Carya illinoinensis HOM05D004605 ORTHO05D005804 3.7e-65 251.9 198 59.1
Phvul.008G027600 Phaseolus vulgaris HOM05D004605 ORTHO05D005804 3.7e-65 251.9 194 62.9
Prupe.3G249100 Prunus persica HOM05D004605 ORTHO05D005804 3.7e-65 251.9 196 63.3
Sed0020846 Sechium edule HOM05D004605 ORTHO05D005804 3.7e-65 251.9 195 61.0
Aqoxy3G03715 Aquilegia oxysepala HOM05D004605 ORTHO05D005804 4.9e-65 251.5 194 61.9
MD17G1065700 Malus domestica HOM05D004605 ORTHO05D005804 1.9e-64 249.6 196 62.8
A07p19860 Brassica napus HOM05D004605 ORTHO05D005804 2.4e-64 249.2 198 61.6
C06p18440 Brassica napus HOM05D004605 ORTHO05D005804 5.4e-64 248.1 198 61.1
BcaC08g44406 Brassica carinata HOM05D004605 ORTHO05D005804 7.0e-64 247.7 198 61.1
BolC6t37056H Brassica oleracea HOM05D004605 ORTHO05D005804 7.0e-64 247.7 198 61.1
MD09G1074300 Malus domestica HOM05D004605 ORTHO05D005804 7.0e-64 247.7 196 61.2
DCAR_021425 Daucus carota HOM05D004605 ORTHO05D005804 9.2e-64 247.3 198 58.6
BraA07t29690Z Brassica rapa HOM05D004605 ORTHO05D005804 1.2e-63 246.9 198 60.6
Ca_06902_v3 Cicer arietinum L. HOM05D004605 ORTHO05D005804 1.2e-63 246.9 198 59.1
VMungo1383G3490 Vigna mungo HOM05D004605 ORTHO05D005804 1.6e-63 246.5 195 61.0
Aa31LG9G16810 Aethionema arabicum HOM05D004605 ORTHO05D005804 2.0e-63 246.1 194 60.8
Aqoxy3G03714 Aquilegia oxysepala HOM05D004605 ORTHO05D005804 2.0e-63 246.1 194 58.8
BcaB02g07994 Brassica carinata HOM05D004605 ORTHO05D005804 2.0e-63 246.1 198 60.6
CiPaw.03G083100 Carya illinoinensis HOM05D004605 ORTHO05D005804 2.0e-63 246.1 198 59.6
Sp7g03000 Schrenkiella parvula HOM05D004605 ORTHO05D005804 2.0e-63 246.1 194 61.9
THA.LOC104805526 Tarenaya hassleriana HOM05D004605 ORTHO05D005804 3.5e-63 245.4 198 59.1
Carub.0007s3694 Capsella rubella HOM05D004605 ORTHO05D005804 1.3e-62 243.4 194 60.8
AL7G51520 Arabidopsis lyrata HOM05D004605 ORTHO05D005804 1.7e-62 243.0 194 59.8
AT5G38900 Arabidopsis thaliana HOM05D004605 ORTHO05D005804 3.0e-62 242.3 194 59.8
Psat3g203400 Pisum sativum HOM05D004605 ORTHO05D005804 3.0e-62 242.3 198 58.6
Aqoxy3G03716 Aquilegia oxysepala HOM05D004605 ORTHO05D005804 6.6e-62 241.1 194 58.8
Thhalv10027927m.g Eutrema salsugineum HOM05D004605 ORTHO05D005804 8.6e-62 240.7 194 59.8
MSTRG.15437 Avicennia marina HOM05D004605 ORTHO05D005804 3.3e-61 238.8 196 59.2
CARHR263630 Cardamine hirsuta HOM05D004605 ORTHO05D005804 4.3e-61 238.4 194 60.8
TPR.G23408 Trifolium pratense HOM05D004605 ORTHO05D005804 4.7e-60 235.0 198 57.1
FvH4_6g46390 Fragaria vesca HOM05D004605 ORTHO05D005804 6.2e-60 234.6 198 58.1
HPP92_012260 Vanilla planifolia HOM05D004605 ORTHO05D005804 8.1e-60 234.2 196 56.1
Zm00001eb219300 Zea mays HOM05D004605 ORTHO05D005804 8.1e-60 234.2 198 55.6
FAN05G4053 Fragaria x ananassa HOM05D004605 ORTHO05D005804 6.8e-59 231.1 206 55.8
Os03g0598900 Oryza sativa ssp. japonica HOM05D004605 ORTHO05D005804 2.6e-58 229.2 198 55.6
RcHm_v2.0_Chr2g0164921 Rosa chinensis HOM05D004605 ORTHO05D005804 2.6e-58 229.2 198 56.1
EL10Ac2g04442 Beta vulgaris HOM05D004605 ORTHO05D005804 3.4e-58 228.8 194 57.2
Zm00001eb049940 Zea mays HOM05D004605 ORTHO05D005804 4.4e-58 228.4 198 54.5
MSTRG.15436 Avicennia marina HOM05D004605 ORTHO05D005804 6.0e-55 218.0 174 59.2
Mapoly0001s0057 Marchantia polymorpha HOM05D004605 ORTHO05D005804 3.9e-54 215.3 198 49.0
ATR0827G055 Amborella trichopoda HOM05D004605 ORTHO05D005804 2.5e-53 212.6 198 51.5
MBI16_g34534_MAGBIO Magnolia biondii HOM05D004605 ORTHO05D005804 2.5e-53 212.6 200 53.5
AUR62023160 Chenopodium quinoa HOM05D004605 ORTHO05D005804 1.6e-52 209.9 188 55.9
Eucgr.L00305 Eucalyptus grandis HOM05D004605 ORTHO05D005804 2.1e-52 209.5 126 82.5
FAN14G2038 Fragaria x ananassa HOM05D004605 ORTHO05D005804 1.1e-51 207.2 177 58.2
SMO223G0030 Selaginella moellendorffii HOM05D004605 ORTHO05D005804 3.1e-51 205.7 195 50.8
Pp3c14_20450 Physcomitrium patens HOM05D004605 ORTHO05D005804 1.2e-50 203.8 196 50.5
Sc10g0000600 Simmondsia chinensis HOM05D004605 ORTHO05D005804 1.1e-48 197.2 159 60.4
vmacro18128 Vaccinium macrocarpon HOM05D004605 ORTHO05D005804 3.2e-48 195.7 174 57.5
Prupe.3G249000 Prunus persica HOM05D004605 ORTHO05D005804 3.5e-47 192.2 195 47.2
AUR62009481 Chenopodium quinoa HOM05D004605 ORTHO05D005804 6.6e-46 188.0 189 50.8
SEGI_21234 Sequoiadendron giganteum HOM05D004605 ORTHO05D005804 3.3e-45 185.7 194 44.3
arahy.Tifrunner.gnm1.ann1.XASR8W Arachis hypogaea HOM05D004605 ORTHO05D005804 2.8e-44 182.6 185 50.8
Cc07_g04470 Coffea canephora HOM05D004605 ORTHO05D005804 9.9e-42 174.1 127 64.6
FvH4_6g46370 Fragaria vesca HOM05D004605 ORTHO05D005804 3.2e-40 169.1 198 45.5
FAN02G3403 Fragaria x ananassa HOM05D004605 ORTHO05D005804 4.2e-40 168.7 154 55.8
RcHm_v2.0_Chr2g0164911 Rosa chinensis HOM05D004605 ORTHO05D005804 5.4e-40 168.3 198 45.5
SalBow3G1842 Salvia bowleyana HOM05D004605 ORTHO05D005804 3.9e-38 162.2 199 46.2
FAN02G1482 Fragaria x ananassa HOM05D004605 ORTHO05D005804 8.7e-38 161.0 199 44.2
AagrBONN_evm.TU.Sc2ySwM_340.409 Anthoceros agrestis HOM05D004605 ORTHO05D005804 1.9e-37 159.8 183 45.4
AUR62024435 Chenopodium quinoa HOM05D004605 ORTHO05D005804 7.3e-37 157.9 124 60.5
AagrBONN_evm.TU.Sc2ySwM_340.410 Anthoceros agrestis HOM05D004605 ORTHO05D005804 1.3e-36 157.1 171 46.2
QL02p053766 Quercus lobata HOM05D004605 ORTHO05D005804 8.1e-36 154.5 126 57.9
Cre12.g553700 Chlamydomonas reinhardtii HOM05D004605 ORTHO05D005804 1.8e-35 153.3 202 40.1
FAN09G1153 Fragaria x ananassa HOM05D004605 ORTHO05D005804 3.8e-33 145.6 190 44.7
Dinv33862 Davidia involucrata HOM05D004605 ORTHO05D005804 4.6e-31 138.7 112 60.7
Aqoxy3G03713 Aquilegia oxysepala HOM05D004605 ORTHO05D005804 4.3e-29 132.1 93 64.5
CDE10G0487 Ceratophyllum demersum HOM05D004605 ORTHO05D005804 1.6e-28 130.2 92 63.0
FAN09G3310 Fragaria x ananassa HOM05D004605 ORTHO05D005804 2.4e-27 126.3 169 40.2
Nn4g23522 Nelumbo nucifera HOM05D004605 ORTHO05D005804 4.2e-24 115.5 76 69.7
Cc07_g04480 Coffea canephora HOM05D004605 ORTHO05D005804 7.1e-24 114.8 99 58.6
FAN05G1095 Fragaria x ananassa HOM05D004605 ORTHO05D005804 2.7e-23 112.8 198 35.9
MCO08G262 Micromonas commoda HOM05D004605 ORTHO05D005804 1.9e-21 106.7 210 33.8
HPP92_012204 Vanilla planifolia HOM05D004605 ORTHO05D005804 1.6e-20 103.6 122 46.7
PSO591G0315 Papaver somniferum HOM05D004605 ORTHO05D005804 6.2e-20 101.7 63 68.3
Pp3s30_530 Physcomitrium patens HOM05D004605 ORTHO05D005804 4.0e-19 99.0 202 32.7
Cfa025436 Carpinus fangiana HOM05D004605 ORTHO05D005804 1.7e-17 93.6 204 31.9
BolC3t14639H Brassica oleracea HOM05D004605 ORTHO05D005804 5.7e-13 78.6 44 72.7
SMO270G0021 Selaginella moellendorffii HOM05D004605 ORTHO05D005804 1.8e-11 73.6 178 29.2
HPP92_012246 Vanilla planifolia HOM05D004605 ORTHO05D005804 1.2e-10 70.9 93 39.8
Mapoly0107s0018 Marchantia polymorpha HOM05D004605 ORTHO05D005804 5.9e-10 68.6 192 27.1
arahy.Tifrunner.gnm1.ann1.2EY802 Arachis hypogaea HOM05D004605 ORTHO05D005804 1.0e-09 67.8 47 61.7
HanXRQChr04g0116811 Helianthus annuus HOM05D004605 ORTHO05D005804 1.1e-08 64.3 40 67.5
CBR_g36839 Chara braunii HOM05D004605 ORTHO05D005804 2.5e-08 63.2 190 25.3
QL02p036101 Quercus lobata HOM05D004605 ORTHO05D005804 2.5e-08 63.2 82 42.7
QL10p049039 Quercus lobata HOM05D004605 ORTHO05D005804 2.5e-08 63.2 82 42.7
QL10p051328 Quercus lobata HOM05D004605 ORTHO05D005804 7.2e-08 61.6 82 41.5
Nn1g08577 Nelumbo nucifera HOM05D004605 ORTHO05D005804 9.4e-08 61.2 37 67.6
Nn1g08580 Nelumbo nucifera HOM05D004605 ORTHO05D005804 1.4e-06 57.4 31 74.2


User provided reference genes

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