Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.L00579 Eucalyptus grandis HOM05D007297 ORTHO05D009352 1.1e-66 256.5 130 100.0
Eucgr.H04994 Eucalyptus grandis HOM05D007297 ORTHO05D009352 2.7e-57 225.3 116 98.3
PGR042G0917 Punica granatum HOM05D007297 ORTHO05D009352 1.9e-18 96.3 122 50.8
TWI79G0145 Tripterygium wilfordii HOM05D007297 ORTHO05D009352 1.9e-10 69.7 72 47.2
COL.COLO4_33139 Corchorus olitorius HOM05D007297 ORTHO05D009352 1.2e-09 67.0 73 47.9
Gohir.A01G011500 Gossypium hirsutum HOM05D007297 ORTHO05D009352 1.3e-08 63.5 30 83.3
Gorai.002G014500 Gossypium raimondii HOM05D007297 ORTHO05D009352 1.3e-08 63.5 30 83.3
Thecc.02G146900 Theobroma cacao HOM05D007297 ORTHO05D009352 1.3e-08 63.5 30 86.7
PSO170G5512 Papaver somniferum HOM05D007297 ORTHO05D009352 1.7e-08 63.2 65 47.7
Phvul.007G061600 Phaseolus vulgaris HOM05D007297 ORTHO05D009352 1.7e-08 63.2 34 73.5
Thhalv10025549m.g Eutrema salsugineum HOM05D007297 ORTHO05D009352 3.9e-08 62.0 110 38.2
GSVIVG01023865001 Vitis vinifera HOM05D007297 ORTHO05D009352 5.1e-08 61.6 125 39.2
CiPaw.05G093700 Carya illinoinensis HOM05D007297 ORTHO05D009352 6.6e-08 61.2 75 49.3
Gohir.D01G012700 Gossypium hirsutum HOM05D007297 ORTHO05D009352 6.6e-08 61.2 30 80.0
Potri.004G207400 Populus trichocarpa HOM05D007297 ORTHO05D009352 6.6e-08 61.2 89 41.6
AT4G38225 Arabidopsis thaliana HOM05D007297 ORTHO05D009352 8.7e-08 60.8 107 37.4
Sp7g37510 Schrenkiella parvula HOM05D007297 ORTHO05D009352 8.7e-08 60.8 67 46.3
TAR381G0094 Trochodendron aralioides HOM05D007297 ORTHO05D009352 8.7e-08 60.8 89 44.9
PGSC0003DMG400016829 Solanum tuberosum HOM05D007297 ORTHO05D009352 1.1e-07 60.5 54 46.3
arahy.Tifrunner.gnm1.ann1.F5MDAV Arachis hypogaea HOM05D007297 ORTHO05D009352 1.5e-07 60.1 37 59.5
Sopen10g027070 Solanum pennellii HOM05D007297 ORTHO05D009352 1.5e-07 60.1 82 45.1
Manes.15G114700 Manihot esculenta HOM05D007297 ORTHO05D009352 1.9e-07 59.7 85 44.7
AL7G47220 Arabidopsis lyrata HOM05D007297 ORTHO05D009352 2.5e-07 59.3 97 40.2
BraA06t23859Z Brassica rapa HOM05D007027 ORTHO05D008765 2.5e-07 59.3 103 35.0
CANSAT25G3874 Cannabis sativa HOM05D007297 ORTHO05D009352 2.5e-07 59.3 43 58.1
Ca_10853_v3 Cicer arietinum L. HOM05D007297 ORTHO05D009352 2.5e-07 59.3 41 58.5
arahy.Tifrunner.gnm1.ann1.114EL0 Arachis hypogaea HOM05D007297 ORTHO05D009352 3.3e-07 58.9 37 59.5
A06p06480 Brassica napus HOM05D007027 ORTHO05D008765 3.3e-07 58.9 103 35.0
C05p07890 Brassica napus HOM05D007027 ORTHO05D008765 3.3e-07 58.9 95 36.8
Ciclev10028691m.g Citrus clementina HOM05D007297 ORTHO05D009352 3.3e-07 58.9 117 35.9
HanXRQChr16g0515151 Helianthus annuus HOM05D007297 ORTHO05D009352 3.3e-07 58.9 75 41.3
MBI05_g18176_MAGBIO Magnolia biondii HOM05D007297 ORTHO05D009352 3.3e-07 58.9 32 71.9
QL11p056524 Quercus lobata HOM05D007297 ORTHO05D009352 3.3e-07 58.9 74 40.5
Lsat_1_v5_gn_8_120880 Lactuca sativa HOM05D007297 ORTHO05D009352 4.3e-07 58.5 64 48.4
Prupe.8G180900 Prunus persica HOM05D007297 ORTHO05D009352 4.3e-07 58.5 36 72.2
VMungo0720G0116 Vigna mungo HOM05D007297 ORTHO05D009352 4.3e-07 58.5 34 70.6
Ah.01g017630 Amaranthus hybridus HOM05D007297 ORTHO05D009352 5.6e-07 58.2 31 74.2
AL7G10130 Arabidopsis lyrata HOM05D002051 ORTHO05D002041 5.6e-07 58.2 35 62.9
unitig_26.g9984 Utricularia gibba HOM05D007297 ORTHO05D009352 5.6e-07 58.2 99 41.4
Actinidia32005 Actinidia chinensis HOM05D007297 ORTHO05D009352 7.3e-07 57.8 28 82.1
BolC5t29540H Brassica oleracea HOM05D007027 ORTHO05D008765 7.3e-07 57.8 109 37.6
Rhsim05G0044900 Rhododendron simsii HOM05D007297 ORTHO05D009352 7.3e-07 57.8 111 36.9
Solyc10g074580.2 Solanum lycopersicum HOM05D007297 ORTHO05D009352 7.3e-07 57.8 117 40.2
Migut.N01363 Erythranthe guttata HOM05D007297 ORTHO05D009352 9.6e-07 57.4 114 34.2
Nn5g31034 Nelumbo nucifera HOM05D007297 ORTHO05D009352 9.6e-07 57.4 68 48.5
Carub.0007s0016 Capsella rubella HOM05D007297 ORTHO05D009352 1.3e-06 57.0 109 38.5
Glyma.10G244200 Glycine max HOM05D007297 ORTHO05D009352 1.3e-06 57.0 37 64.9
THA.LOC104804081 Tarenaya hassleriana HOM05D007297 ORTHO05D009352 1.6e-06 56.6 33 66.7
Duzib132G0252 Durio zibethinus HOM05D007297 ORTHO05D009352 2.1e-06 56.2 121 40.5
Lj5g0024553 Lotus japonicus HOM05D007297 ORTHO05D009352 2.1e-06 56.2 37 56.8
Nitab4.5_0001700g0150 Nicotiana tabacum HOM05D007297 ORTHO05D009352 2.1e-06 56.2 33 63.6
Cpa.g.sc60.2 Carica papaya HOM05D007297 ORTHO05D009352 2.8e-06 55.8 30 70.0
Cfa010687 Carpinus fangiana HOM05D007297 ORTHO05D009352 2.8e-06 55.8 33 69.7
ECA233G4247 Erigeron canadensis HOM05D007297 ORTHO05D009352 2.8e-06 55.8 85 38.8
Medtr1g102880 Medicago truncatula HOM05D007297 ORTHO05D009352 2.8e-06 55.8 37 62.2
CARHR294010 Cardamine hirsuta HOM05D007297 ORTHO05D009352 3.6e-06 55.5 94 36.2
MD10G1142400 Malus domestica HOM05D007297 ORTHO05D009352 3.6e-06 55.5 42 59.5
MD11G1100600 Malus domestica HOM05D007297 ORTHO05D009352 3.6e-06 55.5 29 79.3
Dinv14179 Davidia involucrata HOM05D007297 ORTHO05D009352 4.8e-06 55.1 33 69.7
Psat6g204280 Pisum sativum HOM05D007297 ORTHO05D009352 4.8e-06 55.1 37 59.5
ATR0807G066 Amborella trichopoda HOM05D007297 ORTHO05D009352 6.2e-06 54.7 67 44.8
AUR62010181 Chenopodium quinoa HOM05D007297 ORTHO05D009352 6.2e-06 54.7 35 62.9
AUR62013182 Chenopodium quinoa HOM05D007297 ORTHO05D009352 6.2e-06 54.7 76 42.1
ClCG02G003330 Citrullus lanatus HOM05D007297 ORTHO05D009352 8.1e-06 54.3 117 32.5
DCAR_006267 Daucus carota HOM05D007297 ORTHO05D009352 8.1e-06 54.3 30 70.0


User provided reference genes

Program Settings