Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.L00346 Eucalyptus grandis HOM05D013249 ORTHO05D011012 0.0e+00 1566.6 788 100.0
QL02p027097 Quercus lobata HOM05D013249 ORTHO05D011012 8.9e-47 193.0 874 27.8
Potri.001G452300 Populus trichocarpa HOM05D011672 ORTHO05D011012 1.7e-34 152.1 888 25.9
PGR031G2170 Punica granatum HOM05D013249 ORTHO05D011012 1.1e-33 149.4 435 28.3
Haze_09217 Corylus avellana HOM05D013249 ORTHO05D011012 1.7e-29 135.6 930 25.5
Sabra16G0305400 Salix brachista HOM05D011672 ORTHO05D011012 9.2e-28 129.8 832 26.2
Duzib068G0278 Durio zibethinus HOM05D011672 ORTHO05D011012 3.5e-27 127.9 844 23.9
Potri.011G149601 Populus trichocarpa HOM05D011672 ORTHO05D011012 2.8e-24 118.2 449 28.1
Prupe.5G135100 Prunus persica HOM05D013249 ORTHO05D011012 2.0e-22 112.1 838 24.1
Thecc.03G215600 Theobroma cacao HOM05D011672 ORTHO05D011012 1.7e-21 109.0 876 23.9
Sabra11G0134500 Salix brachista HOM05D011672 ORTHO05D011012 6.4e-21 107.1 370 27.8
CiPaw.12G074500 Carya illinoinensis HOM05D011672 ORTHO05D011012 2.3e-18 98.6 313 31.9
RcHm_v2.0_Chr7g0187831 Rosa chinensis HOM05D013249 ORTHO05D011012 8.6e-18 96.7 679 22.2
FAN13G1375 Fragaria x ananassa HOM05D013249 ORTHO05D011012 2.1e-16 92.0 711 23.1
TAR374G0213 Trochodendron aralioides HOM05D006657 ORTHO05D005964 4.0e-15 87.8 911 22.9
FvH4_5g10390 Fragaria vesca HOM05D013249 ORTHO05D011012 3.4e-14 84.7 699 22.6
FAN08G0662 Fragaria x ananassa HOM05D013249 ORTHO05D011012 5.8e-14 84.0 693 22.7
GSVIVG01038660001 Vitis vinifera HOM05D006657 ORTHO05D005964 7.6e-14 83.6 812 21.7
Gohir.D12G243700 Gossypium hirsutum HOM05D011672 ORTHO05D011012 1.3e-13 82.8 418 25.6
MD06G1124500 Malus domestica HOM05D013249 ORTHO05D011012 1.3e-13 82.8 415 24.8
FAN04G0229 Fragaria x ananassa HOM05D013249 ORTHO05D011012 4.9e-13 80.9 165 31.5
Gohir.A12G242700 Gossypium hirsutum HOM05D011672 ORTHO05D011012 4.9e-13 80.9 398 25.6
TAR375G0071 Trochodendron aralioides HOM05D006657 ORTHO05D005964 1.4e-12 79.3 747 23.0
FAN18G3072 Fragaria x ananassa HOM05D013249 ORTHO05D011012 7.1e-12 77.0 673 22.3
Gorai.008G261200 Gossypium raimondii HOM05D011672 ORTHO05D011012 9.3e-12 76.6 418 25.4
Duzib084G0474 Durio zibethinus HOM05D011672 ORTHO05D011012 1.0e-10 73.2 320 25.6
Dinv29204 Davidia involucrata HOM05D006657 ORTHO05D005964 3.3e-09 68.2 436 25.2
Nn1g05264 Nelumbo nucifera HOM05D006657 ORTHO05D005964 7.3e-09 67.0 432 24.5
CANSAT21G0900 Cannabis sativa HOM05D006657 ORTHO05D005964 1.3e-08 66.2 587 22.5
COL.COLO4_10845 Corchorus olitorius HOM05D011672 ORTHO05D011012 2.1e-08 65.5 346 25.1
CSS0010102 Camellia sinensis var. sinensis HOM05D006657 ORTHO05D005964 1.4e-07 62.8 423 24.6
Actinidia08706 Actinidia chinensis HOM05D006657 ORTHO05D005964 2.4e-07 62.0 427 23.0
TWI81G0792 Tripterygium wilfordii HOM05D011672 ORTHO05D011012 2.4e-07 62.0 327 23.5
Peaxi162Scf00912g00114 Petunia axillaris HOM05D006657 ORTHO05D005964 3.1e-07 61.6 188 26.6
Glyma.04G227100 Glycine max HOM05D006657 ORTHO05D005964 4.0e-07 61.2 397 22.9
TAR629G2606 Trochodendron aralioides HOM05D006657 ORTHO05D005964 4.0e-07 61.2 652 23.2
vmacro06453 Vaccinium macrocarpon HOM05D006657 ORTHO05D005964 4.0e-07 61.2 200 27.5
Psat1g195680 Pisum sativum HOM05D013241 ORTHO05D011012 5.3e-07 60.8 366 24.6
Ciclev10018632m.g Citrus clementina HOM05D006657 ORTHO05D005964 9.0e-07 60.1 711 21.7
Aa31LG11G3790 Aethionema arabicum HOM05D009821 ORTHO05D005964 1.2e-06 59.7 170 28.2
Actinidia34275 Actinidia chinensis HOM05D006657 ORTHO05D005964 1.5e-06 59.3 432 22.7
vmacro10166 Vaccinium macrocarpon HOM05D006657 ORTHO05D005964 1.5e-06 59.3 411 22.9
Cpa.g.sc37.109 Carica papaya HOM05D011672 ORTHO05D012736 2.0e-06 58.9 268 25.0
Eucgr.K00044 Eucalyptus grandis HOM05D006657 ORTHO05D005964 2.6e-06 58.5 191 29.8
FAN10G1617 Fragaria x ananassa HOM05D006657 ORTHO05D005964 2.6e-06 58.5 440 24.1
arahy.Tifrunner.gnm1.ann1.UMZ78C Arachis hypogaea HOM05D006657 ORTHO05D005964 4.5e-06 57.8 202 27.7
arahy.Tifrunner.gnm1.ann1.UB23H3 Arachis hypogaea HOM05D006657 ORTHO05D005964 5.8e-06 57.4 249 25.7
C08p24510 Brassica napus HOM05D009821 ORTHO05D005964 7.6e-06 57.0 167 28.1
BolC8t50069H Brassica oleracea HOM05D009821 ORTHO05D005964 7.6e-06 57.0 167 28.1
CARHR158490 Cardamine hirsuta HOM05D009821 ORTHO05D005964 7.6e-06 57.0 167 29.3
FAN10G2847 Fragaria x ananassa HOM05D006657 ORTHO05D005964 7.6e-06 57.0 442 23.5
Solyc03g080140.3 Solanum lycopersicum HOM05D006657 ORTHO05D005964 7.6e-06 57.0 200 25.5
BcaC07g39413 Brassica carinata HOM05D009821 ORTHO05D005964 9.9e-06 56.6 167 28.1
A01p24720 Brassica napus HOM05D009821 ORTHO05D005964 9.9e-06 56.6 166 27.7
BraA01t02384Z Brassica rapa HOM05D009821 ORTHO05D005964 9.9e-06 56.6 166 27.7
FvH4_7g33030 Fragaria vesca HOM05D006657 ORTHO05D005964 9.9e-06 56.6 435 22.1


User provided reference genes

Program Settings