Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.L00543 Eucalyptus grandis HOM05D005487 ORTHO05D007280 4.2e-275 950.7 454 100.0
PGR004G0814 Punica granatum HOM05D005487 ORTHO05D007280 1.6e-221 772.7 452 81.4
Atru.chr1.2460 Acer truncatum HOM05D005487 ORTHO05D007280 2.9e-215 751.9 452 78.5
FvH4_3g01030 Fragaria vesca HOM05D005487 ORTHO05D007280 1.4e-214 749.6 452 78.8
Prupe.4G011100 Prunus persica HOM05D005487 ORTHO05D007280 7.8e-213 743.8 452 78.1
Thecc.06G232800 Theobroma cacao HOM05D005487 ORTHO05D007280 7.8e-213 743.8 451 78.5
FAN21G2054 Fragaria x ananassa HOM05D005487 ORTHO05D007280 1.0e-212 743.4 452 78.5
Duzib192G1033 Durio zibethinus HOM05D005487 ORTHO05D007280 1.3e-212 743.0 450 78.4
CiPaw.10G077700 Carya illinoinensis HOM05D005487 ORTHO05D007280 2.3e-212 742.3 451 77.6
RcHm_v2.0_Chr5g0001571 Rosa chinensis HOM05D005487 ORTHO05D007280 6.6e-212 740.7 450 77.8
MD10G1331100 Malus domestica HOM05D005487 ORTHO05D007280 1.1e-211 740.0 450 77.6
Nn1g07355 Nelumbo nucifera HOM05D005487 ORTHO05D007280 3.6e-210 734.9 452 76.5
QL05p069756 Quercus lobata HOM05D005487 ORTHO05D007280 1.4e-209 733.0 453 76.6
Cfa000109 Carpinus fangiana HOM05D005487 ORTHO05D007280 4.0e-209 731.5 451 76.7
Potri.006G009200 Populus trichocarpa HOM05D005487 ORTHO05D007280 6.8e-209 730.7 452 76.1
CANSAT56G2574 Cannabis sativa HOM05D005487 ORTHO05D007280 1.2e-208 729.9 450 76.9
TWI38G0871 Tripterygium wilfordii HOM05D005487 ORTHO05D007280 2.0e-208 729.2 454 75.3
Manes.09G070300 Manihot esculenta HOM05D005487 ORTHO05D007280 4.4e-208 728.0 451 76.3
TAR724G0004 Trochodendron aralioides HOM05D005487 ORTHO05D007280 7.5e-208 727.2 452 76.1
Cpa.g.sc75.119 Carica papaya HOM05D005487 ORTHO05D007280 1.7e-207 726.1 450 76.2
Gorai.009G182900 Gossypium raimondii HOM05D005487 ORTHO05D007280 2.9e-207 725.3 450 76.9
CSS0007892 Camellia sinensis var. sinensis HOM05D005487 ORTHO05D007280 4.9e-207 724.5 452 75.9
Gohir.A05G174500 Gossypium hirsutum HOM05D005487 ORTHO05D007280 8.3e-207 723.8 450 76.9
Nn1g03329 Nelumbo nucifera HOM05D005487 ORTHO05D007280 1.4e-206 723.0 450 76.7
Ciclev10015367m.g Citrus clementina HOM05D005487 ORTHO05D007280 1.9e-206 722.6 451 75.6
Nitab4.5_0000143g0260 Nicotiana tabacum HOM05D005487 ORTHO05D007280 4.1e-206 721.5 454 74.7
Gohir.D05G177500 Gossypium hirsutum HOM05D005487 ORTHO05D007280 7.0e-206 720.7 450 76.4
Sp1g10720 Schrenkiella parvula HOM05D005487 ORTHO05D007280 7.0e-206 720.7 449 73.9
TAR629G3393 Trochodendron aralioides HOM05D005487 ORTHO05D007280 9.2e-206 720.3 452 74.1
EL10Ac8g20177 Beta vulgaris HOM05D005487 ORTHO05D007280 1.2e-205 719.9 454 74.0
Carub.0001s1173 Capsella rubella HOM05D005487 ORTHO05D007280 2.0e-205 719.2 449 74.4
Oeu044422.1 Olea europaea HOM05D005487 ORTHO05D007280 2.7e-205 718.8 454 74.0
AL1G23300 Arabidopsis lyrata HOM05D005487 ORTHO05D007280 3.5e-205 718.4 450 74.0
MBI19_g29429_MAGBIO Magnolia biondii HOM05D005487 ORTHO05D007280 6.0e-205 717.6 454 74.4
Lj2C262G3 Lonicera japonica HOM05D005487 ORTHO05D007280 7.8e-205 717.2 446 76.0
Nitab4.5_0001198g0060 Nicotiana tabacum HOM05D005487 ORTHO05D007280 1.7e-204 716.1 454 74.4
Actinidia11881 Actinidia chinensis HOM05D005487 ORTHO05D007280 3.9e-204 714.9 454 74.9
Actinidia26862 Actinidia chinensis HOM05D005487 ORTHO05D007280 1.1e-203 713.4 451 74.3
AT1G12050 Arabidopsis thaliana HOM05D005487 ORTHO05D007280 1.5e-203 713.0 450 74.0
BolC5t29858H Brassica oleracea HOM05D005487 ORTHO05D007280 1.9e-203 712.6 449 73.7
Sed0025030 Sechium edule HOM05D005487 ORTHO05D007280 2.5e-203 712.2 452 73.9
THA.LOC104809472 Tarenaya hassleriana HOM05D005487 ORTHO05D007280 2.5e-203 712.2 449 75.7
BcaB02g06431 Brassica carinata HOM05D005487 ORTHO05D007280 3.3e-203 711.8 450 73.8
GSVIVG01003351001 Vitis vinifera HOM05D005487 ORTHO05D007280 7.3e-203 710.7 451 74.1
FAN25G0861 Fragaria x ananassa HOM05D005487 ORTHO05D007280 1.6e-202 709.5 430 78.8
Sopen11g006950 Solanum pennellii HOM05D005487 ORTHO05D007280 2.1e-202 709.1 452 73.0
HanXRQChr10g0284101 Helianthus annuus HOM05D005487 ORTHO05D007280 3.6e-202 708.4 453 74.2
Gohir.A06G205600 Gossypium hirsutum HOM05D005487 ORTHO05D007280 4.7e-202 708.0 450 74.9
CARHR012410 Cardamine hirsuta HOM05D005487 ORTHO05D007280 8.1e-202 707.2 449 72.8
Thhalv10007724m.g Eutrema salsugineum HOM05D005487 ORTHO05D007280 1.1e-201 706.8 449 73.5
Hma1.2p1_0135F.1_g061730 Hydrangea macrophylla HOM05D005487 ORTHO05D007280 1.1e-201 706.8 454 73.8
Gorai.010G250300 Gossypium raimondii HOM05D005487 ORTHO05D007280 1.4e-201 706.4 450 74.9
arahy.Tifrunner.gnm1.ann1.8PBE23 Arachis hypogaea HOM05D005487 ORTHO05D007280 3.1e-201 705.3 451 72.1
Cc09_g00910 Coffea canephora HOM05D005487 ORTHO05D007280 3.1e-201 705.3 451 72.9
Solyc11g012160.2 Solanum lycopersicum HOM05D005487 ORTHO05D007280 3.1e-201 705.3 452 72.3
Gohir.D06G215900 Gossypium hirsutum HOM05D005487 ORTHO05D007280 6.8e-201 704.1 450 74.7
Rhsim13G0146300 Rhododendron simsii HOM05D005487 ORTHO05D007280 1.2e-200 703.4 479 70.6
CAN.G1186.29 Capsicum annuum HOM05D005487 ORTHO05D007280 1.5e-200 703.0 453 73.3
arahy.Tifrunner.gnm1.ann1.61KG5W Arachis hypogaea HOM05D005487 ORTHO05D007280 2.6e-200 702.2 451 71.8
PSO764G0115 Papaver somniferum HOM05D005487 ORTHO05D007280 2.6e-200 702.2 451 72.9
RhsimUnG0109400 Rhododendron simsii HOM05D005487 ORTHO05D007280 2.6e-200 702.2 479 70.6
AUR62021869 Chenopodium quinoa HOM05D005487 ORTHO05D007280 6.4e-199 697.6 452 72.8
Psat1g176520 Pisum sativum HOM05D005487 ORTHO05D007280 6.4e-199 697.6 449 71.7
Aa31LG1G2680 Aethionema arabicum HOM05D005487 ORTHO05D007280 1.4e-198 696.4 449 72.4
PSO210G3736 Papaver somniferum HOM05D005487 ORTHO05D007280 1.4e-198 696.4 450 72.4
Peaxi162Scf00558g00518 Petunia axillaris HOM05D005487 ORTHO05D007280 3.2e-198 695.3 494 68.4
COL.COLO4_31878 Corchorus olitorius HOM05D005487 ORTHO05D007280 5.4e-198 694.5 448 73.4
Lalb_Chr15g0087971 Lupinus albus HOM05D005487 ORTHO05D007280 7.1e-198 694.1 450 71.6
MELO3C007433.2 Cucumis melo HOM05D005487 ORTHO05D007280 1.6e-197 693.0 454 73.3
Ca_00719_v3 Cicer arietinum L. HOM05D005487 ORTHO05D007280 2.1e-197 692.6 448 71.9
CsaV3_6G048520 Cucumis sativus L. HOM05D005487 ORTHO05D007280 3.5e-197 691.8 454 73.1
Medtr2g025640 Medicago truncatula HOM05D005487 ORTHO05D007280 1.0e-196 690.3 448 71.0
ClCG01G021500 Citrullus lanatus HOM05D005487 ORTHO05D007280 2.3e-196 689.1 453 72.8
Phvul.006G143500 Phaseolus vulgaris HOM05D005487 ORTHO05D007280 5.1e-196 688.0 449 70.8
TPR.G13057 Trifolium pratense HOM05D005487 ORTHO05D007280 6.6e-196 687.6 449 70.8
Glyma.15G114300 Glycine max HOM05D005487 ORTHO05D007280 2.5e-195 685.6 449 70.2
MSTRG.16025 Avicennia marina HOM05D005487 ORTHO05D007280 3.3e-195 685.3 452 71.2
Dinv07399 Davidia involucrata HOM05D005487 ORTHO05D007280 3.3e-195 685.3 433 74.8
Lsat_1_v5_gn_8_64401 Lactuca sativa HOM05D005487 ORTHO05D007280 3.3e-195 685.3 457 71.8
A06p09440 Brassica napus HOM05D005487 ORTHO05D007280 1.2e-194 683.3 434 73.7
BcaC05g25225 Brassica carinata HOM05D005487 ORTHO05D007280 1.6e-194 682.9 435 73.6
Lj6g0015557 Lotus japonicus HOM05D005487 ORTHO05D007280 1.6e-194 682.9 448 71.0
BraA06t24129Z Brassica rapa HOM05D005487 ORTHO05D007280 2.8e-194 682.2 434 73.5
VMungo0540G1792 Vigna mungo HOM05D005487 ORTHO05D007280 2.8e-194 682.2 449 70.6
C05p11110 Brassica napus HOM05D005487 ORTHO05D007280 8.1e-194 680.6 435 73.3
ATR1101G021 Amborella trichopoda HOM05D005487 ORTHO05D007280 1.5e-192 676.4 452 71.2
Glyma.09G010000 Glycine max HOM05D005487 ORTHO05D007280 1.5e-192 676.4 449 69.9
SalBow8G2024 Salvia bowleyana HOM05D005487 ORTHO05D007280 1.5e-192 676.4 451 71.0
Aqoxy1G04106 Aquilegia oxysepala HOM05D005487 ORTHO05D007280 9.9e-192 673.7 455 69.7
PGSC0003DMG400013273 Solanum tuberosum HOM05D005487 ORTHO05D007280 9.9e-192 673.7 539 61.6
vmacro03645 Vaccinium macrocarpon HOM05D005487 ORTHO05D007280 5.4e-190 667.9 441 73.0
Hund23409 Selenicereus undatus HOM05D005487 ORTHO05D007280 4.6e-189 664.8 428 73.6
HPP92_027542 Vanilla planifolia HOM05D005487 ORTHO05D007280 5.1e-188 661.4 459 68.6
HPP92_003014 Vanilla planifolia HOM05D005487 ORTHO05D007280 1.1e-187 660.2 458 68.3
Sopen04g006840 Solanum pennellii HOM05D005487 ORTHO05D007280 1.9e-187 659.4 452 69.5
SGA_v2.0_scaffold7G03757 Striga asiatica HOM05D005487 ORTHO05D007280 4.3e-187 658.3 461 69.4
PGSC0003DMG400023608 Solanum tuberosum HOM05D005487 ORTHO05D007280 2.1e-186 656.0 452 69.0
CAN.G1263.14 Capsicum annuum HOM05D005487 ORTHO05D007280 4.7e-186 654.8 453 68.7
Haze_06922 Corylus avellana HOM05D005487 ORTHO05D007280 1.8e-185 652.9 465 68.4
Peaxi162Scf00442g00414 Petunia axillaris HOM05D005487 ORTHO05D007280 5.2e-185 651.4 491 63.7
Zm00001eb236160 Zea mays HOM05D005487 ORTHO05D007280 4.4e-184 648.3 451 67.8
Os02g0196800 Oryza sativa ssp. japonica HOM05D005487 ORTHO05D007280 2.2e-183 646.0 452 66.4
Solyc04g014730.4 Solanum lycopersicum HOM05D005487 ORTHO05D007280 3.8e-183 645.2 445 69.0
Haze_06917 Corylus avellana HOM05D005487 ORTHO05D007280 1.4e-182 643.3 489 65.2
CDE07G0927 Ceratophyllum demersum HOM05D005487 ORTHO05D007280 3.0e-180 635.6 461 66.8
unitig_0.g999 Utricularia gibba HOM05D005487 ORTHO05D007280 8.7e-180 634.0 437 68.6
Sabra06G0007000 Salix brachista HOM05D005487 ORTHO05D007280 1.6e-173 613.2 451 67.4
AUR62012785 Chenopodium quinoa HOM05D005487 ORTHO05D007280 5.6e-171 604.7 434 68.0
DCAR_027826 Daucus carota HOM05D005487 ORTHO05D007280 5.6e-171 604.7 451 65.2
Duzib235G0086 Durio zibethinus HOM05D005487 ORTHO05D007280 8.4e-167 590.9 404 71.5
Pp3c4_7990 Physcomitrium patens HOM05D005487 ORTHO05D007280 4.9e-159 565.1 452 60.0
SMO137G0224 Selaginella moellendorffii HOM05D005487 ORTHO05D007280 6.5e-159 564.7 450 61.3
Zm00001eb205930 Zea mays HOM05D005487 ORTHO05D007280 1.6e-154 550.1 391 67.0
Mapoly0022s0035 Marchantia polymorpha HOM05D005487 ORTHO05D007280 1.4e-153 547.0 449 57.9
Sc17g0007720 Simmondsia chinensis HOM05D005487 ORTHO05D007280 3.4e-152 542.3 333 75.7
AagrBONN_evm.TU.Sc2ySwM_344.3343 Anthoceros agrestis HOM05D005487 ORTHO05D007280 7.6e-152 541.2 453 57.8
Ah.09g234260 Amaranthus hybridus HOM05D005487 ORTHO05D007280 1.0e-151 540.8 452 61.7
Migut.M01391 Erythranthe guttata HOM05D005487 ORTHO05D007280 1.3e-151 540.4 453 59.8
CSS0007230 Camellia sinensis var. sinensis HOM05D005487 ORTHO05D007280 1.8e-148 530.0 471 58.4
Pp3c13_16620 Physcomitrium patens HOM05D005487 ORTHO05D007280 3.7e-138 495.7 391 60.6
ECA236G3803 Erigeron canadensis HOM05D005487 ORTHO05D007280 2.8e-130 469.5 307 73.0
Haze_26411 Corylus avellana HOM05D005487 ORTHO05D007280 4.8e-130 468.8 454 50.9
RcHm_v2.0_Chr3g0477951 Rosa chinensis HOM05D005487 ORTHO05D007280 6.3e-130 468.4 484 53.5
RcHm_v2.0_Chr3g0484131 Rosa chinensis HOM05D005487 ORTHO05D007280 8.8e-124 448.0 499 51.3
CBR_g46703 Chara braunii HOM05D005487 ORTHO05D007280 2.7e-120 436.4 504 46.6
Cre17.g732802 Chlamydomonas reinhardtii HOM05D005487 ORTHO05D007280 4.7e-117 425.6 501 44.9
PRCOL_00001448 Prasinoderma coloniale HOM05D005487 ORTHO05D007280 7.0e-105 385.2 455 46.6
Gorai.001G209700 Gossypium raimondii HOM05D005487 ORTHO05D007280 2.2e-50 204.1 115 79.1
Gohir.D07G188750 Gossypium hirsutum HOM05D005487 ORTHO05D007280 9.4e-33 145.6 115 60.9
RcHm_v2.0_Chr5g0003621 Rosa chinensis HOM05D005487 ORTHO05D007280 1.0e-31 142.1 104 65.4
C06p15210 Brassica napus HOM05D005487 ORTHO05D042797 9.7e-30 135.6 89 69.7
BolC6t36696H Brassica oleracea HOM05D005487 ORTHO05D042797 9.7e-30 135.6 89 69.7
SEGI_36702 Sequoiadendron giganteum HOM05D005487 ORTHO05D007280 5.3e-28 129.8 97 62.9
Gohir.D13G151750 Gossypium hirsutum HOM05D005487 ORTHO05D007280 2.4e-20 104.4 55 83.6
BolC9t55424H Brassica oleracea HOM05D005487 ORTHO05D027150 1.9e-17 94.7 66 68.2
BcaC08g44100 Brassica carinata HOM05D005487 ORTHO05D027150 5.5e-17 93.2 69 63.8
C09p25260 Brassica napus HOM05D005487 ORTHO05D027150 2.1e-16 91.3 64 68.8
BcaC04g21976 Brassica carinata HOM05D005487 ORTHO05D027150 2.7e-16 90.9 66 65.2
COL.COLO4_27266 Corchorus olitorius HOM05D000025 ORTHO05D000040 4.4e-14 83.6 169 34.9
TAR381G0287 Trochodendron aralioides HOM05D005487 ORTHO05D415274 8.8e-07 59.3 37 64.9
Pp3c6_20080 Physcomitrium patens HOM05D004309 ORTHO05D005588 3.4e-06 57.4 146 29.5


User provided reference genes

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