Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.L00085 Eucalyptus grandis HOM05D004310 ORTHO05D005403 6.2e-162 574.3 346 100.0
Eucgr.D02370 Eucalyptus grandis HOM05D004310 ORTHO05D005403 4.0e-145 518.5 338 93.5
PGR042G3601 Punica granatum HOM05D004310 ORTHO05D005403 5.1e-63 245.7 301 53.8
Dinv32582 Davidia involucrata HOM05D004310 ORTHO05D005403 7.6e-59 231.9 340 47.6
Potri.002G170200 Populus trichocarpa HOM05D004310 ORTHO05D005403 4.9e-58 229.2 345 44.3
TWI14G0601 Tripterygium wilfordii HOM05D004310 ORTHO05D005403 4.9e-58 229.2 344 47.4
Cpa.g.sc96.7 Carica papaya HOM05D004310 ORTHO05D005403 8.4e-58 228.4 340 45.3
Atru.chr5.660 Acer truncatum HOM05D004310 ORTHO05D005403 6.0e-56 222.2 332 48.2
MD01G1080000 Malus domestica HOM05D004310 ORTHO05D005403 1.7e-55 220.7 345 43.8
CiPaw.02G040300 Carya illinoinensis HOM05D004310 ORTHO05D005403 3.9e-55 219.5 342 46.5
Thecc.01G343300 Theobroma cacao HOM05D004310 ORTHO05D005403 3.9e-55 219.5 335 47.5
CsaV3_6G007120 Cucumis sativus L. HOM05D004310 ORTHO05D005403 5.1e-55 219.2 341 48.4
Dinv35111 Davidia involucrata HOM05D004310 ORTHO05D005403 6.6e-55 218.8 335 47.2
MELO3C022416.2 Cucumis melo HOM05D004310 ORTHO05D005403 8.7e-55 218.4 357 47.6
TWI59G1199 Tripterygium wilfordii HOM05D004310 ORTHO05D005403 8.7e-55 218.4 344 43.6
MD07G1148800 Malus domestica HOM05D004310 ORTHO05D005403 1.5e-54 217.6 344 44.2
ClCG06G001190 Citrullus lanatus HOM05D004310 ORTHO05D005403 5.6e-54 215.7 335 48.7
Sabra02G0142100 Salix brachista HOM05D004310 ORTHO05D005403 1.2e-53 214.5 349 41.8
Sabra14G0071900 Salix brachista HOM05D004310 ORTHO05D005403 1.2e-53 214.5 348 42.8
Lj7A501T50 Lonicera japonica HOM05D004310 ORTHO05D005403 6.2e-53 212.2 290 47.2
Duzib138G0762 Durio zibethinus HOM05D004310 ORTHO05D005403 1.8e-52 210.7 339 47.2
Rhsim07G0004600 Rhododendron simsii HOM05D004310 ORTHO05D005403 3.1e-52 209.9 348 45.4
Gorai.004G152000 Gossypium raimondii HOM05D004310 ORTHO05D005403 4.0e-52 209.5 290 52.1
Prupe.2G187300 Prunus persica HOM05D004310 ORTHO05D005403 4.0e-52 209.5 340 44.1
Gohir.A08G125500 Gossypium hirsutum HOM05D004310 ORTHO05D005403 9.9e-51 204.9 290 51.4
Potri.014G098100 Populus trichocarpa HOM05D004310 ORTHO05D005403 9.9e-51 204.9 344 43.6
Duzib133G1258 Durio zibethinus HOM05D004310 ORTHO05D005403 3.8e-50 203.0 347 43.2
RcHm_v2.0_Chr1g0359351 Rosa chinensis HOM05D004310 ORTHO05D005403 3.8e-50 203.0 341 41.9
THA.LOC104801375 Tarenaya hassleriana HOM05D004310 ORTHO05D005403 3.8e-50 203.0 299 44.5
Gohir.D08G146400 Gossypium hirsutum HOM05D004310 ORTHO05D005403 8.4e-50 201.8 292 51.4
QL04p061163 Quercus lobata HOM05D004310 ORTHO05D005403 1.1e-49 201.4 335 44.2
arahy.Tifrunner.gnm1.ann1.BIP3BJ Arachis hypogaea HOM05D004310 ORTHO05D005403 1.9e-49 200.7 324 42.6
arahy.Tifrunner.gnm1.ann1.Z66XJ9 Arachis hypogaea HOM05D004310 ORTHO05D005403 7.1e-49 198.7 338 41.4
Sed0010710 Sechium edule HOM05D004310 ORTHO05D005403 7.1e-49 198.7 302 49.0
Actinidia10134 Actinidia chinensis HOM05D004310 ORTHO05D005403 1.2e-48 198.0 221 52.0
Lalb_Chr18g0044401 Lupinus albus HOM05D004310 ORTHO05D005403 1.2e-48 198.0 322 42.9
THA.LOC104817053 Tarenaya hassleriana HOM05D004310 ORTHO05D005403 2.1e-48 197.2 281 46.3
CANSAT56G1285 Cannabis sativa HOM05D004310 ORTHO05D005403 4.6e-48 196.1 366 41.8
HanXRQChr06g0170681 Helianthus annuus HOM05D004310 ORTHO05D005403 4.6e-48 196.1 293 47.8
Manes.05G023500 Manihot esculenta HOM05D004310 ORTHO05D005403 1.0e-47 194.9 221 61.5
TAR375G0608 Trochodendron aralioides HOM05D004310 ORTHO05D005403 1.0e-47 194.9 334 43.4
COL.COLO4_06292 Corchorus olitorius HOM05D004310 ORTHO05D005403 6.6e-47 192.2 220 53.2
Medtr7g117320 Medicago truncatula HOM05D004310 ORTHO05D005403 6.6e-47 192.2 295 44.7
Ciclev10020037m.g Citrus clementina HOM05D004310 ORTHO05D005403 1.5e-46 191.0 225 50.7
Gorai.008G124900 Gossypium raimondii HOM05D004310 ORTHO05D005403 4.3e-46 189.5 303 47.2
Thhalv10028668m.g Eutrema salsugineum HOM05D004310 ORTHO05D005403 7.3e-46 188.7 289 44.6
Gohir.D12G115400 Gossypium hirsutum HOM05D004310 ORTHO05D005403 9.6e-46 188.3 220 51.8
AL6G52400 Arabidopsis lyrata HOM05D004310 ORTHO05D005403 6.2e-45 185.7 285 46.0
Lj1g0027458 Lotus japonicus HOM05D004310 ORTHO05D005403 1.8e-44 184.1 322 42.9
Glyma.19G255600 Glycine max HOM05D004310 ORTHO05D005403 2.4e-44 183.7 307 47.9
Lalb_Chr04g0261561 Lupinus albus HOM05D004310 ORTHO05D005403 3.1e-44 183.3 327 43.1
Ca_09504_v3 Cicer arietinum L. HOM05D004310 ORTHO05D005403 5.3e-44 182.6 297 45.8
Glyma.03G257300 Glycine max HOM05D004310 ORTHO05D005403 1.2e-43 181.4 336 43.8
TPR.G4733 Trifolium pratense HOM05D004310 ORTHO05D005403 4.5e-43 179.5 292 46.2
Sp6g01150 Schrenkiella parvula HOM05D004310 ORTHO05D005403 9.9e-43 178.3 312 40.1
Sc01g0002750 Simmondsia chinensis HOM05D004310 ORTHO05D005403 1.3e-42 177.9 355 39.2
Carub.0006s3602 Capsella rubella HOM05D004310 ORTHO05D005403 2.2e-42 177.2 221 46.6
Phvul.006G112400 Phaseolus vulgaris HOM05D004310 ORTHO05D005403 2.2e-42 177.2 327 46.5
VMungo0540G1382 Vigna mungo HOM05D004310 ORTHO05D005403 4.9e-42 176.0 334 46.1
BolC9t53025H Brassica oleracea HOM05D004310 ORTHO05D005403 6.4e-42 175.6 289 44.3
FAN03G3179 Fragaria x ananassa HOM05D004310 ORTHO05D005403 6.4e-42 175.6 338 39.6
A03p31750 Brassica napus HOM05D004310 ORTHO05D005403 8.4e-42 175.3 222 48.2
BraA03t12352Z Brassica rapa HOM05D004310 ORTHO05D005403 8.4e-42 175.3 222 48.2
Cfa003806 Carpinus fangiana HOM05D004310 ORTHO05D005403 8.4e-42 175.3 338 42.6
Aa31LG5G960 Aethionema arabicum HOM05D004310 ORTHO05D005403 1.4e-41 174.5 309 43.7
Cc02_g39270 Coffea canephora HOM05D004310 ORTHO05D005403 2.4e-41 173.7 326 42.3
Sp1g00950 Schrenkiella parvula HOM05D004310 ORTHO05D005403 2.4e-41 173.7 289 42.9
Hund27201 Selenicereus undatus HOM05D004310 ORTHO05D005403 2.4e-41 173.7 348 37.9
C03p38780 Brassica napus HOM05D004310 ORTHO05D005403 4.2e-41 172.9 327 40.7
vmacro13157 Vaccinium macrocarpon HOM05D004310 ORTHO05D005403 7.1e-41 172.2 341 46.0
Cpa.g.sc148.40 Carica papaya HOM05D004310 ORTHO05D005403 1.2e-40 171.4 213 47.4
Haze_15649 Corylus avellana HOM05D004310 ORTHO05D005403 1.2e-40 171.4 226 49.1
BcaB01g02305 Brassica carinata HOM05D004310 ORTHO05D005403 1.6e-40 171.0 220 46.4
Psat3g002680 Pisum sativum HOM05D004310 ORTHO05D005403 1.6e-40 171.0 297 44.4
BcaC01g06834 Brassica carinata HOM05D004310 ORTHO05D005403 2.1e-40 170.6 218 46.8
AUR62004485 Chenopodium quinoa HOM05D004310 ORTHO05D005403 2.1e-40 170.6 343 39.1
C09p00900 Brassica napus HOM05D004310 ORTHO05D005403 2.7e-40 170.2 328 40.9
BolC3t16153H Brassica oleracea HOM05D004310 ORTHO05D005403 2.7e-40 170.2 219 46.6
FAN06G2059 Fragaria x ananassa HOM05D004310 ORTHO05D005403 2.7e-40 170.2 349 38.7
A09p00270 Brassica napus HOM05D004310 ORTHO05D005403 3.5e-40 169.9 220 46.8
CAN.G986.11 Capsicum annuum HOM05D004310 ORTHO05D005403 3.5e-40 169.9 349 43.8
Migut.O00903 Erythranthe guttata HOM05D004310 ORTHO05D005403 3.5e-40 169.9 383 33.9
EL10Ac1g00277 Beta vulgaris HOM05D004310 ORTHO05D005403 4.6e-40 169.5 216 48.6
CDE10G0591 Ceratophyllum demersum HOM05D004310 ORTHO05D005403 4.6e-40 169.5 287 44.3
CDE10G1323 Ceratophyllum demersum HOM05D004310 ORTHO05D005403 4.6e-40 169.5 297 43.8
Migut.N01550 Erythranthe guttata HOM05D004310 ORTHO05D005403 4.6e-40 169.5 381 34.1
FvH4_7g16340 Fragaria vesca HOM05D004310 ORTHO05D005403 7.9e-40 168.7 348 38.2
AT4G01000 Arabidopsis thaliana HOM05D004310 ORTHO05D005403 1.0e-39 168.3 285 43.9
BraA09t35754Z Brassica rapa HOM05D004310 ORTHO05D005403 1.8e-39 167.5 289 42.6
FAN10G0275 Fragaria x ananassa HOM05D004310 ORTHO05D005403 1.8e-39 167.5 338 38.8
FAN10G2670 Fragaria x ananassa HOM05D004310 ORTHO05D005403 1.8e-39 167.5 338 38.8
ECA236G2788 Erigeron canadensis HOM05D004310 ORTHO05D005403 2.3e-39 167.2 248 48.0
FAN01G1347 Fragaria x ananassa HOM05D004310 ORTHO05D005403 1.5e-38 164.5 265 42.6
Nitab4.5_0004999g0060 Nicotiana tabacum HOM05D004310 ORTHO05D005403 1.9e-38 164.1 289 52.6
CSS0029608 Camellia sinensis var. sinensis HOM05D004310 ORTHO05D005403 2.5e-38 163.7 301 46.8
Peaxi162Scf00786g00321 Petunia axillaris HOM05D004310 ORTHO05D005403 4.3e-38 162.9 300 44.7
SGA_v2.0_scaffold43G16367 Striga asiatica HOM05D004310 ORTHO05D005403 9.6e-38 161.8 339 38.6
SalBow3G2754 Salvia bowleyana HOM05D004310 ORTHO05D005403 3.7e-37 159.8 379 36.9
Solyc01g095790.4 Solanum lycopersicum HOM05D004310 ORTHO05D005403 4.8e-37 159.5 310 43.2
PGSC0003DMG400000104 Solanum tuberosum HOM05D004310 ORTHO05D005403 3.1e-36 156.8 359 41.2
MSTRG.20902 Avicennia marina HOM05D004310 ORTHO05D005403 6.9e-36 155.6 342 39.2
Aqoxy7G00105 Aquilegia oxysepala HOM05D004310 ORTHO05D005403 3.4e-35 153.3 335 39.4
unitig_62.g23796 Utricularia gibba HOM05D004310 ORTHO05D005403 5.8e-35 152.5 360 34.7
Sopen01g039540 Solanum pennellii HOM05D004310 ORTHO05D005403 1.7e-34 151.0 312 42.0
Lsat_1_v5_gn_7_1281 Lactuca sativa HOM05D004310 ORTHO05D005403 4.9e-34 149.4 333 39.9
MBI06_g08458_MAGBIO Magnolia biondii HOM05D004310 ORTHO05D005403 8.4e-34 148.7 312 40.7
Nitab4.5_0000838g0210 Nicotiana tabacum HOM05D004310 ORTHO05D005403 8.4e-34 148.7 290 46.9
Oeu008696.1 Olea europaea HOM05D004310 ORTHO05D005403 8.4e-34 148.7 335 39.1
PSO384G0413 Papaver somniferum HOM05D004310 ORTHO05D005403 1.1e-33 148.3 257 41.2
PSO339G6050 Papaver somniferum HOM05D004310 ORTHO05D005403 3.2e-33 146.7 256 41.0
Aa31LG1G10680 Aethionema arabicum HOM05D004310 ORTHO05D005403 1.6e-32 144.4 196 49.0
CARHR249360 Cardamine hirsuta HOM05D004310 ORTHO05D005403 1.6e-32 144.4 209 42.1
Os01g0681600 Oryza sativa ssp. japonica HOM05D004310 ORTHO05D005403 2.1e-32 144.1 337 35.0
MSTRG.17338 Avicennia marina HOM05D004310 ORTHO05D005403 7.9e-32 142.1 331 39.3
Aa31sc508G10 Aethionema arabicum HOM05D004310 ORTHO05D005403 1.3e-31 141.4 128 60.2
Oeu004945.1 Olea europaea HOM05D004310 ORTHO05D005403 1.8e-31 141.0 331 38.4
Ah.05g179620 Amaranthus hybridus HOM05D004310 ORTHO05D005403 2.3e-31 140.6 277 39.4
Zm00001eb156640 Zea mays HOM05D004310 ORTHO05D005403 1.9e-30 137.5 297 35.7
ATR0213G003 Amborella trichopoda HOM05D004310 ORTHO05D005403 1.6e-29 134.4 327 37.9
Zm00001eb360440 Zea mays HOM05D004310 ORTHO05D005403 1.6e-29 134.4 321 35.2
SMO270G0076 Selaginella moellendorffii HOM05D004310 ORTHO05D005403 2.8e-29 133.7 125 56.8
Nn1g01876 Nelumbo nucifera HOM05D004310 ORTHO05D005403 8.2e-29 132.1 271 42.1
DCAR_025250 Daucus carota HOM05D004310 ORTHO05D005403 1.2e-27 128.3 131 55.7
AagrBONN_evm.TU.Sc2ySwM_344.4433 Anthoceros agrestis HOM05D004310 ORTHO05D005403 4.5e-27 126.3 133 56.4
AT3G06455 Arabidopsis thaliana HOM05D004310 ORTHO05D005403 2.2e-26 124.0 231 36.4
Mapoly0080s0014 Marchantia polymorpha HOM05D004310 ORTHO05D005403 2.1e-24 117.5 133 54.9
CBR_g29554 Chara braunii HOM05D004310 ORTHO05D005403 5.1e-23 112.8 153 45.8
MBI13_g41011_MAGBIO Magnolia biondii HOM05D004310 ORTHO05D005403 6.7e-23 112.5 139 50.4
Pp3c22_11010 Physcomitrium patens HOM05D004310 ORTHO05D005403 1.3e-21 108.2 227 39.2
Actinidia20238 Actinidia chinensis HOM05D004310 ORTHO05D005403 4.5e-19 99.8 201 45.3
Cre07.g322100 Chlamydomonas reinhardtii HOM05D000218 ORTHO05D000125 7.7e-19 99.0 121 52.1
MCO02G408 Micromonas commoda HOM05D004310 ORTHO05D005403 4.2e-17 93.2 141 45.4
Lsat_1_v5_gn_8_60321 Lactuca sativa HOM05D004310 ORTHO05D005403 4.3e-14 83.2 56 78.6
GSVIVG01027093001 Vitis vinifera HOM05D004310 ORTHO05D005403 4.2e-09 66.6 148 39.2
arahy.Tifrunner.gnm1.ann1.FB4WK1 Arachis hypogaea HOM05D004310 ORTHO05D005403 6.1e-08 62.8 106 36.8
AUR62023468 Chenopodium quinoa HOM05D004310 ORTHO05D005403 7.9e-08 62.4 206 35.0
Gohir.A12G111933 Gossypium hirsutum HOM05D004310 ORTHO05D005403 3.9e-07 60.1 188 37.8
HPP92_024432 Vanilla planifolia HOM05D004310 ORTHO05D005403 5.7e-06 56.2 191 32.5
ECA236G4521 Erigeron canadensis HOM05D000218 ORTHO05D000125 7.4e-06 55.8 123 39.8


User provided reference genes

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