Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.G00666 Eucalyptus grandis HOM05D029851 ORTHO05D029320 6.6e-91 337.4 179 100.0
Eucgr.L00174 Eucalyptus grandis HOM05D029851 ORTHO05D029320 6.6e-91 337.4 179 100.0
Eucgr.G00769 Eucalyptus grandis HOM05D000343 ORTHO05D002777 3.7e-41 172.2 150 76.0
Eucgr.L00180 Eucalyptus grandis HOM05D029851 ORTHO05D029320 2.6e-34 149.4 74 95.9
Eucgr.G00756 Eucalyptus grandis HOM05D029851 ORTHO05D029320 1.7e-30 136.7 79 86.1
PGR042G3206 Punica granatum HOM05D000343 ORTHO05D002777 9.1e-16 87.8 159 49.1
Eucgr.G00674 Eucalyptus grandis HOM05D000343 ORTHO05D009884 1.1e-13 80.9 49 81.6
GSVIVG01038744001 Vitis vinifera HOM05D000343 ORTHO05D009884 2.3e-11 73.2 131 51.9
TWI59G0918 Tripterygium wilfordii HOM05D000343 ORTHO05D002777 3.0e-11 72.8 149 47.7
Sabra03G0015100 Salix brachista HOM05D000343 ORTHO05D009884 5.2e-11 72.0 146 49.3
Prupe.8G060400 Prunus persica HOM05D000343 ORTHO05D002777 8.8e-11 71.2 148 50.7
HanXRQChr03g0066901 Helianthus annuus HOM05D000343 ORTHO05D002777 1.2e-10 70.9 107 57.0
Nn5g30120 Nelumbo nucifera HOM05D000343 ORTHO05D002777 1.2e-10 70.9 148 46.6
FvH4_2g11930 Fragaria vesca HOM05D000343 ORTHO05D002777 2.0e-10 70.1 147 46.3
FAN20G2112 Fragaria x ananassa HOM05D000343 ORTHO05D002777 2.0e-10 70.1 147 46.9
FAN24G2206 Fragaria x ananassa HOM05D000343 ORTHO05D002777 2.0e-10 70.1 147 46.3
FAN15G3294 Fragaria x ananassa HOM05D000343 ORTHO05D002777 3.4e-10 69.3 147 47.6
Gorai.005G220100 Gossypium raimondii HOM05D000343 ORTHO05D009884 3.4e-10 69.3 148 42.6
Actinidia23995 Actinidia chinensis HOM05D000343 ORTHO05D002777 4.4e-10 68.9 154 45.5
Thecc.02G138700 Theobroma cacao HOM05D000343 ORTHO05D002777 4.4e-10 68.9 143 45.5
Actinidia00268 Actinidia chinensis HOM05D000343 ORTHO05D002777 5.7e-10 68.6 89 65.2
CSS0014897 Camellia sinensis var. sinensis HOM05D000343 ORTHO05D009884 7.5e-10 68.2 122 53.3
Oeu000247.4 Olea europaea HOM05D000343 ORTHO05D002777 7.5e-10 68.2 87 65.5
TAR628G1020 Trochodendron aralioides HOM05D000343 ORTHO05D002777 1.3e-09 67.4 155 40.6
vmacro01824 Vaccinium macrocarpon HOM05D000343 ORTHO05D002777 1.3e-09 67.4 155 44.5
CSS0044959 Camellia sinensis var. sinensis HOM05D000343 ORTHO05D002777 1.7e-09 67.0 121 50.4
MD05G1044800 Malus domestica HOM05D000343 ORTHO05D009884 1.7e-09 67.0 150 46.7
RcHm_v2.0_Chr6g0271811 Rosa chinensis HOM05D000343 ORTHO05D009884 1.7e-09 67.0 149 47.7
Duzib132G0085 Durio zibethinus HOM05D000343 ORTHO05D002777 2.8e-09 66.2 149 46.3
Gohir.D02G197000 Gossypium hirsutum HOM05D000343 ORTHO05D009884 2.8e-09 66.2 148 40.5
QL11p020880 Quercus lobata HOM05D000343 ORTHO05D009884 2.8e-09 66.2 54 59.3
Sed0012395 Sechium edule HOM05D000343 ORTHO05D002777 2.8e-09 66.2 148 47.3
arahy.Tifrunner.gnm1.ann1.8T0CRQ Arachis hypogaea HOM05D000343 ORTHO05D002777 4.9e-09 65.5 168 45.8
arahy.Tifrunner.gnm1.ann1.KT5IG2 Arachis hypogaea HOM05D000343 ORTHO05D002777 4.9e-09 65.5 168 45.8
Potri.003G024000 Populus trichocarpa HOM05D000343 ORTHO05D002777 4.9e-09 65.5 141 50.4
Rhsim11G0136600 Rhododendron simsii HOM05D000343 ORTHO05D002777 6.3e-09 65.1 48 68.8
MD10G1051800 Malus domestica HOM05D000343 ORTHO05D009884 1.1e-08 64.3 142 47.9
Nn1g05348 Nelumbo nucifera HOM05D000343 ORTHO05D009884 1.1e-08 64.3 148 43.9
Migut.B00610 Erythranthe guttata HOM05D000343 ORTHO05D002777 1.8e-08 63.5 54 59.3
Gohir.A03G173900 Gossypium hirsutum HOM05D000343 ORTHO05D002777 2.4e-08 63.2 151 42.4
Manes.06G012600 Manihot esculenta HOM05D000343 ORTHO05D002777 2.4e-08 63.2 54 57.4
CiPaw.06G153500 Carya illinoinensis HOM05D000343 ORTHO05D002777 3.1e-08 62.8 149 47.7
CANSAT11G1697 Cannabis sativa HOM05D000343 ORTHO05D002777 5.4e-08 62.0 51 60.8
ClCG10G009250 Citrullus lanatus HOM05D000343 ORTHO05D002777 5.4e-08 62.0 135 47.4
COL.COLO4_24941 Corchorus olitorius HOM05D000343 ORTHO05D009884 5.4e-08 62.0 149 45.0
CsaV3_4G009440 Cucumis sativus L. HOM05D000343 ORTHO05D002777 5.4e-08 62.0 154 44.2
Lalb_Chr10g0097841 Lupinus albus HOM05D000343 ORTHO05D002777 5.4e-08 62.0 129 50.4
Cc02_g21540 Coffea canephora HOM05D000343 ORTHO05D009884 7.0e-08 61.6 54 53.7
Medtr4g094232 Medicago truncatula HOM05D000343 ORTHO05D002777 7.0e-08 61.6 150 44.7
PSO541G1663 Papaver somniferum HOM05D000343 ORTHO05D002777 7.0e-08 61.6 155 45.2
PSO781G0273 Papaver somniferum HOM05D000343 ORTHO05D002777 7.0e-08 61.6 150 43.3
Cfa005601 Carpinus fangiana HOM05D000343 ORTHO05D002777 9.1e-08 61.2 142 44.4
Ciclev10030175m.g Citrus clementina HOM05D000343 ORTHO05D009884 1.2e-07 60.8 51 62.7
ECA240G1089 Erigeron canadensis HOM05D000343 ORTHO05D002777 1.2e-07 60.8 84 61.9
Eucgr.L00219 Eucalyptus grandis HOM05D000343 ORTHO05D009884 1.2e-07 60.8 50 62.0
Lsat_1_v5_gn_9_117160 Lactuca sativa HOM05D000343 ORTHO05D002777 1.2e-07 60.8 96 59.4
Phvul.002G208800 Phaseolus vulgaris HOM05D000343 ORTHO05D002777 1.2e-07 60.8 148 43.2
Potri.001G205400 Populus trichocarpa HOM05D000343 ORTHO05D002777 1.2e-07 60.8 54 61.1
DCAR_001785 Daucus carota HOM05D000343 ORTHO05D009884 1.6e-07 60.5 105 54.3
Duzib248G1573 Durio zibethinus HOM05D000343 ORTHO05D009884 1.6e-07 60.5 154 40.9
SalBow5G0636 Salvia bowleyana HOM05D000343 ORTHO05D009884 2.0e-07 60.1 131 47.3
SalBow5G2302 Salvia bowleyana HOM05D000343 ORTHO05D009884 2.0e-07 60.1 131 47.3
MELO3C019011.2 Cucumis melo HOM05D000343 ORTHO05D002777 2.7e-07 59.7 106 54.7
Nitab4.5_0002576g0010 Nicotiana tabacum HOM05D000343 ORTHO05D002777 2.7e-07 59.7 152 44.1
Hund00062 Selenicereus undatus HOM05D000343 ORTHO05D002777 2.7e-07 59.7 87 58.6
Atru.chr6.1136 Acer truncatum HOM05D000343 ORTHO05D002777 3.5e-07 59.3 96 57.3
CiPaw.05G035500 Carya illinoinensis HOM05D000343 ORTHO05D009884 3.5e-07 59.3 92 56.5
Hma1.2p1_0704F.1_g206650 Hydrangea macrophylla HOM05D000343 ORTHO05D002777 3.5e-07 59.3 87 59.8
Hund06383 Selenicereus undatus HOM05D000343 ORTHO05D009884 3.5e-07 59.3 54 50.0
Glyma.08G072400 Glycine max HOM05D000343 ORTHO05D002777 4.5e-07 58.9 88 59.1
THA.LOC104804410 Tarenaya hassleriana HOM05D000343 ORTHO05D002777 4.5e-07 58.9 138 47.1
Psat7g098240 Pisum sativum HOM05D000343 ORTHO05D009884 5.9e-07 58.5 150 45.3
Sopen01g047700 Solanum pennellii HOM05D000343 ORTHO05D009884 5.9e-07 58.5 155 40.6
PGSC0003DMG400012559 Solanum tuberosum HOM05D000343 ORTHO05D009884 5.9e-07 58.5 155 41.9
Eucgr.L00482 Eucalyptus grandis HOM05D000343 ORTHO05D009884 7.7e-07 58.2 140 34.3
SGA_v2.0_scaffold14G07121 Striga asiatica HOM05D000343 ORTHO05D002777 7.7e-07 58.2 105 51.4
Lalb_Chr04g0256521 Lupinus albus HOM05D000343 ORTHO05D009884 1.7e-06 57.0 52 57.7
Oeu007963.1 Olea europaea HOM05D000343 ORTHO05D009884 2.3e-06 56.6 42 64.3
Solyc01g105160.4 Solanum lycopersicum HOM05D000343 ORTHO05D002777 2.3e-06 56.6 155 40.6
Sc22g0003160 Simmondsia chinensis HOM05D000343 ORTHO05D002777 2.9e-06 56.2 49 55.1
VMungo0251G0418 Vigna mungo HOM05D000343 ORTHO05D009884 2.9e-06 56.2 133 43.6
Aqoxy6G00797 Aquilegia oxysepala HOM05D000343 ORTHO05D002777 3.8e-06 55.8 103 54.4
TPR.G10457 Trifolium pratense HOM05D000343 ORTHO05D002777 3.8e-06 55.8 97 53.6
CDE12G0847 Ceratophyllum demersum HOM05D000343 ORTHO05D002777 5.0e-06 55.5 103 36.9
Lj4g0019087 Lotus japonicus HOM05D000343 ORTHO05D002777 5.0e-06 55.5 49 55.1
Glyma.05G117300 Glycine max HOM05D000343 ORTHO05D009884 6.6e-06 55.1 84 58.3
Lsat_1_v5_gn_7_80921 Lactuca sativa HOM05D000343 ORTHO05D009884 6.6e-06 55.1 54 48.1
Ca_18353_v3 Cicer arietinum L. HOM05D000343 ORTHO05D002777 8.6e-06 54.7 154 41.6


User provided reference genes

Program Settings