Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.L00640 Eucalyptus grandis HOM05D007897 ORTHO05D010061 6.2e-254 880.6 529 100.0
PGR142G1366 Punica granatum HOM05D007897 ORTHO05D010061 2.1e-108 397.1 471 59.9
COL.COLO4_35959 Corchorus olitorius HOM05D007897 ORTHO05D010061 2.7e-100 370.2 439 61.5
Duzib212G0894 Durio zibethinus HOM05D007897 ORTHO05D010061 9.1e-96 355.1 415 62.2
Gorai.006G225200 Gossypium raimondii HOM05D007897 ORTHO05D010061 5.9e-95 352.4 423 61.2
Gohir.D09G201400 Gossypium hirsutum HOM05D007897 ORTHO05D010061 1.3e-94 351.3 423 61.2
Cpa.g.sc157.16 Carica papaya HOM05D007897 ORTHO05D010061 1.9e-93 347.4 455 56.9
Lalb_Chr03g0036571 Lupinus albus HOM05D007897 ORTHO05D010061 3.9e-91 339.7 437 57.2
Manes.05G198900 Manihot esculenta HOM05D007897 ORTHO05D010061 5.9e-87 325.9 445 56.2
TWI23G0094 Tripterygium wilfordii HOM05D007897 ORTHO05D010061 1.7e-86 324.3 441 54.9
Thecc.04G191100 Theobroma cacao HOM05D007897 ORTHO05D010061 3.8e-86 323.2 436 57.8
Dinv32167 Davidia involucrata HOM05D007897 ORTHO05D010061 1.9e-85 320.9 446 56.5
Ciclev10004784m.g Citrus clementina HOM05D007897 ORTHO05D010061 1.2e-84 318.2 439 54.9
QL06p027281 Quercus lobata HOM05D007897 ORTHO05D010061 4.7e-84 316.2 438 57.8
TAR633G2792 Trochodendron aralioides HOM05D007897 ORTHO05D010061 4.7e-84 316.2 461 56.0
Cfa008662 Carpinus fangiana HOM05D007897 ORTHO05D010061 8.8e-83 312.0 472 54.7
Sabra14G0112700 Salix brachista HOM05D007897 ORTHO05D010061 1.7e-81 307.8 440 55.9
MD04G1021700 Malus domestica HOM05D007897 ORTHO05D010061 4.8e-81 306.2 447 54.6
Haze_11681 Corylus avellana HOM05D007897 ORTHO05D010061 5.3e-80 302.8 454 54.8
Sed0009503 Sechium edule HOM05D007897 ORTHO05D010061 7.7e-79 298.9 448 54.7
VMungo1383G3288 Vigna mungo HOM05D007897 ORTHO05D010061 3.8e-78 296.6 438 54.1
Phvul.001G265200 Phaseolus vulgaris HOM05D007897 ORTHO05D010061 8.5e-78 295.4 435 54.5
TAR633G2399 Trochodendron aralioides HOM05D007897 ORTHO05D010061 1.2e-76 291.6 449 53.7
CSS0029276 Camellia sinensis var. sinensis HOM05D007897 ORTHO05D010061 4.7e-76 289.7 441 54.0
Nn8g41262 Nelumbo nucifera HOM05D007897 ORTHO05D010061 2.3e-75 287.3 452 51.3
RcHm_v2.0_Chr4g0412521 Rosa chinensis HOM05D007897 ORTHO05D010061 8.8e-75 285.4 443 52.8
arahy.Tifrunner.gnm1.ann1.TEUF1S Arachis hypogaea HOM05D007897 ORTHO05D010061 3.3e-74 283.5 439 54.4
arahy.Tifrunner.gnm1.ann1.T7EAWL Arachis hypogaea HOM05D007897 ORTHO05D010061 4.4e-74 283.1 439 54.7
FvH4_4g12861 Fragaria vesca HOM05D007897 ORTHO05D010061 9.1e-72 275.4 439 50.8
CANSAT78G0179 Cannabis sativa HOM05D007897 ORTHO05D010061 5.9e-71 272.7 441 51.7
FAN07G0261 Fragaria x ananassa HOM05D005839 ORTHO05D005686 3.8e-70 270.0 439 50.3
BcaB08g35766 Brassica carinata HOM05D007897 ORTHO05D010061 1.9e-69 267.7 441 48.5
Thhalv10027442m.g Eutrema salsugineum HOM05D007897 ORTHO05D010061 3.2e-69 266.9 442 49.5
THA.LOC104808674 Tarenaya hassleriana HOM05D007897 ORTHO05D010061 3.2e-69 266.9 460 48.0
Glyma.18G003400 Glycine max HOM05D007897 ORTHO05D010061 1.6e-68 264.6 444 51.1
CARHR220230 Cardamine hirsuta HOM05D007897 ORTHO05D010061 2.1e-68 264.2 429 49.7
PSO017G4232 Papaver somniferum HOM05D007897 ORTHO05D010061 3.6e-68 263.5 427 41.5
Gohir.A09G207900 Gossypium hirsutum HOM05D007897 ORTHO05D010061 8.0e-68 262.3 241 56.8
Glyma.11G253700 Glycine max HOM05D007897 ORTHO05D010061 1.0e-67 261.9 444 51.1
PSO063G5193 Papaver somniferum HOM05D007897 ORTHO05D010061 1.4e-67 261.5 433 41.1
Carub.0007s2820 Capsella rubella HOM05D007897 ORTHO05D010061 8.8e-67 258.8 429 48.3
AL7G42190 Arabidopsis lyrata HOM05D007897 ORTHO05D010061 1.5e-66 258.1 443 47.6
Sp6g16180 Schrenkiella parvula HOM05D007897 ORTHO05D010061 3.7e-65 253.4 430 48.4
ATR0807G097 Amborella trichopoda HOM05D007897 ORTHO05D010061 1.1e-64 251.9 438 51.6
MBI07_g06195_MAGBIO Magnolia biondii HOM05D007897 ORTHO05D010061 1.1e-64 251.9 442 52.7
C09p44340 Brassica napus HOM05D007897 ORTHO05D010061 9.1e-64 248.8 434 47.7
Aa31LG9G3200 Aethionema arabicum HOM05D007897 ORTHO05D010061 1.2e-63 248.4 442 49.3
BraA10t43238Z Brassica rapa HOM05D007897 ORTHO05D010061 2.9e-62 243.8 418 48.8
Potri.014G149500 Populus trichocarpa HOM05D007897 ORTHO05D010061 6.6e-62 242.7 372 58.1
AT4G14190 Arabidopsis thaliana HOM05D007897 ORTHO05D010061 1.1e-61 241.9 430 47.0
A10p11440 Brassica napus HOM05D007897 ORTHO05D010061 1.1e-61 241.9 418 48.6
CiPaw.02G062400 Carya illinoinensis HOM05D007897 ORTHO05D010061 3.3e-61 240.4 371 57.4
Cc03_g09150 Coffea canephora HOM05D007897 ORTHO05D010061 1.6e-60 238.0 461 47.7
BolC9t57304H Brassica oleracea HOM05D007897 ORTHO05D010061 2.1e-60 237.7 429 47.3
HanXRQChr01g0022031 Helianthus annuus HOM05D007897 ORTHO05D010061 1.7e-57 228.0 501 42.3
HanXRQChr17g0535531 Helianthus annuus HOM05D007897 ORTHO05D010061 8.3e-57 225.7 502 41.8
CSS0018651 Camellia sinensis var. sinensis HOM05D007897 ORTHO05D010061 1.8e-56 224.6 372 55.6
Lsat_1_v5_gn_1_70121 Lactuca sativa HOM05D007897 ORTHO05D010061 3.5e-55 220.3 426 43.0
ECA248G1461 Erigeron canadensis HOM05D007897 ORTHO05D010061 2.3e-54 217.6 443 42.4
FAN17G1799 Fragaria x ananassa HOM05D005839 ORTHO05D005686 1.1e-53 215.3 392 50.5
Oeu050722.1 Olea europaea HOM05D005839 ORTHO05D009229 5.2e-51 206.5 190 55.3
Atru.chr3.1764 Acer truncatum HOM05D007897 ORTHO05D010061 1.5e-50 204.9 174 56.9
FAN22G1341 Fragaria x ananassa HOM05D007897 ORTHO05D010061 7.5e-50 202.6 255 45.1
BcaC04g20377 Brassica carinata HOM05D007897 ORTHO05D010061 3.7e-49 200.3 429 43.6
Oeu050723.3 Olea europaea HOM05D007897 ORTHO05D009229 3.3e-45 187.2 165 57.0
Manes.05G199032 Manihot esculenta HOM05D007897 ORTHO05D010061 7.5e-42 176.0 305 56.7
HPP92_007232 Vanilla planifolia HOM05D007897 ORTHO05D010061 8.3e-41 172.6 416 44.5
Prupe.1G171300 Prunus persica HOM05D007897 ORTHO05D010061 5.2e-35 153.3 124 58.1
arahy.Tifrunner.gnm1.ann1.EZRM4Y Arachis hypogaea HOM05D007897 ORTHO05D010061 6.0e-31 139.8 319 52.7
Thhalv10027431m.g Eutrema salsugineum HOM05D007897 ORTHO05D010061 9.6e-21 105.9 90 55.6
HanXRQChr09g0243521 Helianthus annuus HOM05D007897 ORTHO05D010061 2.6e-18 97.8 126 42.1
TAR636G0074 Trochodendron aralioides HOM05D007036 ORTHO05D008885 4.4e-18 97.1 248 31.5
Peaxi162Scf00954g00025 Petunia axillaris HOM05D007036 ORTHO05D008885 2.9e-17 94.4 241 32.8
vmacro22700 Vaccinium macrocarpon HOM05D007036 ORTHO05D008885 3.8e-17 94.0 244 32.4
Oeu011819.1 Olea europaea HOM05D007036 ORTHO05D008885 4.9e-17 93.6 241 32.0
Gorai.001G135500 Gossypium raimondii HOM05D007897 ORTHO05D010061 1.1e-16 92.4 76 55.3
Rhsim01G0110100 Rhododendron simsii HOM05D007036 ORTHO05D008885 1.1e-16 92.4 241 31.5
Lj2g0012301 Lotus japonicus HOM05D007036 ORTHO05D008885 1.9e-16 91.7 248 30.2
Gohir.D07G125650 Gossypium hirsutum HOM05D007897 ORTHO05D010061 2.4e-16 91.3 75 54.7
HPP92_028312 Vanilla planifolia HOM05D007036 ORTHO05D008885 3.2e-16 90.9 219 32.9
arahy.Tifrunner.gnm1.ann1.UBG147 Arachis hypogaea HOM05D007036 ORTHO05D008885 1.6e-15 88.6 239 31.0
arahy.Tifrunner.gnm1.ann1.1YAE55 Arachis hypogaea HOM05D007036 ORTHO05D008885 2.1e-15 88.2 239 30.5
Gohir.D01G146401 Gossypium hirsutum HOM05D007897 ORTHO05D010061 2.7e-15 87.8 66 54.5
Lj5P749T15 Lonicera japonica HOM05D007036 ORTHO05D008885 2.7e-15 87.8 242 29.8
Nitab4.5_0000404g0190 Nicotiana tabacum HOM05D007036 ORTHO05D008885 4.6e-15 87.0 241 32.0
Gohir.D13G096925 Gossypium hirsutum HOM05D007897 ORTHO05D010061 6.0e-15 86.7 66 53.0
ATR0626G201 Amborella trichopoda HOM05D007036 ORTHO05D008885 1.0e-14 85.9 219 32.4
Gorai.002G182100 Gossypium raimondii HOM05D007897 ORTHO05D010061 1.0e-14 85.9 64 54.7
SEGI_31150 Sequoiadendron giganteum HOM05D007036 ORTHO05D008885 1.7e-14 85.1 246 29.7
CAN.G106.6 Capsicum annuum HOM05D007036 ORTHO05D008885 2.3e-14 84.7 250 31.2
Duzib168G0358 Durio zibethinus HOM05D007036 ORTHO05D008885 2.3e-14 84.7 248 29.0
Gohir.A06G110000 Gossypium hirsutum HOM05D007036 ORTHO05D008885 3.9e-14 84.0 248 28.6
Gohir.D06G112000 Gossypium hirsutum HOM05D007036 ORTHO05D008885 3.9e-14 84.0 248 28.6
Gorai.010G127600 Gossypium raimondii HOM05D007036 ORTHO05D008885 5.1e-14 83.6 248 28.6
Sopen05g027850 Solanum pennellii HOM05D007036 ORTHO05D008885 5.1e-14 83.6 241 31.1
Thecc.09G196200 Theobroma cacao HOM05D007036 ORTHO05D008885 5.1e-14 83.6 249 30.9
PGR083G2517 Punica granatum HOM05D007036 ORTHO05D008885 6.6e-14 83.2 239 29.3
Cc00_g00150 Coffea canephora HOM05D007036 ORTHO05D008885 8.7e-14 82.8 250 29.6
TWI34G0744 Tripterygium wilfordii HOM05D007036 ORTHO05D008885 8.7e-14 82.8 247 30.4
PGSC0003DMG400013697 Solanum tuberosum HOM05D007036 ORTHO05D008885 1.1e-13 82.4 241 30.7
HanXRQChr09g0261951 Helianthus annuus HOM05D007036 ORTHO05D008885 1.5e-13 82.0 248 28.6
Aqoxy7G02614 Aquilegia oxysepala HOM05D007036 ORTHO05D008885 1.9e-13 81.6 246 29.7
AT3G42630 Arabidopsis thaliana HOM05D007036 ORTHO05D008885 3.3e-13 80.9 247 30.4
MSTRG.5959 Avicennia marina HOM05D007036 ORTHO05D008885 3.3e-13 80.9 243 30.5
Nn5g27062 Nelumbo nucifera HOM05D007036 ORTHO05D008885 3.3e-13 80.9 222 30.6
Ah.07g208320 Amaranthus hybridus HOM05D007036 ORTHO05D008885 4.3e-13 80.5 241 31.5
Sabra18G0121200 Salix brachista HOM05D007036 ORTHO05D008885 4.3e-13 80.5 241 28.2
Sabra18G0128300 Salix brachista HOM05D007036 ORTHO05D008885 4.3e-13 80.5 241 28.2
GSVIVG01032259001 Vitis vinifera HOM05D007036 ORTHO05D008885 1.3e-12 79.0 219 31.1
CARHR153640 Cardamine hirsuta HOM05D007036 ORTHO05D008885 2.1e-12 78.2 247 30.0
Haze_19103 Corylus avellana HOM05D007036 ORTHO05D008885 3.6e-12 77.4 226 29.2
unitig_26.g9126 Utricularia gibba HOM05D007036 ORTHO05D008885 3.6e-12 77.4 249 28.9
Carub.0001s3409 Capsella rubella HOM05D007036 ORTHO05D008885 4.8e-12 77.0 247 29.1
Cfa020750 Carpinus fangiana HOM05D007036 ORTHO05D008885 6.2e-12 76.6 226 29.2
Mapoly0002s0203 Marchantia polymorpha HOM05D007036 ORTHO05D008885 6.2e-12 76.6 464 32.3
Pp3c4_3090 Physcomitrium patens HOM05D007036 ORTHO05D008885 6.2e-12 76.6 419 26.3
Sp5g14950 Schrenkiella parvula HOM05D007036 ORTHO05D008885 6.2e-12 76.6 250 30.0
PSO170G3146 Papaver somniferum HOM05D007036 ORTHO05D008885 1.1e-11 75.9 202 31.2
FAN22G1963 Fragaria x ananassa HOM05D007897 ORTHO05D010061 1.4e-11 75.5 65 53.8
Gohir.D02G105900 Gossypium hirsutum HOM05D007897 ORTHO05D010061 3.1e-11 74.3 52 55.8
AL5G20840 Arabidopsis lyrata HOM05D007036 ORTHO05D008885 6.9e-11 73.2 247 27.5
Zm00001eb035670 Zea mays HOM05D007036 ORTHO05D008885 6.9e-11 73.2 259 28.6
SMO347G0413 Selaginella moellendorffii HOM05D007036 ORTHO05D008885 3.2e-08 64.3 149 32.2
A02p10540 Brassica napus HOM05D007897 ORTHO05D010061 7.9e-07 59.7 60 51.7
Hund24443 Selenicereus undatus HOM05D007897 ORTHO05D010061 3.0e-06 57.8 80 35.0


User provided reference genes

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