Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.L00411 Eucalyptus grandis HOM05D003626 ORTHO05D004255 2.6e-164 582.0 301 100.0
Eucgr.E00978 Eucalyptus grandis HOM05D003626 ORTHO05D004255 4.2e-138 495.0 301 88.4
Eucgr.A02765 Eucalyptus grandis HOM05D003626 ORTHO05D004255 3.8e-115 418.7 228 95.6
PGR042G2663 Punica granatum HOM05D003626 ORTHO05D004255 3.2e-114 415.6 300 71.7
Manes.06G149800 Manihot esculenta HOM05D003626 ORTHO05D004255 8.8e-112 407.5 299 69.2
Cpa.g.sc107.76 Carica papaya HOM05D003626 ORTHO05D004255 4.8e-110 401.7 299 68.2
Thecc.03G180000 Theobroma cacao HOM05D003626 ORTHO05D004255 1.5e-108 396.7 304 65.1
Duzib084G0771 Durio zibethinus HOM05D003626 ORTHO05D004255 1.3e-107 393.7 301 68.4
Manes.14G024700 Manihot esculenta HOM05D003626 ORTHO05D004255 2.9e-107 392.5 285 69.1
Prupe.2G297500 Prunus persica HOM05D003626 ORTHO05D004255 6.5e-107 391.3 298 67.1
TWI39G1025 Tripterygium wilfordii HOM05D003626 ORTHO05D004255 8.5e-107 391.0 285 69.8
TWI23G0117 Tripterygium wilfordii HOM05D003626 ORTHO05D004255 3.2e-106 389.0 285 68.8
Gorai.004G117900 Gossypium raimondii HOM05D003626 ORTHO05D004255 3.6e-105 385.6 300 64.7
arahy.Tifrunner.gnm1.ann1.DJI5YQ Arachis hypogaea HOM05D003626 ORTHO05D004255 6.1e-105 384.8 304 62.8
Gohir.D08G110300 Gossypium hirsutum HOM05D003626 ORTHO05D004255 6.1e-105 384.8 287 67.2
MD07G1273500 Malus domestica HOM05D003626 ORTHO05D004255 3.0e-104 382.5 299 66.9
Gohir.A08G098700 Gossypium hirsutum HOM05D003626 ORTHO05D004255 1.1e-103 380.6 287 66.9
arahy.Tifrunner.gnm1.ann1.TX8CZR Arachis hypogaea HOM05D003626 ORTHO05D004255 1.5e-103 380.2 304 61.8
Duzib068G0520 Durio zibethinus HOM05D003626 ORTHO05D004255 2.6e-103 379.4 281 66.9
Gohir.A12G256000 Gossypium hirsutum HOM05D003626 ORTHO05D004255 3.3e-103 379.0 285 66.3
Duzib205G1576 Durio zibethinus HOM05D003626 ORTHO05D004255 5.7e-103 378.3 287 67.9
Aqoxy7G00296 Aquilegia oxysepala HOM05D003626 ORTHO05D004255 2.2e-102 376.3 307 64.5
Gorai.008G275600 Gossypium raimondii HOM05D003626 ORTHO05D004255 2.2e-102 376.3 283 66.8
Glyma.10G233400 Glycine max HOM05D003626 ORTHO05D004255 3.7e-102 375.6 304 62.5
GSVIVG01028908001 Vitis vinifera HOM05D003626 ORTHO05D004255 3.7e-102 375.6 300 65.0
Phvul.007G072400 Phaseolus vulgaris HOM05D003626 ORTHO05D004255 1.2e-100 370.5 294 64.6
Rhsim03G0188200 Rhododendron simsii HOM05D003626 ORTHO05D004255 2.6e-100 369.4 301 63.5
VMungo0720G1546 Vigna mungo HOM05D003626 ORTHO05D004255 4.5e-100 368.6 299 63.9
Lj1C1001T6 Lonicera japonica HOM05D003626 ORTHO05D004255 5.9e-100 368.2 300 63.0
RcHm_v2.0_Chr1g0377821 Rosa chinensis HOM05D003626 ORTHO05D004255 7.7e-100 367.9 306 63.1
Gohir.D12G257400 Gossypium hirsutum HOM05D003626 ORTHO05D004255 8.5e-99 364.4 269 67.7
CsaV3_3G017260 Cucumis sativus L. HOM05D003626 ORTHO05D004255 1.1e-98 364.0 285 66.3
Dinv28414 Davidia involucrata HOM05D003626 ORTHO05D004255 1.9e-98 363.2 300 64.3
Actinidia25889 Actinidia chinensis HOM05D003626 ORTHO05D000962 7.2e-98 361.3 300 64.3
Atru.chr1.420 Acer truncatum HOM05D003626 ORTHO05D004255 9.4e-98 360.9 272 66.5
FvH4_7g29860 Fragaria vesca HOM05D003626 ORTHO05D004255 9.4e-98 360.9 285 65.3
Sed0000543 Sechium edule HOM05D003626 ORTHO05D004255 1.2e-97 360.5 285 66.0
MELO3C006924.2 Cucumis melo HOM05D003626 ORTHO05D004255 1.6e-97 360.1 285 65.6
Lalb_Chr03g0034731 Lupinus albus HOM05D003626 ORTHO05D004255 8.0e-97 357.8 307 61.2
Glyma.20G161000 Glycine max HOM05D003626 ORTHO05D004255 1.4e-96 357.1 301 61.5
vmacro06655 Vaccinium macrocarpon HOM05D003626 ORTHO05D004255 2.3e-96 356.3 299 61.2
FAN03G0953 Fragaria x ananassa HOM05D003626 ORTHO05D004255 8.8e-96 354.4 306 63.7
Nn6g33408 Nelumbo nucifera HOM05D003626 ORTHO05D004255 2.6e-95 352.8 267 66.7
MD01G1205100 Malus domestica HOM05D003626 ORTHO05D004255 4.4e-95 352.1 299 62.2
Potri.015G146300 Populus trichocarpa HOM05D003626 ORTHO05D004255 4.4e-95 352.1 288 63.2
Potri.012G143200 Populus trichocarpa HOM05D003626 ORTHO05D004255 7.4e-95 351.3 296 61.8
TPR.G26995 Trifolium pratense HOM05D003626 ORTHO05D004255 4.8e-94 348.6 286 63.3
Ciclev10006582m.g Citrus clementina HOM05D003626 ORTHO05D004255 6.3e-94 348.2 285 63.5
TAR629G0048 Trochodendron aralioides HOM05D003626 ORTHO05D004255 6.3e-94 348.2 307 61.6
Psat6g197120 Pisum sativum HOM05D003626 ORTHO05D004255 1.4e-93 347.1 305 60.0
arahy.Tifrunner.gnm1.ann1.26FV7C Arachis hypogaea HOM05D003626 ORTHO05D004255 4.1e-93 345.5 289 60.6
arahy.Tifrunner.gnm1.ann1.7Y9ZSE Arachis hypogaea HOM05D003626 ORTHO05D004255 4.1e-93 345.5 289 60.6
EL10Ac3g05599 Beta vulgaris HOM05D003626 ORTHO05D004255 4.1e-93 345.5 287 63.1
Cfa016262 Carpinus fangiana HOM05D003626 ORTHO05D004255 2.6e-92 342.8 298 60.7
Lsat_1_v5_gn_9_55160 Lactuca sativa HOM05D003626 ORTHO05D004255 4.5e-92 342.0 304 61.2
Glyma.16G181700 Glycine max HOM05D003626 ORTHO05D004255 7.7e-92 341.3 289 61.6
Sabra15G0155500 Salix brachista HOM05D003626 ORTHO05D004255 7.7e-92 341.3 292 60.3
DCAR_020260 Daucus carota HOM05D003626 ORTHO05D004255 1.3e-91 340.5 304 58.9
Medtr1g100810 Medicago truncatula HOM05D003626 ORTHO05D004255 1.7e-91 340.1 307 59.3
Lalb_Chr19g0130741 Lupinus albus HOM05D003626 ORTHO05D004255 5.5e-90 335.1 300 57.3
COL.COLO4_28044 Corchorus olitorius HOM05D003626 ORTHO05D004255 7.2e-90 334.7 296 61.5
PSO478G3353 Papaver somniferum HOM05D003626 ORTHO05D004255 9.4e-90 334.3 300 58.3
Hma1.2p1_0227F.1_g095920 Hydrangea macrophylla HOM05D003626 ORTHO05D004255 1.2e-89 334.0 302 57.9
Lalb_Chr02g0141141 Lupinus albus HOM05D003626 ORTHO05D004255 3.6e-89 332.4 271 61.6
HanXRQChr14g0462361 Helianthus annuus HOM05D003626 ORTHO05D004255 8.0e-89 331.3 304 55.6
CANSAT21G2257 Cannabis sativa HOM05D003626 ORTHO05D004255 1.4e-88 330.5 306 58.5
CiPaw.05G264100 Carya illinoinensis HOM05D003626 ORTHO05D004255 1.8e-88 330.1 308 58.4
FAN10G0313 Fragaria x ananassa HOM05D003626 ORTHO05D004255 4.0e-88 328.9 285 61.8
FAN10G2476 Fragaria x ananassa HOM05D003626 ORTHO05D004255 4.0e-88 328.9 285 61.8
Ah.07g206910 Amaranthus hybridus HOM05D003626 ORTHO05D004255 2.6e-87 326.2 295 60.0
PSO782G4415 Papaver somniferum HOM05D003626 ORTHO05D004255 3.3e-87 325.9 301 57.8
Phvul.004G113400 Phaseolus vulgaris HOM05D003626 ORTHO05D004255 2.2e-86 323.2 282 58.5
Lj2g0008392 Lotus japonicus HOM05D003626 ORTHO05D004255 8.2e-86 321.2 296 57.4
Lj5g0006318 Lotus japonicus HOM05D003626 ORTHO05D004255 7.7e-84 314.7 296 55.1
PGR142G2556 Punica granatum HOM05D003626 ORTHO05D004255 7.7e-84 314.7 304 55.3
Nitab4.5_0000080g0130 Nicotiana tabacum HOM05D003626 ORTHO05D004255 1.0e-83 314.3 295 53.9
FAN01G0376 Fragaria x ananassa HOM05D003626 ORTHO05D004255 1.7e-83 313.5 293 58.7
FAN03G3125 Fragaria x ananassa HOM05D003626 ORTHO05D004255 1.7e-83 313.5 285 60.0
FAN06G2167 Fragaria x ananassa HOM05D003626 ORTHO05D004255 3.8e-83 312.4 285 60.0
Nitab4.5_0001951g0040 Nicotiana tabacum HOM05D003626 ORTHO05D004255 6.5e-83 311.6 295 53.2
AUR62021157 Chenopodium quinoa HOM05D003626 ORTHO05D004255 8.5e-83 311.2 266 58.6
Ca_10741_v3 Cicer arietinum L. HOM05D003626 ORTHO05D004255 1.1e-82 310.8 305 55.1
TWI14G0197 Tripterygium wilfordii HOM05D003626 ORTHO05D004255 1.9e-82 310.1 210 73.3
TPR.G8172 Trifolium pratense HOM05D003626 ORTHO05D004255 3.2e-82 309.3 311 53.7
ClCG05G008170 Citrullus lanatus HOM05D003626 ORTHO05D004255 7.2e-82 308.1 286 59.1
ATR0680G428 Amborella trichopoda HOM05D003626 ORTHO05D004255 9.4e-82 307.8 383 46.5
Psat0s4127g0040 Pisum sativum HOM05D003626 ORTHO05D004255 1.6e-81 307.0 290 56.2
DCAR_029574 Daucus carota HOM05D003626 ORTHO05D004255 2.1e-81 306.6 266 60.9
Nn1g01542 Nelumbo nucifera HOM05D003626 ORTHO05D004255 3.6e-81 305.8 367 49.3
Cc02_g02700 Coffea canephora HOM05D003626 ORTHO05D004255 6.1e-81 305.1 300 54.0
Lalb_Chr06g0161221 Lupinus albus HOM05D003626 ORTHO05D004255 5.2e-80 302.0 306 51.3
Oeu004107.1 Olea europaea HOM05D003626 ORTHO05D004255 6.8e-80 301.6 332 50.9
SalBow4G0890 Salvia bowleyana HOM05D003626 ORTHO05D004255 1.2e-79 300.8 265 57.7
MSTRG.27103 Avicennia marina HOM05D003626 ORTHO05D004255 2.6e-79 299.7 265 57.0
BraA03t14686Z Brassica rapa HOM05D003626 ORTHO05D004255 2.6e-79 299.7 263 60.1
C07p54460 Brassica napus HOM05D003626 ORTHO05D004255 5.7e-79 298.5 279 58.1
A03p56130 Brassica napus HOM05D003626 ORTHO05D004255 9.8e-79 297.7 280 59.6
THA.LOC104811971 Tarenaya hassleriana HOM05D003626 ORTHO05D004255 1.3e-78 297.4 264 57.2
TAR375G0013 Trochodendron aralioides HOM05D003626 ORTHO05D004255 1.3e-78 297.4 230 67.8
Oeu061653.1 Olea europaea HOM05D003626 ORTHO05D004255 1.7e-78 297.0 299 53.2
TAR636G1367 Trochodendron aralioides HOM05D003626 ORTHO05D004255 2.8e-78 296.2 237 62.9
Aa31LG3G8800 Aethionema arabicum HOM05D003626 ORTHO05D004255 1.4e-77 293.9 247 59.9
Sp7g23640 Schrenkiella parvula HOM05D003626 ORTHO05D004255 1.8e-77 293.5 264 58.0
BolC7t45931H Brassica oleracea HOM05D003626 ORTHO05D004255 2.4e-77 293.1 277 57.4
Hund04768 Selenicereus undatus HOM05D003626 ORTHO05D004255 2.4e-77 293.1 287 55.7
AUR62015951 Chenopodium quinoa HOM05D003626 ORTHO05D004255 7.0e-77 291.6 363 47.1
Carub.0007s1537 Capsella rubella HOM05D003626 ORTHO05D004255 1.2e-76 290.8 250 58.4
ECA238G3668 Erigeron canadensis HOM05D003626 ORTHO05D004255 2.7e-76 289.7 265 54.3
PGSC0003DMG400015791 Solanum tuberosum HOM05D003626 ORTHO05D004255 2.7e-76 289.7 299 52.8
BcaC06g32796 Brassica carinata HOM05D003626 ORTHO05D004255 3.5e-76 289.3 257 58.8
CAN.G1175.16 Capsicum annuum HOM05D003626 ORTHO05D004255 3.5e-76 289.3 298 52.0
Thhalv10024755m.g Eutrema salsugineum HOM05D003626 ORTHO05D004255 3.5e-76 289.3 247 59.1
SGA_v2.0_scaffold60G21078 Striga asiatica HOM05D003626 ORTHO05D004255 4.5e-76 288.9 267 55.8
Nitab4.5_0004439g0040 Nicotiana tabacum HOM05D003626 ORTHO05D004255 7.7e-76 288.1 299 50.2
Sabra12G0107600 Salix brachista HOM05D003626 ORTHO05D004255 1.0e-75 287.7 310 53.2
THA.LOC104825103 Tarenaya hassleriana HOM05D003626 ORTHO05D004255 1.3e-75 287.3 264 56.1
Migut.F01102 Erythranthe guttata HOM05D003626 ORTHO05D004255 5.0e-75 285.4 266 56.0
AL7G27480 Arabidopsis lyrata HOM05D003626 ORTHO05D004255 1.9e-74 283.5 247 58.3
Solyc03g025440.3 Solanum lycopersicum HOM05D003626 ORTHO05D004255 1.9e-74 283.5 300 52.3
Sopen03g004280 Solanum pennellii HOM05D003626 ORTHO05D004255 1.9e-74 283.5 300 52.3
Medtr6g053660 Medicago truncatula HOM05D003626 ORTHO05D004255 2.5e-74 283.1 278 52.9
AT4G25610 Arabidopsis thaliana HOM05D003626 ORTHO05D004255 3.3e-74 282.7 247 57.5
CDE06G1616 Ceratophyllum demersum HOM05D003626 ORTHO05D004255 7.2e-74 281.6 289 50.5
Dinv35227 Davidia involucrata HOM05D003626 ORTHO05D004255 9.5e-74 281.2 225 65.8
MSTRG.82 Avicennia marina HOM05D003626 ORTHO05D004255 2.8e-73 279.6 266 53.0
Haze_00014 Corylus avellana HOM05D003626 ORTHO05D004255 2.3e-72 276.6 354 47.5
Peaxi162Scf00444g00425 Petunia axillaris HOM05D003626 ORTHO05D004255 3.0e-72 276.2 299 49.8
CARHR233030 Cardamine hirsuta HOM05D003626 ORTHO05D004255 8.9e-72 274.6 247 57.1
C01p21150 Brassica napus HOM05D003626 ORTHO05D004255 9.8e-71 271.2 261 55.2
VMungo0464G2114 Vigna mungo HOM05D003626 ORTHO05D002946 8.3e-70 268.1 289 52.2
Solyc06g036060.4 Solanum lycopersicum HOM05D003626 ORTHO05D004255 1.2e-68 264.2 301 47.5
Sopen06g011810 Solanum pennellii HOM05D003626 ORTHO05D004255 1.6e-68 263.8 301 47.8
A01p16870 Brassica napus HOM05D003626 ORTHO05D004255 5.9e-68 261.9 261 54.0
ECA233G2749 Erigeron canadensis HOM05D003626 ORTHO05D004255 5.9e-68 261.9 225 59.6
Sed0014313 Sechium edule HOM05D003626 ORTHO05D004255 1.7e-67 260.4 291 51.5
Nitab4.5_0000084g0130 Nicotiana tabacum HOM05D003626 ORTHO05D004255 8.6e-67 258.1 299 48.5
BcaC09g50754 Brassica carinata HOM05D003626 ORTHO05D004255 1.1e-66 257.7 263 52.5
HPP92_001476 Vanilla planifolia HOM05D003626 ORTHO05D004255 1.1e-66 257.7 393 40.2
BcaNung03703 Brassica carinata HOM05D003626 ORTHO05D004255 4.7e-65 252.3 247 53.0
SEGI_20458 Sequoiadendron giganteum HOM05D003626 ORTHO05D004255 5.2e-64 248.8 215 60.0
Sc19g0001390 Simmondsia chinensis HOM05D003626 ORTHO05D004255 1.4e-61 240.7 252 52.4
Peaxi162Scf00848g00116 Petunia axillaris HOM05D003626 ORTHO05D004255 7.0e-61 238.4 254 50.0
Os09g0570200 Oryza sativa ssp. japonica HOM05D003626 ORTHO05D004255 6.0e-60 235.3 240 51.2
unitig_0.g459 Utricularia gibba HOM05D003626 ORTHO05D004255 5.0e-59 232.3 270 49.3
Zm00001eb095880 Zea mays HOM05D003626 ORTHO05D004255 5.0e-59 232.3 244 49.2
unitig_22.g5223 Utricularia gibba HOM05D003626 ORTHO05D004255 4.3e-58 229.2 273 46.9
Migut.F00325 Erythranthe guttata HOM05D003626 ORTHO05D004255 5.6e-58 228.8 265 49.1
Mapoly0003s0245 Marchantia polymorpha HOM05D003626 ORTHO05D004255 2.1e-57 226.9 225 51.6
SMO347G0135 Selaginella moellendorffii HOM05D003626 ORTHO05D004255 7.5e-55 218.4 222 50.5
Sc13g0008850 Simmondsia chinensis HOM05D003626 ORTHO05D004255 4.1e-53 212.6 294 41.8
CDE02G1538 Ceratophyllum demersum HOM05D003626 ORTHO05D004255 6.8e-48 195.3 291 42.6
FAN06G1666 Fragaria x ananassa HOM05D003626 ORTHO05D004255 5.4e-45 185.7 278 43.9
CSS0037833 Camellia sinensis var. sinensis HOM05D003626 ORTHO05D004255 3.6e-41 172.9 142 64.1
CSS0041965 Camellia sinensis var. sinensis HOM05D003626 ORTHO05D004255 1.2e-36 157.9 140 60.7
Pp3c10_4090 Physcomitrium patens HOM05D003626 ORTHO05D004255 2.1e-36 157.1 200 44.0
HPP92_011473 Vanilla planifolia HOM05D003626 ORTHO05D004255 2.7e-36 156.8 216 47.2
Zm00001eb224460 Zea mays HOM05D003626 ORTHO05D004255 2.9e-30 136.7 149 50.3
SMO356G0700 Selaginella moellendorffii HOM05D003626 ORTHO05D004255 9.3e-29 131.7 207 41.1
SEGI_33334 Sequoiadendron giganteum HOM05D003626 ORTHO05D004255 1.2e-28 131.3 112 58.0
AagrBONN_evm.TU.Sc2ySwM_344.1743 Anthoceros agrestis HOM05D003626 ORTHO05D004255 3.9e-27 126.3 226 36.3
SEGI_03018 Sequoiadendron giganteum HOM05D003626 ORTHO05D004255 2.4e-24 117.1 95 65.3
Glyma.09G136202 Glycine max HOM05D003626 ORTHO05D004255 4.9e-22 109.4 84 69.0
Lalb_Chr21g0305131 Lupinus albus HOM05D003626 ORTHO05D004255 7.6e-15 85.5 83 60.2
Pp3c10_4110 Physcomitrium patens HOM05D003626 ORTHO05D004255 8.4e-14 82.0 99 47.5
ECA233G5443 Erigeron canadensis HOM05D003626 ORTHO05D004255 3.9e-11 73.2 72 50.0
TAR375G0355 Trochodendron aralioides HOM05D003626 ORTHO05D004255 5.3e-08 62.8 68 55.9
Ca_13872_v3 Cicer arietinum L. HOM05D003626 ORTHO05D004255 6.9e-08 62.4 42 83.3
HPP92_001477 Vanilla planifolia HOM05D003626 ORTHO05D004255 5.8e-07 59.3 50 52.0
HPP92_001484 Vanilla planifolia HOM05D003626 ORTHO05D004255 1.7e-06 57.8 59 44.1
HPP92_027487 Vanilla planifolia HOM05D003626 ORTHO05D004255 3.8e-06 56.6 48 66.7


User provided reference genes

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