Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.L00211 Eucalyptus grandis HOM05D000142 ORTHO05D000124 9.8e-36 152.9 76 100.0
Eucgr.G00757 Eucalyptus grandis HOM05D000142 ORTHO05D000124 7.8e-25 116.7 62 93.5
Eucgr.L00175 Eucalyptus grandis HOM05D000142 ORTHO05D000124 4.6e-17 90.9 62 80.6
Eucgr.L00316 Eucalyptus grandis HOM05D000142 ORTHO05D000124 4.6e-17 90.9 62 80.6
Eucgr.L00478 Eucalyptus grandis HOM05D000142 ORTHO05D000124 1.7e-16 89.0 62 79.0
Eucgr.G00661 Eucalyptus grandis HOM05D000142 ORTHO05D000124 2.9e-11 71.6 42 85.7
C07p35460 Brassica napus HOM05D000142 ORTHO05D000124 1.0e-08 63.2 67 58.2
Gohir.D13G092200 Gossypium hirsutum HOM05D000142 ORTHO05D000124 1.0e-08 63.2 69 55.1
Gohir.A13G087800 Gossypium hirsutum HOM05D000142 ORTHO05D000124 5.1e-08 60.8 43 74.4
ECA240G0047 Erigeron canadensis HOM05D000142 ORTHO05D000124 8.7e-08 60.1 42 73.8
ClCG09G014940 Citrullus lanatus HOM05D000142 ORTHO05D000124 1.1e-07 59.7 42 73.8
TPR.G19739 Trifolium pratense HOM05D000142 ORTHO05D000124 1.1e-07 59.7 65 53.8
Zm00001eb063770 Zea mays HOM05D000142 ORTHO05D000124 1.1e-07 59.7 60 55.0
TAR628G0271 Trochodendron aralioides HOM05D000142 ORTHO05D000124 1.5e-07 59.3 42 71.4
Thhalv10004793m.g Eutrema salsugineum HOM05D000142 ORTHO05D000124 1.9e-07 58.9 69 56.5
Gohir.A12G177700 Gossypium hirsutum HOM05D000142 ORTHO05D000124 1.9e-07 58.9 43 72.1
Gohir.D12G180101 Gossypium hirsutum HOM05D000142 ORTHO05D000124 1.9e-07 58.9 43 72.1
Gorai.008G193200 Gossypium raimondii HOM05D000142 ORTHO05D000124 1.9e-07 58.9 43 72.1
Dinv41105 Davidia involucrata HOM05D000142 ORTHO05D000124 2.5e-07 58.5 42 71.4
FAN05G0668 Fragaria x ananassa HOM05D000142 ORTHO05D000124 3.3e-07 58.2 47 66.0
Gohir.A07G066300 Gossypium hirsutum HOM05D000142 ORTHO05D000124 4.3e-07 57.8 43 69.8
Gohir.D07G070800 Gossypium hirsutum HOM05D000142 ORTHO05D000124 4.3e-07 57.8 43 69.8
Gorai.001G074700 Gossypium raimondii HOM05D000142 ORTHO05D000124 4.3e-07 57.8 43 69.8
PSO017G5645 Papaver somniferum HOM05D000142 ORTHO05D000124 5.6e-07 57.4 62 54.8
PSO063G0258 Papaver somniferum HOM05D000142 ORTHO05D000124 5.6e-07 57.4 62 54.8
Prupe.6G329800 Prunus persica HOM05D000142 ORTHO05D000124 5.6e-07 57.4 42 71.4
C02p53080 Brassica napus HOM05D000142 ORTHO05D000124 7.3e-07 57.0 41 73.2
MELO3C018668.2 Cucumis melo HOM05D000142 ORTHO05D000124 7.3e-07 57.0 68 54.4
Oeu000227.1 Olea europaea HOM05D000142 ORTHO05D000124 7.3e-07 57.0 42 71.4
Os03g0836200 Oryza sativa ssp. japonica HOM05D000142 ORTHO05D000124 7.3e-07 57.0 44 61.4
FAN09G2280 Fragaria x ananassa HOM05D000142 ORTHO05D000124 9.6e-07 56.6 45 66.7
CiPaw.06G150700 Carya illinoinensis HOM05D000142 ORTHO05D000124 1.2e-06 56.2 43 67.4
Dinv19329 Davidia involucrata HOM05D000142 ORTHO05D000124 1.2e-06 56.2 42 69.0
Thecc.03G088100 Theobroma cacao HOM05D000142 ORTHO05D000124 1.2e-06 56.2 67 52.2
FvH4_6g05361 Fragaria vesca HOM05D000142 ORTHO05D000124 1.6e-06 55.8 42 69.0
FAN02G0893 Fragaria x ananassa HOM05D000142 ORTHO05D000124 1.6e-06 55.8 42 69.0
FAN05G0947 Fragaria x ananassa HOM05D000142 ORTHO05D000124 1.6e-06 55.8 42 69.0
FAN14G2074 Fragaria x ananassa HOM05D000142 ORTHO05D000124 1.6e-06 55.8 42 69.0
FAN14G3147 Fragaria x ananassa HOM05D000142 ORTHO05D000124 1.6e-06 55.8 42 69.0
COL.COLO4_07595 Corchorus olitorius HOM05D000142 ORTHO05D000124 2.1e-06 55.5 71 49.3
Duzib205G0726 Durio zibethinus HOM05D000142 ORTHO05D000124 2.1e-06 55.5 43 65.1
Lj4g0010229 Lotus japonicus HOM05D000142 ORTHO05D000124 2.8e-06 55.1 36 72.2
PGR042G2249 Punica granatum HOM05D000142 ORTHO05D000124 2.8e-06 55.1 62 54.8
TWI59G1398 Tripterygium wilfordii HOM05D000142 ORTHO05D000124 2.8e-06 55.1 40 72.5
Manes.11G107800 Manihot esculenta HOM05D000142 ORTHO05D000124 3.6e-06 54.7 57 59.6
TWI14G1323 Tripterygium wilfordii HOM05D000142 ORTHO05D000124 3.6e-06 54.7 40 70.0
Cpa.g.sc2.51 Carica papaya HOM05D000142 ORTHO05D000124 4.7e-06 54.3 42 66.7
CANSAT54G3042 Cannabis sativa HOM05D000142 ORTHO05D000124 6.2e-06 53.9 72 50.0
Haze_10793 Corylus avellana HOM05D000142 ORTHO05D000124 6.2e-06 53.9 67 50.7
AT3G26420 Arabidopsis thaliana HOM05D000142 ORTHO05D000124 8.1e-06 53.5 67 53.7
MSTRG.16557 Avicennia marina HOM05D000142 ORTHO05D000124 8.1e-06 53.5 39 71.8
CDE04G2537 Ceratophyllum demersum HOM05D000142 ORTHO05D000124 8.1e-06 53.5 52 53.8
Hma1.2p1_0107F.1_g051630 Hydrangea macrophylla HOM05D000142 ORTHO05D000124 8.1e-06 53.5 39 69.2
Potri.001G207100 Populus trichocarpa HOM05D000142 ORTHO05D000124 8.1e-06 53.5 42 66.7


User provided reference genes

Program Settings