Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.L00611 Eucalyptus grandis HOM05D005269 ORTHO05D006429 1.3e-61 239.6 122 100.0
Eucgr.I00374 Eucalyptus grandis HOM05D005269 ORTHO05D006429 1.0e-58 229.9 122 95.9
PGR004G2648 Punica granatum HOM05D005269 ORTHO05D006429 3.3e-41 171.8 122 68.0
Cpa.g.sc43.150 Carica papaya HOM05D005269 ORTHO05D006429 1.1e-36 156.8 128 63.3
CAN.G500.91 Capsicum annuum HOM05D005269 ORTHO05D006429 4.1e-36 154.8 122 65.6
Potri.019G042900 Populus trichocarpa HOM05D005269 ORTHO05D006429 5.4e-36 154.5 122 63.9
Gohir.A11G225900 Gossypium hirsutum HOM05D005269 ORTHO05D006429 2.1e-35 152.5 123 62.6
COL.COLO4_12968 Corchorus olitorius HOM05D005269 ORTHO05D006429 2.7e-35 152.1 125 63.2
Sc16g0010860 Simmondsia chinensis HOM05D005269 ORTHO05D006429 2.7e-35 152.1 122 60.7
Haze_00354 Corylus avellana HOM05D005269 ORTHO05D006429 3.5e-35 151.8 131 62.6
PGSC0003DMG400029616 Solanum tuberosum HOM05D005269 ORTHO05D006429 6.0e-35 151.0 122 61.5
Peaxi162Scf00047g01229 Petunia axillaris HOM05D005269 ORTHO05D006429 7.8e-35 150.6 122 63.1
THA.LOC104820303 Tarenaya hassleriana HOM05D005269 ORTHO05D006429 1.0e-34 150.2 124 61.3
CiPaw.05G211300 Carya illinoinensis HOM05D005269 ORTHO05D006429 1.3e-34 149.8 125 60.8
Gohir.D11G234500 Gossypium hirsutum HOM05D005269 ORTHO05D006429 1.3e-34 149.8 123 61.0
Gohir.A13G001000 Gossypium hirsutum HOM05D005269 ORTHO05D006429 1.7e-34 149.4 123 61.0
Sabra19G0053500 Salix brachista HOM05D005269 ORTHO05D006429 1.7e-34 149.4 126 63.5
Sopen09g034380 Solanum pennellii HOM05D005269 ORTHO05D006429 1.7e-34 149.4 122 61.5
Gorai.007G246800 Gossypium raimondii HOM05D005269 ORTHO05D006429 3.0e-34 148.7 123 61.0
Ciclev10033086m.g Citrus clementina HOM05D005269 ORTHO05D006429 3.9e-34 148.3 124 61.3
Solyc09g091450.3 Solanum lycopersicum HOM05D005269 ORTHO05D006429 3.9e-34 148.3 122 60.7
Duzib128G1401 Durio zibethinus HOM05D005269 ORTHO05D006429 5.1e-34 147.9 128 61.7
RcHm_v2.0_Chr2g0117101 Rosa chinensis HOM05D005269 ORTHO05D006429 1.9e-33 146.0 123 62.6
Thecc.05G226600 Theobroma cacao HOM05D005269 ORTHO05D006429 2.5e-33 145.6 129 64.3
Cc11_g00500 Coffea canephora HOM05D005269 ORTHO05D006429 3.3e-33 145.2 127 56.7
TAR374G1160 Trochodendron aralioides HOM05D005269 ORTHO05D006429 5.6e-33 144.4 123 63.4
Ah.04g159550 Amaranthus hybridus HOM05D005269 ORTHO05D006429 1.2e-32 143.3 124 61.3
Manes.09G130300 Manihot esculenta HOM05D005269 ORTHO05D006429 1.2e-32 143.3 128 55.5
Cfa016104 Carpinus fangiana HOM05D005269 ORTHO05D006429 1.6e-32 142.9 139 58.3
Aa31LG1G5120 Aethionema arabicum HOM05D005269 ORTHO05D006429 2.8e-32 142.1 125 58.4
MD07G1311000 Malus domestica HOM05D005269 ORTHO05D006429 6.2e-32 141.0 127 58.3
AT1G09815 Arabidopsis thaliana HOM05D005269 ORTHO05D006429 8.1e-32 140.6 125 56.0
Dinv17239 Davidia involucrata HOM05D005269 ORTHO05D006429 8.1e-32 140.6 132 54.5
Oeu034712.1 Olea europaea HOM05D005269 ORTHO05D006429 8.1e-32 140.6 124 54.8
TWI32G0228 Tripterygium wilfordii HOM05D005269 ORTHO05D006429 1.1e-31 140.2 140 52.9
Potri.013G076400 Populus trichocarpa HOM05D005269 ORTHO05D006429 1.4e-31 139.8 123 61.0
A06p06530 Brassica napus HOM05D005269 ORTHO05D006429 1.8e-31 139.4 125 56.0
CARHR009820 Cardamine hirsuta HOM05D005269 ORTHO05D006429 1.8e-31 139.4 126 60.3
Sp1g08440 Schrenkiella parvula HOM05D005269 ORTHO05D006429 1.8e-31 139.4 125 58.4
Actinidia33802 Actinidia chinensis HOM05D005269 ORTHO05D006429 2.4e-31 139.0 116 58.6
Prupe.2G330200 Prunus persica HOM05D005269 ORTHO05D006429 2.4e-31 139.0 129 58.1
BcaC05g24843 Brassica carinata HOM05D005269 ORTHO05D006429 3.1e-31 138.7 125 56.0
BolC5t29544H Brassica oleracea HOM05D005269 ORTHO05D006429 3.1e-31 138.7 125 56.0
Thhalv10009118m.g Eutrema salsugineum HOM05D005269 ORTHO05D006429 3.1e-31 138.7 125 56.8
Thecc.05G226200 Theobroma cacao HOM05D005269 ORTHO05D006429 3.1e-31 138.7 129 61.2
BraA06t23864Z Brassica rapa HOM05D005269 ORTHO05D006429 4.0e-31 138.3 125 55.2
MELO3C005384.2 Cucumis melo HOM05D005269 ORTHO05D006429 4.0e-31 138.3 126 55.6
Atru.chr12.1824 Acer truncatum HOM05D005269 ORTHO05D006429 5.2e-31 137.9 120 58.3
Carub.0001s0919 Capsella rubella HOM05D005269 ORTHO05D006429 5.2e-31 137.9 125 56.8
ClCG01G005450 Citrullus lanatus HOM05D005269 ORTHO05D006429 6.8e-31 137.5 128 55.5
MSTRG.4345 Avicennia marina HOM05D005269 ORTHO05D006429 1.2e-30 136.7 120 57.5
EL10Ac4g10063 Beta vulgaris HOM05D005269 ORTHO05D006429 1.2e-30 136.7 127 58.3
FvH4_1g22780 Fragaria vesca HOM05D005269 ORTHO05D006429 1.2e-30 136.7 122 58.2
Sabra13G0065600 Salix brachista HOM05D005269 ORTHO05D006429 1.5e-30 136.3 126 59.5
AL1G20410 Arabidopsis lyrata HOM05D005269 ORTHO05D006429 2.0e-30 136.0 125 56.0
FAN26G3478 Fragaria x ananassa HOM05D005269 ORTHO05D006429 2.0e-30 136.0 122 56.6
TAR629G0465 Trochodendron aralioides HOM05D005269 ORTHO05D006429 7.6e-30 134.0 123 58.5
Thecc.05G226400 Theobroma cacao HOM05D005269 ORTHO05D006429 9.9e-30 133.7 128 60.2
Psat7g094200 Pisum sativum HOM05D005269 ORTHO05D006429 1.3e-29 133.3 119 57.1
DCAR_009029 Daucus carota HOM05D005269 ORTHO05D006429 2.2e-29 132.5 125 57.6
FAN19G2412 Fragaria x ananassa HOM05D005269 ORTHO05D006429 2.2e-29 132.5 122 56.6
FAN23G2200 Fragaria x ananassa HOM05D005269 ORTHO05D006429 2.2e-29 132.5 115 56.5
Nn1g09278 Nelumbo nucifera HOM05D005269 ORTHO05D006429 2.2e-29 132.5 125 57.6
SGA_v2.0_scaffold18G08210 Striga asiatica HOM05D005269 ORTHO05D006429 2.2e-29 132.5 119 58.0
CsaV3_5G005690 Cucumis sativus L. HOM05D005269 ORTHO05D006429 2.9e-29 132.1 126 54.0
Aqoxy6G02173 Aquilegia oxysepala HOM05D005269 ORTHO05D006429 3.8e-29 131.7 89 67.4
FAN28G1075 Fragaria x ananassa HOM05D005269 ORTHO05D006429 3.8e-29 131.7 122 55.7
ATR0568G075 Amborella trichopoda HOM05D005269 ORTHO05D006429 4.9e-29 131.3 116 56.0
MBI04_g30790_MAGBIO Magnolia biondii HOM05D005269 ORTHO05D006429 8.4e-29 130.6 118 55.1
arahy.Tifrunner.gnm1.ann1.UWAC6K Arachis hypogaea HOM05D005269 ORTHO05D006429 1.4e-28 129.8 124 58.9
Sed0009591 Sechium edule HOM05D005269 ORTHO05D006429 1.4e-28 129.8 128 51.6
GSVIVG01024265001 Vitis vinifera HOM05D005269 ORTHO05D006429 3.2e-28 128.6 121 58.7
Lj7A504G56 Lonicera japonica HOM05D005269 ORTHO05D006429 7.1e-28 127.5 126 54.8
Phvul.002G201200 Phaseolus vulgaris HOM05D005269 ORTHO05D006429 7.1e-28 127.5 118 55.9
Hund07408 Selenicereus undatus HOM05D005269 ORTHO05D006429 9.3e-28 127.1 126 57.1
Glyma.05G124300 Glycine max HOM05D005269 ORTHO05D006429 1.2e-27 126.7 123 55.3
AUR62000236 Chenopodium quinoa HOM05D005269 ORTHO05D006429 2.1e-27 125.9 126 60.3
Peaxi162Scf00536g00089 Petunia axillaris HOM05D005269 ORTHO05D006429 2.7e-27 125.6 123 52.0
Psat7g094160 Pisum sativum HOM05D005269 ORTHO05D006429 2.7e-27 125.6 119 53.8
unitig_52.g17685 Utricularia gibba HOM05D005269 ORTHO05D006429 4.6e-27 124.8 118 50.8
Phvul.002G201100 Phaseolus vulgaris HOM05D005269 ORTHO05D006429 1.7e-26 122.9 123 55.3
Rhsim09G0214100 Rhododendron simsii HOM05D005269 ORTHO05D006429 1.7e-26 122.9 133 51.1
Ca_18303_v3 Cicer arietinum L. HOM05D005269 ORTHO05D006429 2.3e-26 122.5 114 54.4
Hma1.2p1_0419F.1_g149570 Hydrangea macrophylla HOM05D005269 ORTHO05D006429 2.3e-26 122.5 124 54.8
Migut.H00004 Erythranthe guttata HOM05D005269 ORTHO05D006429 3.0e-26 122.1 125 53.6
arahy.Tifrunner.gnm1.ann1.FKKB7G Arachis hypogaea HOM05D005269 ORTHO05D006429 5.1e-26 121.3 124 54.8
AUR62006583 Chenopodium quinoa HOM05D005269 ORTHO05D006429 8.7e-26 120.6 126 58.7
Ah.06g194960 Amaranthus hybridus HOM05D005269 ORTHO05D006429 1.1e-25 120.2 123 52.8
Nitab4.5_0001066g0040 Nicotiana tabacum HOM05D005269 ORTHO05D006429 1.5e-25 119.8 132 52.3
Nitab4.5_0001769g0050 Nicotiana tabacum HOM05D005269 ORTHO05D006429 1.5e-25 119.8 123 52.8
ECA232G2798 Erigeron canadensis HOM05D005251 ORTHO05D006680 4.3e-25 118.2 124 50.8
vmacro22190 Vaccinium macrocarpon HOM05D005269 ORTHO05D006429 7.3e-25 117.5 116 54.3
Lsat_1_v5_gn_9_46181 Lactuca sativa HOM05D005269 ORTHO05D006429 9.6e-25 117.1 123 52.8
PGSC0003DMG400019109 Solanum tuberosum HOM05D005269 ORTHO05D006429 9.6e-25 117.1 135 50.4
PSO063G4725 Papaver somniferum HOM05D005269 ORTHO05D006429 6.2e-24 114.4 123 51.2
Sopen05g032040 Solanum pennellii HOM05D005269 ORTHO05D006429 6.2e-24 114.4 134 53.7
Medtr4g094465 Medicago truncatula HOM05D005269 ORTHO05D006429 8.1e-24 114.0 115 56.5
HanXRQChr17g0540921 Helianthus annuus HOM05D005269 ORTHO05D006429 1.1e-23 113.6 121 51.2
Solyc05g053520.3 Solanum lycopersicum HOM05D005269 ORTHO05D006429 2.4e-23 112.5 134 53.7
VMungo0251G2623 Vigna mungo HOM05D005269 ORTHO05D006429 2.4e-23 112.5 122 50.0
PSO782G4777 Papaver somniferum HOM05D005269 ORTHO05D006429 6.9e-23 110.9 123 49.6
CSS0034044 Camellia sinensis var. sinensis HOM05D005269 ORTHO05D006429 2.6e-22 109.0 117 50.4
Lj4g0020860 Lotus japonicus HOM05D005269 ORTHO05D006429 2.2e-21 105.9 116 50.9
CANSAT78G2182 Cannabis sativa HOM05D005269 ORTHO05D006429 2.9e-21 105.5 115 49.6
CDE11G1263 Ceratophyllum demersum HOM05D005269 ORTHO05D006429 3.8e-21 105.1 122 45.9
CDE02G3654 Ceratophyllum demersum HOM05D005269 ORTHO05D006429 4.9e-21 104.8 123 48.8
Gorai.013G185000 Gossypium raimondii HOM05D005269 ORTHO05D006429 6.4e-21 104.4 121 50.4
Gohir.D13G162800 Gossypium hirsutum HOM05D005269 ORTHO05D006429 8.4e-21 104.0 121 51.2
Sed0022400 Sechium edule HOM05D005269 ORTHO05D006429 8.4e-21 104.0 122 47.5
Glyma.08G079500 Glycine max HOM05D005269 ORTHO05D006429 7.1e-20 100.9 110 50.0
Zm00001eb318480 Zea mays HOM05D005269 ORTHO05D006429 7.1e-20 100.9 130 46.2
SEGI_20967 Sequoiadendron giganteum HOM05D005269 ORTHO05D006429 9.3e-20 100.5 140 41.4
CAN.G17.24 Capsicum annuum HOM05D005269 ORTHO05D006429 1.2e-19 100.1 126 46.8
HPP92_001933 Vanilla planifolia HOM05D005269 ORTHO05D006429 1.2e-19 100.1 130 43.1
Mapoly0002s0066 Marchantia polymorpha HOM05D005269 ORTHO05D006429 3.5e-19 98.6 130 42.3
Lalb_Chr07g0189121 Lupinus albus HOM05D005269 ORTHO05D006429 3.9e-18 95.1 122 44.3
C05p07920 Brassica napus HOM05D005269 ORTHO05D006429 1.9e-17 92.8 65 61.5
TPR.G23807 Trifolium pratense HOM05D005269 ORTHO05D006429 1.9e-17 92.8 116 44.8
Gohir.A13G157700 Gossypium hirsutum HOM05D005269 ORTHO05D006429 7.3e-17 90.9 116 45.7
Pp3c4_21450 Physcomitrium patens HOM05D005269 ORTHO05D006429 8.1e-16 87.4 139 43.2
Os09g0520100 Oryza sativa ssp. japonica HOM05D005269 ORTHO05D006429 2.4e-15 85.9 130 41.5
Glyma.15G135000 Glycine max HOM05D005269 ORTHO05D006429 6.9e-15 84.3 110 41.8
Actinidia04559 Actinidia chinensis HOM05D005269 ORTHO05D006429 2.9e-13 79.0 84 50.0
CDE02G2358 Ceratophyllum demersum HOM05D005269 ORTHO05D006429 1.1e-12 77.0 51 64.7
Phvul.006G123900 Phaseolus vulgaris HOM05D005269 ORTHO05D006429 4.2e-12 75.1 61 49.2
SEGI_01057 Sequoiadendron giganteum HOM05D005269 ORTHO05D006429 4.2e-12 75.1 84 38.1
TPR.G31897 Trifolium pratense HOM05D005269 ORTHO05D006429 4.2e-12 75.1 109 42.2
AUR62032913 Chenopodium quinoa HOM05D005269 ORTHO05D006429 7.9e-11 70.9 51 64.7
Medtr4g094458 Medicago truncatula HOM05D005269 ORTHO05D006429 1.0e-10 70.5 104 39.4
SMO134G0019 Selaginella moellendorffii HOM05D001491 ORTHO05D001443 3.0e-10 68.9 124 35.5
PRCOL_00003345 Prasinoderma coloniale HOM05D005269 ORTHO05D006429 5.1e-10 68.2 117 35.9
SEGI_08095 Sequoiadendron giganteum HOM05D005269 ORTHO05D006429 6.7e-10 67.8 131 30.5
Medtr1g105865 Medicago truncatula HOM05D005269 ORTHO05D006429 3.3e-09 65.5 109 39.4
AagrBONN_evm.TU.Sc2ySwM_344.2125 Anthoceros agrestis HOM05D005269 ORTHO05D006429 4.3e-09 65.1 123 33.3
Mapoly0080s0095 Marchantia polymorpha HOM05D005269 ORTHO05D006429 5.6e-09 64.7 59 50.8
Phvul.006G123800 Phaseolus vulgaris HOM05D005269 ORTHO05D006429 1.8e-07 59.7 86 43.0
Os08g0163300 Oryza sativa ssp. japonica HOM05D005269 ORTHO05D006429 2.4e-07 59.3 69 40.6
MCO11G533 Micromonas commoda HOM05D005269 ORTHO05D006429 4.0e-07 58.5 76 40.8
Nitab4.5_0011997g0010 Nicotiana tabacum HOM05D005269 ORTHO05D006429 4.0e-07 58.5 64 56.2
Nitab4.5_0002284g0060 Nicotiana tabacum HOM05D005269 ORTHO05D006429 1.5e-06 56.6 64 54.7
Zm00001eb415390 Zea mays HOM05D005269 ORTHO05D006429 2.0e-06 56.2 62 46.8


User provided reference genes

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