Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.L00154 Eucalyptus grandis HOM05D003761 ORTHO05D004412 6.2e-100 367.5 185 100.0
Eucgr.L00155 Eucalyptus grandis HOM05D003761 ORTHO05D004412 4.7e-84 314.7 173 90.2
Sabra06G0004500 Salix brachista HOM05D003761 ORTHO05D004412 6.5e-41 171.4 172 48.8
QL05p067831 Quercus lobata HOM05D003761 ORTHO05D004412 3.6e-39 165.6 171 49.1
Potri.006G005600 Populus trichocarpa HOM05D003761 ORTHO05D004412 4.6e-39 165.2 171 51.5
PGR042G2523 Punica granatum HOM05D003761 ORTHO05D004412 5.1e-38 161.8 169 47.3
Cfa000041 Carpinus fangiana HOM05D003761 ORTHO05D004412 6.7e-38 161.4 175 50.9
CANSAT56G1869 Cannabis sativa HOM05D003761 ORTHO05D004412 8.8e-38 161.0 170 50.6
CiPaw.09G108600 Carya illinoinensis HOM05D003761 ORTHO05D004412 1.1e-37 160.6 168 46.4
Eucgr.E03855 Eucalyptus grandis HOM05D003761 ORTHO05D004412 1.5e-37 160.2 135 59.3
Haze_07014 Corylus avellana HOM05D003761 ORTHO05D004412 7.4e-37 157.9 173 49.7
Potri.016G006200 Populus trichocarpa HOM05D003761 ORTHO05D004412 9.7e-37 157.5 171 48.0
Prupe.4G004300 Prunus persica HOM05D003761 ORTHO05D004412 1.7e-36 156.8 144 53.5
Thecc.06G240300 Theobroma cacao HOM05D003761 ORTHO05D004412 2.2e-36 156.4 172 50.0
Ciclev10016770m.g Citrus clementina HOM05D003761 ORTHO05D004412 6.3e-36 154.8 182 48.9
Phvul.003G086700 Phaseolus vulgaris HOM05D003761 ORTHO05D004412 3.1e-35 152.5 166 47.0
Dinv15342 Davidia involucrata HOM05D003761 ORTHO05D004412 1.5e-34 150.2 156 51.3
CSS0009294 Camellia sinensis var. sinensis HOM05D003761 ORTHO05D004412 5.9e-34 148.3 153 50.3
CSS0045719 Camellia sinensis var. sinensis HOM05D003761 ORTHO05D004412 5.9e-34 148.3 153 50.3
Gohir.A06G204100 Gossypium hirsutum HOM05D003761 ORTHO05D004412 5.9e-34 148.3 165 46.7
Cpa.g.sc27.232 Carica papaya HOM05D003761 ORTHO05D004412 1.0e-33 147.5 138 55.8
Ca_20995_v3 Cicer arietinum L. HOM05D003761 ORTHO05D004412 1.0e-33 147.5 149 51.7
Gohir.D06G217400 Gossypium hirsutum HOM05D003761 ORTHO05D004412 1.0e-33 147.5 201 42.3
Duzib192G0597 Durio zibethinus HOM05D003761 ORTHO05D004412 1.7e-33 146.7 174 46.6
Lj4g0001357 Lotus japonicus HOM05D003761 ORTHO05D004412 1.7e-33 146.7 145 51.0
Atru.chr1.2273 Acer truncatum HOM05D003761 ORTHO05D004412 3.8e-33 145.6 182 46.2
Gorai.010G248800 Gossypium raimondii HOM05D003761 ORTHO05D004412 3.8e-33 145.6 167 44.9
Hma1.2p1_1175F.1_g263990 Hydrangea macrophylla HOM05D003761 ORTHO05D004412 3.8e-33 145.6 160 45.6
AUR62021816 Chenopodium quinoa HOM05D003761 ORTHO05D004412 5.0e-33 145.2 142 49.3
Sabra16G0011000 Salix brachista HOM05D003761 ORTHO05D004412 5.0e-33 145.2 172 44.2
Glyma.17G005900 Glycine max HOM05D003761 ORTHO05D004412 1.1e-32 144.1 170 48.2
Lsat_1_v5_gn_1_130120 Lactuca sativa HOM05D003761 ORTHO05D004412 1.1e-32 144.1 162 47.5
Lalb_Chr15g0088211 Lupinus albus HOM05D003761 ORTHO05D004412 1.1e-32 144.1 166 49.4
Actinidia39257 Actinidia chinensis HOM05D003761 ORTHO05D004412 1.4e-32 143.7 162 45.7
Nn1g07502 Nelumbo nucifera HOM05D003761 ORTHO05D004412 1.9e-32 143.3 175 41.1
TAR626G0912 Trochodendron aralioides HOM05D003761 ORTHO05D004412 4.2e-32 142.1 161 48.4
Sed0014180 Sechium edule HOM05D003761 ORTHO05D004412 5.5e-32 141.7 180 43.9
Lsat_1_v5_gn_7_13080 Lactuca sativa HOM05D003761 ORTHO05D004412 7.2e-32 141.4 162 43.2
Sed0021615 Sechium edule HOM05D003761 ORTHO05D004412 7.2e-32 141.4 156 46.2
EL10Ac8g20260 Beta vulgaris HOM05D003761 ORTHO05D004412 1.2e-31 140.6 147 49.0
MBI18_g42884_MAGBIO Magnolia biondii HOM05D003761 ORTHO05D004412 1.2e-31 140.6 160 46.2
Psat4g002880 Pisum sativum HOM05D003761 ORTHO05D004412 1.2e-31 140.6 157 48.4
MD10G1338600 Malus domestica HOM05D003761 ORTHO05D004412 1.6e-31 140.2 171 45.0
Rhsim13G0141000 Rhododendron simsii HOM05D003761 ORTHO05D004412 1.6e-31 140.2 167 46.7
TWI38G2030 Tripterygium wilfordii HOM05D003761 ORTHO05D004412 3.6e-31 139.0 176 45.5
CsaV3_1G015780 Cucumis sativus L. HOM05D003761 ORTHO05D004412 4.7e-31 138.7 180 44.4
CsaV3_UNG065500 Cucumis sativus L. HOM05D003761 ORTHO05D004412 4.7e-31 138.7 180 44.4
Actinidia11903 Actinidia chinensis HOM05D003761 ORTHO05D004412 6.1e-31 138.3 170 45.9
FAN25G2178 Fragaria x ananassa HOM05D003761 ORTHO05D004412 7.9e-31 137.9 144 49.3
Lalb_Chr13g0304361 Lupinus albus HOM05D003761 ORTHO05D004412 7.9e-31 137.9 146 49.3
AUR62012843 Chenopodium quinoa HOM05D003761 ORTHO05D004412 1.4e-30 137.1 143 47.6
FvH4_3g00370 Fragaria vesca HOM05D003761 ORTHO05D004412 1.8e-30 136.7 142 48.6
PGR004G2813 Punica granatum HOM05D003761 ORTHO05D004412 1.8e-30 136.7 175 49.7
ClCG01G010750 Citrullus lanatus HOM05D003761 ORTHO05D004412 2.3e-30 136.3 166 44.0
Lj6g0023004 Lotus japonicus HOM05D003761 ORTHO05D004412 2.3e-30 136.3 168 45.8
vmacro03612 Vaccinium macrocarpon HOM05D003761 ORTHO05D004412 2.3e-30 136.3 167 46.1
COL.COLO4_31936 Corchorus olitorius HOM05D003761 ORTHO05D004412 3.0e-30 136.0 140 48.6
MD05G1360900 Malus domestica HOM05D003761 ORTHO05D004412 3.0e-30 136.0 170 44.7
MELO3C025526.2 Cucumis melo HOM05D003761 ORTHO05D004412 3.9e-30 135.6 180 42.8
Aqoxy4G01086 Aquilegia oxysepala HOM05D003761 ORTHO05D004412 5.2e-30 135.2 176 42.0
VMungo1215G0779 Vigna mungo HOM05D003761 ORTHO05D004412 6.7e-30 134.8 161 46.6
Lj2C256G8 Lonicera japonica HOM05D003761 ORTHO05D004412 8.8e-30 134.4 184 41.3
FAN21G2431 Fragaria x ananassa HOM05D003761 ORTHO05D004412 1.1e-29 134.0 144 47.2
vmacro03611 Vaccinium macrocarpon HOM05D003761 ORTHO05D004412 2.6e-29 132.9 141 46.8
vmacro23224 Vaccinium macrocarpon HOM05D003761 ORTHO05D004412 2.6e-29 132.9 141 46.8
TPR.G5987 Trifolium pratense HOM05D003761 ORTHO05D004412 5.7e-29 131.7 141 48.9
ECA248G3040 Erigeron canadensis HOM05D003761 ORTHO05D004412 7.4e-29 131.3 170 42.9
MSTRG.14590 Avicennia marina HOM05D003761 ORTHO05D004412 9.7e-29 131.0 180 41.1
arahy.Tifrunner.gnm1.ann1.UZ71G8 Arachis hypogaea HOM05D003761 ORTHO05D004412 1.7e-28 130.2 166 44.0
MBI18_g27019_MAGBIO Magnolia biondii HOM05D003761 ORTHO05D004412 1.7e-28 130.2 127 48.8
Medtr4g133932 Medicago truncatula HOM05D003761 ORTHO05D004412 1.7e-28 130.2 163 44.8
HPP92_024932 Vanilla planifolia HOM05D003761 ORTHO05D004412 8.2e-28 127.9 170 41.8
Manes.09G083000 Manihot esculenta HOM05D003761 ORTHO05D004412 1.1e-27 127.5 175 40.0
MBI19_g14888_MAGBIO Magnolia biondii HOM05D003761 ORTHO05D004412 1.4e-27 127.1 154 44.8
arahy.Tifrunner.gnm1.ann1.YY2BB8 Arachis hypogaea HOM05D003761 ORTHO05D004412 2.4e-27 126.3 167 44.3
DCAR_030834 Daucus carota HOM05D003761 ORTHO05D004412 4.1e-27 125.6 154 41.6
HPP92_024936 Vanilla planifolia HOM05D003761 ORTHO05D004412 4.1e-27 125.6 170 41.2
MSTRG.13107 Avicennia marina HOM05D003761 ORTHO05D004412 5.3e-27 125.2 167 42.5
HanXRQChr01g0003591 Helianthus annuus HOM05D003761 ORTHO05D004412 9.1e-27 124.4 164 41.5
Sc24g0000400 Simmondsia chinensis HOM05D003761 ORTHO05D004412 2.0e-26 123.2 156 41.7
AL8G10320 Arabidopsis lyrata HOM05D003761 ORTHO05D004412 2.6e-26 122.9 164 43.3
TWI38G1412 Tripterygium wilfordii HOM05D003761 ORTHO05D004412 2.6e-26 122.9 185 38.9
Migut.H01629 Erythranthe guttata HOM05D003761 ORTHO05D004412 4.5e-26 122.1 163 41.7
Oeu057021.1 Olea europaea HOM05D003761 ORTHO05D004412 7.7e-26 121.3 148 40.5
Migut.M01442 Erythranthe guttata HOM05D003761 ORTHO05D004412 1.3e-25 120.6 170 41.8
SGA_v2.0_scaffold49G18223 Striga asiatica HOM05D003761 ORTHO05D004412 1.3e-25 120.6 165 42.4
Actinidia02285 Actinidia chinensis HOM05D000829 ORTHO05D000690 2.9e-25 119.4 159 44.0
CAN.G1186.30 Capsicum annuum HOM05D003761 ORTHO05D004412 2.9e-25 119.4 186 37.1
CARHR173680 Cardamine hirsuta HOM05D003761 ORTHO05D004412 2.9e-25 119.4 157 41.4
Sp2g12340 Schrenkiella parvula HOM05D003761 ORTHO05D004412 5.0e-25 118.6 167 40.7
SalBow8G1906 Salvia bowleyana HOM05D003761 ORTHO05D004412 8.5e-25 117.9 159 43.4
THA.LOC104806736 Tarenaya hassleriana HOM05D003761 ORTHO05D004412 1.1e-24 117.5 161 41.6
Oeu002779.1 Olea europaea HOM05D003761 ORTHO05D004412 3.2e-24 115.9 174 37.9
GSVIVG01005138001 Vitis vinifera HOM05D003761 ORTHO05D004412 9.4e-24 114.4 130 46.2
CDE10G1059 Ceratophyllum demersum HOM05D003761 ORTHO05D004412 1.6e-23 113.6 164 39.6
Aa31LG2G12410 Aethionema arabicum HOM05D003761 ORTHO05D004412 2.7e-23 112.8 161 37.3
BcaC06g31357 Brassica carinata HOM05D003761 ORTHO05D004412 2.7e-23 112.8 165 39.4
Thhalv10001056m.g Eutrema salsugineum HOM05D003761 ORTHO05D004412 2.7e-23 112.8 168 38.1
SGA_v2.0_scaffold7G03701 Striga asiatica HOM05D003761 ORTHO05D004412 2.7e-23 112.8 170 38.8
Oeu025960.1 Olea europaea HOM05D003761 ORTHO05D004412 3.6e-23 112.5 165 37.0
Oeu025400.1 Olea europaea HOM05D003761 ORTHO05D004412 4.7e-23 112.1 149 40.9
PSO675G1588 Papaver somniferum HOM05D003761 ORTHO05D004412 6.1e-23 111.7 162 38.3
Sopen11g006960 Solanum pennellii HOM05D003761 ORTHO05D004412 6.1e-23 111.7 143 40.6
Cc09_g00350 Coffea canephora HOM05D003761 ORTHO05D004412 1.4e-22 110.5 144 45.1
PSO541G3650 Papaver somniferum HOM05D003761 ORTHO05D004412 1.4e-22 110.5 162 39.5
Carub.0008s0015 Capsella rubella HOM05D003761 ORTHO05D004412 1.8e-22 110.2 162 38.9
AT5G47635 Arabidopsis thaliana HOM05D003761 ORTHO05D004412 2.3e-22 109.8 168 39.9
BcaNung03472 Brassica carinata HOM05D003761 ORTHO05D004412 2.3e-22 109.8 136 44.9
C07p31280 Brassica napus HOM05D003761 ORTHO05D004412 3.0e-22 109.4 163 38.7
SGA_v2.0_scaffold186G40120 Striga asiatica HOM05D003761 ORTHO05D004412 3.0e-22 109.4 167 38.9
MSTRG.7132 Avicennia marina HOM05D003761 ORTHO05D004412 5.2e-22 108.6 167 38.3
A06p44900 Brassica napus HOM05D003761 ORTHO05D004412 5.2e-22 108.6 158 36.7
A09p23140 Brassica napus HOM05D003761 ORTHO05D004412 5.2e-22 108.6 169 39.6
BraA06t27361Z Brassica rapa HOM05D003761 ORTHO05D004412 5.2e-22 108.6 158 36.7
BraA09t37917Z Brassica rapa HOM05D003761 ORTHO05D004412 5.2e-22 108.6 169 39.6
Peaxi162Scf00558g00515 Petunia axillaris HOM05D003761 ORTHO05D004412 6.7e-22 108.2 154 38.3
Ah.09g233900 Amaranthus hybridus HOM05D003761 ORTHO05D004412 1.2e-21 107.5 140 40.7
BolC7t43669H Brassica oleracea HOM05D003761 ORTHO05D004412 1.5e-21 107.1 158 38.0
Carub.0004s2229 Capsella rubella HOM05D003761 ORTHO05D004412 1.5e-21 107.1 164 42.1
Solyc11g012170.1 Solanum lycopersicum HOM05D003761 ORTHO05D004412 1.5e-21 107.1 137 41.6
Aa31LG9G5380 Aethionema arabicum HOM05D003761 ORTHO05D004412 2.0e-21 106.7 164 39.0
BcaC04g21612 Brassica carinata HOM05D003761 ORTHO05D004412 2.0e-21 106.7 161 36.6
C09p29870 Brassica napus HOM05D003761 ORTHO05D004412 2.0e-21 106.7 161 36.6
Sp4g22430 Schrenkiella parvula HOM05D003761 ORTHO05D004412 2.0e-21 106.7 164 40.9
HanXRQChr15g0470241 Helianthus annuus HOM05D003761 ORTHO05D004412 3.3e-21 105.9 163 41.1
A05p06360 Brassica napus HOM05D003761 ORTHO05D004412 7.5e-21 104.8 164 40.2
BraA05t19604Z Brassica rapa HOM05D003761 ORTHO05D004412 7.5e-21 104.8 164 40.2
PGSC0003DMG400013274 Solanum tuberosum HOM05D003761 ORTHO05D004412 7.5e-21 104.8 137 40.9
BcaB07g30768 Brassica carinata HOM05D003761 ORTHO05D004412 9.7e-21 104.4 136 40.4
Hma1.2p1_1175F.1_g263980 Hydrangea macrophylla HOM05D003761 ORTHO05D004412 9.7e-21 104.4 106 43.4
BcaC09g50449 Brassica carinata HOM05D003761 ORTHO05D004412 1.3e-20 104.0 136 44.1
C01p25300 Brassica napus HOM05D003761 ORTHO05D004412 1.3e-20 104.0 136 44.1
BolC1t02480H Brassica oleracea HOM05D003761 ORTHO05D004412 1.3e-20 104.0 136 44.1
CARHR223820 Cardamine hirsuta HOM05D003761 ORTHO05D004412 1.3e-20 104.0 156 39.7
AL7G37500 Arabidopsis lyrata HOM05D003761 ORTHO05D004412 2.8e-20 102.8 136 41.9
BcaC06g34236 Brassica carinata HOM05D003761 ORTHO05D004412 3.7e-20 102.4 165 37.0
BolC4t22355H Brassica oleracea HOM05D003761 ORTHO05D004412 3.7e-20 102.4 164 39.0
AT4G17215 Arabidopsis thaliana HOM05D003761 ORTHO05D004412 1.1e-19 100.9 136 41.2
BcaB02g09051 Brassica carinata HOM05D003761 ORTHO05D004412 1.1e-19 100.9 167 40.1
BcaB06g29129 Brassica carinata HOM05D003761 ORTHO05D004412 1.1e-19 100.9 174 37.4
BraA01t01941Z Brassica rapa HOM05D003761 ORTHO05D004412 1.4e-19 100.5 145 42.1
Thhalv10026465m.g Eutrema salsugineum HOM05D003761 ORTHO05D004412 1.4e-19 100.5 136 40.4
Sp7g16980 Schrenkiella parvula HOM05D003761 ORTHO05D004412 1.4e-19 100.5 136 41.9
Thhalv10017342m.g Eutrema salsugineum HOM05D003761 ORTHO05D004412 2.4e-19 99.8 142 39.4
AL4G37770 Arabidopsis lyrata HOM05D003761 ORTHO05D004412 4.1e-19 99.0 185 36.8
BolC4t28284H Brassica oleracea HOM05D003761 ORTHO05D004412 5.3e-19 98.6 170 37.6
Carub.0007s2420 Capsella rubella HOM05D003761 ORTHO05D004412 7.0e-19 98.2 136 39.7
BcaB02g09050 Brassica carinata HOM05D003761 ORTHO05D004412 9.1e-19 97.8 167 38.3
Os10g0208600 Oryza sativa ssp. japonica HOM05D003761 ORTHO05D004412 9.1e-19 97.8 141 41.8
BcaNung00112 Brassica carinata HOM05D003761 ORTHO05D004412 1.2e-18 97.4 126 42.9
A04p30050 Brassica napus HOM05D003761 ORTHO05D004412 1.6e-18 97.1 172 36.6
Nitab4.5_0000143g0280 Nicotiana tabacum HOM05D003761 ORTHO05D004412 1.6e-18 97.1 175 34.3
A03p50350 Brassica napus HOM05D003761 ORTHO05D004412 2.0e-18 96.7 136 42.6
BraA03t14124Z Brassica rapa HOM05D003761 ORTHO05D004412 2.0e-18 96.7 136 42.6
BcaC02g07354 Brassica carinata HOM05D003761 ORTHO05D004412 2.7e-18 96.3 170 37.1
Aa31LG5G19480 Aethionema arabicum HOM05D003761 ORTHO05D004412 3.5e-18 95.9 137 40.9
AT2G40113 Arabidopsis thaliana HOM05D003761 ORTHO05D004412 3.5e-18 95.9 193 35.8
BraA04t18501Z Brassica rapa HOM05D003761 ORTHO05D004412 3.5e-18 95.9 172 36.0
Os10g0206500 Oryza sativa ssp. japonica HOM05D003761 ORTHO05D004412 4.5e-18 95.5 161 39.8
CARHR135090 Cardamine hirsuta HOM05D003761 ORTHO05D004412 5.9e-18 95.1 152 39.5
Zm00001eb050510 Zea mays HOM05D003761 ORTHO05D004412 1.3e-17 94.0 149 44.3
unitig_52.g17560 Utricularia gibba HOM05D003761 ORTHO05D004412 1.7e-17 93.6 184 32.1
BcaC06g33549 Brassica carinata HOM05D003761 ORTHO05D004412 2.9e-17 92.8 136 41.2
C07p48660 Brassica napus HOM05D003761 ORTHO05D004412 2.9e-17 92.8 136 41.2
BolC7t45373H Brassica oleracea HOM05D003761 ORTHO05D004412 2.9e-17 92.8 136 41.2
Nitab4.5_0001198g0070 Nicotiana tabacum HOM05D003761 ORTHO05D004412 5.0e-17 92.0 175 34.3
Sopen11g007440 Solanum pennellii HOM05D003761 ORTHO05D004412 5.0e-17 92.0 151 38.4
Sc05g0009870 Simmondsia chinensis HOM05D003761 ORTHO05D004412 6.5e-17 91.7 111 42.3
Solyc11g012705.2 Solanum lycopersicum HOM05D003761 ORTHO05D004412 6.5e-17 91.7 151 38.4
Peaxi162Scf00442g00073 Petunia axillaris HOM05D003761 ORTHO05D004412 8.5e-17 91.3 141 37.6
THA.LOC104798379 Tarenaya hassleriana HOM05D003761 ORTHO05D004412 8.5e-17 91.3 159 35.8
BcaNung03474 Brassica carinata HOM05D003761 ORTHO05D004412 5.5e-16 88.6 137 39.4
CAN.G1156.14 Capsicum annuum HOM05D003761 ORTHO05D004412 7.2e-16 88.2 170 35.3
PGSC0003DMG400013298 Solanum tuberosum HOM05D003761 ORTHO05D004412 2.7e-15 86.3 152 37.5
ATR0827G170 Amborella trichopoda HOM05D003761 ORTHO05D004412 1.0e-14 84.3 91 45.1
Cpa.g.sc27.234 Carica papaya HOM05D003761 ORTHO05D004412 2.3e-14 83.2 91 42.9
BolC9t55850H Brassica oleracea HOM05D003761 ORTHO05D004412 2.0e-13 80.1 92 41.3
C04p67800 Brassica napus HOM05D003761 ORTHO05D004412 7.0e-11 71.6 85 43.5
SEGI_00399 Sequoiadendron giganteum HOM05D003328 ORTHO05D003722 1.0e-06 57.8 121 33.9
SEGI_33454 Sequoiadendron giganteum HOM05D003328 ORTHO05D003722 1.0e-06 57.8 97 41.2


User provided reference genes

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