Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.L00670 Eucalyptus grandis HOM05D004340 ORTHO05D006363 3.4e-89 331.6 168 100.0
Eucgr.I00217 Eucalyptus grandis HOM05D004340 ORTHO05D006363 1.0e-69 266.9 181 79.0
QL03p068099 Quercus lobata HOM05D004340 ORTHO05D006363 4.2e-55 218.4 179 67.6
GSVIVG01019948001 Vitis vinifera HOM05D004340 ORTHO05D006363 3.3e-52 208.8 178 65.2
Haze_11982 Corylus avellana HOM05D004340 ORTHO05D006363 2.4e-50 202.6 179 64.2
Cfa008953 Carpinus fangiana HOM05D004340 ORTHO05D006363 9.1e-50 200.7 179 63.7
CiPaw.05G131900 Carya illinoinensis HOM05D004340 ORTHO05D006363 9.1e-50 200.7 179 64.2
Rhsim10G0119600 Rhododendron simsii HOM05D004340 ORTHO05D006363 1.0e-48 197.2 181 64.1
PGR102G3073 Punica granatum HOM05D004340 ORTHO05D006363 1.7e-48 196.4 177 65.5
Nn4g23232 Nelumbo nucifera HOM05D004340 ORTHO05D006363 5.0e-48 194.9 173 64.7
Thecc.02G342300 Theobroma cacao HOM05D004340 ORTHO05D006363 2.5e-47 192.6 178 61.2
Prupe.1G035400 Prunus persica HOM05D004340 ORTHO05D006363 7.2e-47 191.0 171 63.7
TAR629G2604 Trochodendron aralioides HOM05D004340 ORTHO05D006363 7.2e-47 191.0 179 62.6
COL.COLO4_27998 Corchorus olitorius HOM05D004340 ORTHO05D006363 9.4e-47 190.7 178 60.7
MD16G1069200 Malus domestica HOM05D004340 ORTHO05D006363 3.6e-46 188.7 179 60.3
Potri.008G089600 Populus trichocarpa HOM05D004340 ORTHO05D006363 3.6e-46 188.7 179 61.5
RcHm_v2.0_Chr4g0439421 Rosa chinensis HOM05D004340 ORTHO05D006363 4.7e-46 188.3 179 59.8
Dinv16674 Davidia involucrata HOM05D004340 ORTHO05D006363 6.1e-46 188.0 177 62.7
AUR62005824 Chenopodium quinoa HOM05D004340 ORTHO05D006363 1.0e-45 187.2 176 63.1
Ca_18821_v3 Cicer arietinum L. HOM05D004340 ORTHO05D006363 1.0e-45 187.2 179 61.5
Ca_29729_v3 Cicer arietinum L. HOM05D004340 ORTHO05D006363 1.0e-45 187.2 179 61.5
FvH4_5g29350 Fragaria vesca HOM05D004340 ORTHO05D006363 1.0e-45 187.2 179 59.2
FAN04G3196 Fragaria x ananassa HOM05D004340 ORTHO05D006363 1.0e-45 187.2 179 59.2
FAN13G0065 Fragaria x ananassa HOM05D004340 ORTHO05D006363 1.0e-45 187.2 179 59.2
Gohir.A13G077700 Gossypium hirsutum HOM05D004340 ORTHO05D006363 1.0e-45 187.2 174 59.8
Gorai.013G087900 Gossypium raimondii HOM05D004340 ORTHO05D006363 1.0e-45 187.2 174 59.8
FAN18G2257 Fragaria x ananassa HOM05D004340 ORTHO05D006363 1.4e-45 186.8 179 58.7
Medtr4g082265 Medicago truncatula HOM05D004340 ORTHO05D006363 1.8e-45 186.4 178 60.7
Atru.chr10.1247 Acer truncatum HOM05D004340 ORTHO05D006363 3.0e-45 185.7 178 58.4
Eucgr.L00684 Eucalyptus grandis HOM05D004340 ORTHO05D006363 3.0e-45 185.7 165 64.8
Medtr4g082150 Medicago truncatula HOM05D004340 ORTHO05D006363 3.0e-45 185.7 178 60.1
CSS0018825 Camellia sinensis var. sinensis HOM05D004340 ORTHO05D006363 5.1e-45 184.9 176 59.1
AUR62032818 Chenopodium quinoa HOM05D004340 ORTHO05D006363 8.8e-45 184.1 176 62.5
Gohir.D13G076900 Gossypium hirsutum HOM05D004340 ORTHO05D006363 8.8e-45 184.1 174 58.6
Atru.chr11.1746 Acer truncatum HOM05D004340 ORTHO05D006363 1.5e-44 183.3 178 57.9
PSO832G0091 Papaver somniferum HOM05D004340 ORTHO05D006363 1.5e-44 183.3 176 61.4
Phvul.001G233800 Phaseolus vulgaris HOM05D004340 ORTHO05D006363 1.5e-44 183.3 179 59.8
VMungo1383G3199 Vigna mungo HOM05D004340 ORTHO05D006363 1.5e-44 183.3 177 59.9
Aqoxy3G03456 Aquilegia oxysepala HOM05D004340 ORTHO05D006363 2.6e-44 182.6 179 61.5
Glyma.11G220500 Glycine max HOM05D004340 ORTHO05D006363 3.3e-44 182.2 179 59.8
Glyma.18G036900 Glycine max HOM05D004340 ORTHO05D006363 3.3e-44 182.2 179 59.8
PSO063G1986 Papaver somniferum HOM05D004340 ORTHO05D006363 3.3e-44 182.2 176 60.8
TPR.G34046 Trifolium pratense HOM05D004340 ORTHO05D006363 3.3e-44 182.2 179 60.3
EL10Ac6g13244 Beta vulgaris HOM05D004340 ORTHO05D006363 7.4e-44 181.0 173 61.3
Lalb_Chr05g0220271 Lupinus albus HOM05D004340 ORTHO05D006363 9.7e-44 180.6 181 58.6
Ciclev10030675m.g Citrus clementina HOM05D004340 ORTHO05D006363 1.7e-43 179.9 178 59.0
Sabra08G0067000 Salix brachista HOM05D004340 ORTHO05D006363 2.2e-43 179.5 179 59.8
CANSAT64G1884 Cannabis sativa HOM05D004340 ORTHO05D006363 2.8e-43 179.1 193 57.0
Oeu005760.1 Olea europaea HOM05D004340 ORTHO05D006363 2.8e-43 179.1 175 60.6
Psat7g160080 Pisum sativum HOM05D004340 ORTHO05D006363 3.7e-43 178.7 179 59.8
Cc11_g12720 Coffea canephora HOM05D004340 ORTHO05D006363 4.8e-43 178.3 174 59.2
Manes.01G034000 Manihot esculenta HOM05D004340 ORTHO05D006363 4.8e-43 178.3 178 61.2
vmacro05308 Vaccinium macrocarpon HOM05D004340 ORTHO05D006363 4.8e-43 178.3 180 59.4
Medtr7g021880 Medicago truncatula HOM05D004340 ORTHO05D006363 8.2e-43 177.6 179 58.7
THA.LOC104801804 Tarenaya hassleriana HOM05D004340 ORTHO05D006363 8.2e-43 177.6 177 57.6
arahy.Tifrunner.gnm1.ann1.AR8P07 Arachis hypogaea HOM05D004340 ORTHO05D006363 1.1e-42 177.2 178 57.9
Hund25218 Selenicereus undatus HOM05D004340 ORTHO05D006363 1.4e-42 176.8 180 60.0
Lj4g0013877 Lotus japonicus HOM05D004340 ORTHO05D006363 2.4e-42 176.0 178 59.0
SalBow2G1648 Salvia bowleyana HOM05D004340 ORTHO05D006363 3.1e-42 175.6 172 61.0
Sc11g0002100 Simmondsia chinensis HOM05D004340 ORTHO05D006363 5.3e-42 174.9 178 57.9
arahy.Tifrunner.gnm1.ann1.MXBT1J Arachis hypogaea HOM05D004340 ORTHO05D006363 1.2e-41 173.7 178 57.3
Aqoxy3G02559 Aquilegia oxysepala HOM05D004340 ORTHO05D006363 2.0e-41 172.9 174 57.5
MBI05_g36413_MAGBIO Magnolia biondii HOM05D004340 ORTHO05D006363 3.5e-41 172.2 168 58.3
Cpa.g.sc1.50 Carica papaya HOM05D004340 ORTHO05D006363 7.7e-41 171.0 171 59.6
AL3G42300 Arabidopsis lyrata HOM05D004340 ORTHO05D006363 1.3e-40 170.2 174 58.6
Sopen05g003610 Solanum pennellii HOM05D004340 ORTHO05D006363 1.7e-40 169.9 173 57.2
TWI79G0307 Tripterygium wilfordii HOM05D004340 ORTHO05D006363 1.7e-40 169.9 179 58.7
Lj1g0001827 Lotus japonicus HOM05D004340 ORTHO05D006363 2.9e-40 169.1 181 56.4
AT2G04660 Arabidopsis thaliana HOM05D004340 ORTHO05D006363 5.0e-40 168.3 177 57.6
Carub.0003s2628 Capsella rubella HOM05D004340 ORTHO05D006363 6.5e-40 167.9 182 57.1
Migut.L01267 Erythranthe guttata HOM05D004340 ORTHO05D006363 6.5e-40 167.9 172 58.7
Lsat_1_v5_gn_8_50141 Lactuca sativa HOM05D004340 ORTHO05D006363 8.5e-40 167.5 177 58.2
PGSC0003DMG400018437 Solanum tuberosum HOM05D004340 ORTHO05D006363 1.1e-39 167.2 173 57.2
BraA02t04684Z Brassica rapa HOM05D004340 ORTHO05D006363 3.2e-39 165.6 172 58.1
CAN.G1335.16 Capsicum annuum HOM05D004340 ORTHO05D006363 4.2e-39 165.2 179 55.9
Lj3A1035G45 Lonicera japonica HOM05D004340 ORTHO05D006363 4.2e-39 165.2 178 56.2
TPR.G5981 Trifolium pratense HOM05D004340 ORTHO05D006363 4.2e-39 165.2 180 56.1
Ah.03g134830 Amaranthus hybridus HOM05D004340 ORTHO05D006363 5.5e-39 164.9 180 56.1
Nitab4.5_0000040g0090 Nicotiana tabacum HOM05D004340 ORTHO05D006363 7.2e-39 164.5 180 56.1
DCAR_027428 Daucus carota HOM05D004340 ORTHO05D006363 9.4e-39 164.1 180 55.0
Solyc05g007750.4 Solanum lycopersicum HOM05D004340 ORTHO05D006363 9.4e-39 164.1 173 57.2
BcaC03g13079 Brassica carinata HOM05D004340 ORTHO05D006363 1.6e-38 163.3 172 57.0
BolC2t06011H Brassica oleracea HOM05D004340 ORTHO05D006363 1.6e-38 163.3 172 57.0
Glyma.10G070000 Glycine max HOM05D004340 ORTHO05D006363 1.6e-38 163.3 155 60.0
Nitab4.5_0004300g0030 Nicotiana tabacum HOM05D004340 ORTHO05D006363 2.1e-38 162.9 184 53.3
CARHR261990 Cardamine hirsuta HOM05D004340 ORTHO05D006363 3.6e-38 162.2 173 56.6
Thhalv10027638m.g Eutrema salsugineum HOM05D004340 ORTHO05D006363 8.0e-38 161.0 174 56.9
Sp7g01960 Schrenkiella parvula HOM05D004340 ORTHO05D006363 1.0e-37 160.6 172 56.4
SGA_v2.0_scaffold172G38951 Striga asiatica HOM05D004340 ORTHO05D006363 1.0e-37 160.6 173 59.0
Peaxi162Scf00222g00716 Petunia axillaris HOM05D004340 ORTHO05D006363 1.8e-37 159.8 141 63.1
MSTRG.717 Avicennia marina HOM05D004340 ORTHO05D006363 5.2e-37 158.3 172 56.4
HanXRQChr12g0362121 Helianthus annuus HOM05D004340 ORTHO05D006363 1.1e-36 157.1 155 60.0
Aa31LG10G13720 Aethionema arabicum HOM05D004340 ORTHO05D006363 1.5e-36 156.8 176 54.0
BcaB05g21922 Brassica carinata HOM05D004340 ORTHO05D006363 2.0e-36 156.4 172 56.4
BraA04t16952Z Brassica rapa HOM05D004340 ORTHO05D006363 3.3e-36 155.6 169 55.0
C04p46590 Brassica napus HOM05D004340 ORTHO05D006363 1.3e-35 153.7 172 54.7
BolC4t26245H Brassica oleracea HOM05D004340 ORTHO05D006363 1.3e-35 153.7 172 55.2
Os04g0484800 Oryza sativa ssp. japonica HOM05D004340 ORTHO05D006363 2.8e-35 152.5 178 55.6
ECA233G3760 Erigeron canadensis HOM05D004340 ORTHO05D006363 4.8e-35 151.8 159 57.9
Sed0000698 Sechium edule HOM05D004340 ORTHO05D006363 6.3e-35 151.4 150 60.0
Zm00001eb227040 Zea mays HOM05D004340 ORTHO05D006363 6.3e-35 151.4 154 59.7
CsaV3_5G025240 Cucumis sativus L. HOM05D004340 ORTHO05D006363 2.0e-33 146.4 175 53.7
MELO3C002960.2 Cucumis melo HOM05D004340 ORTHO05D006363 4.5e-33 145.2 174 52.9
A04p12890 Brassica napus HOM05D004340 ORTHO05D006363 2.9e-32 142.5 169 50.9
HPP92_022007 Vanilla planifolia HOM05D004340 ORTHO05D006363 1.1e-31 140.6 173 51.4
vmacro11375 Vaccinium macrocarpon HOM05D004340 ORTHO05D006363 2.1e-30 136.3 306 35.9
ATR0564G449 Amborella trichopoda HOM05D004340 ORTHO05D006363 2.3e-29 132.9 179 48.0
ClCG09G021920 Citrullus lanatus HOM05D004340 ORTHO05D006363 1.2e-28 130.6 189 49.2
Duzib251G0421 Durio zibethinus HOM05D004340 ORTHO05D006363 1.5e-28 130.2 129 53.5
HPP92_021921 Vanilla planifolia HOM05D004340 ORTHO05D006363 1.3e-27 127.1 157 50.3
BcaB06g27417 Brassica carinata HOM05D004340 ORTHO05D006363 1.7e-27 126.7 178 48.3
vmacro05170 Vaccinium macrocarpon HOM05D004340 ORTHO05D006363 2.8e-27 125.9 83 75.9
Nn1g04520 Nelumbo nucifera HOM05D004340 ORTHO05D006363 1.2e-25 120.6 70 84.3
SEGI_17726 Sequoiadendron giganteum HOM05D004340 ORTHO05D006363 1.4e-21 107.1 183 38.3
Actinidia33215 Actinidia chinensis HOM05D004340 ORTHO05D006363 3.8e-16 89.0 121 48.8
AagrBONN_evm.TU.Sc2ySwM_344.3807 Anthoceros agrestis HOM05D004340 ORTHO05D006363 4.3e-15 85.5 191 34.6
Pp3c11_22070 Physcomitrium patens HOM05D004340 ORTHO05D006363 8.0e-14 81.3 142 38.0
SMO361G0530 Selaginella moellendorffii HOM05D004340 ORTHO05D006363 1.0e-13 80.9 178 36.0
Mapoly0122s0055 Marchantia polymorpha HOM05D004340 ORTHO05D006363 1.3e-11 73.9 155 31.0
vmacro05169 Vaccinium macrocarpon HOM05D004340 ORTHO05D006363 2.2e-11 73.2 78 53.8
CDE04G0644 Ceratophyllum demersum HOM05D004340 ORTHO05D006363 4.9e-11 72.0 112 44.6
CBR_g543 Chara braunii HOM05D004340 ORTHO05D006363 4.6e-09 65.5 153 33.3
unitig_747.g21183 Utricularia gibba HOM05D004340 ORTHO05D006363 2.5e-07 59.7 112 39.3
SHI21660 Sapria himalayana HOM05D004340 ORTHO05D006363 5.6e-07 58.5 77 48.1


User provided reference genes

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