Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.L00013 Eucalyptus grandis HOM05D001200 ORTHO05D009778 2.4e-25 118.2 67 100.0
HanXRQChr10g0289681 Helianthus annuus HOM05D001200 ORTHO05D009778 4.0e-17 90.9 80 71.2
PGR111G0025 Punica granatum HOM05D001200 ORTHO05D009778 1.2e-16 89.4 102 60.8
CAN.G965.6 Capsicum annuum HOM05D001200 ORTHO05D009778 3.4e-16 87.8 102 59.8
CAN.G1526.7 Capsicum annuum HOM05D001200 ORTHO05D009778 4.5e-16 87.4 102 59.8
CAN.G278.3 Capsicum annuum HOM05D001200 ORTHO05D009778 4.5e-16 87.4 102 59.8
PGSC0003DMG402011339 Solanum tuberosum HOM05D001200 ORTHO05D009778 4.5e-16 87.4 102 59.8
HanXRQChr09g0246681 Helianthus annuus HOM05D001200 ORTHO05D009778 9.9e-16 86.3 79 69.6
Hma1.2p1_0656F.1_g196803 Hydrangea macrophylla HOM05D001200 ORTHO05D009778 1.7e-15 85.5 102 58.8
Migut.D01252 Erythranthe guttata HOM05D001200 ORTHO05D009778 2.2e-15 85.1 102 57.8
DCAR_032538 Daucus carota HOM05D001200 ORTHO05D009778 2.9e-15 84.7 102 56.9
HanXRQChr00c0336g0573661 Helianthus annuus HOM05D001200 ORTHO05D009778 4.9e-15 84.0 102 56.9
HanXRQChr05g0152441 Helianthus annuus HOM05D001200 ORTHO05D009778 4.9e-15 84.0 102 56.9
HanXRQChr09g0258511 Helianthus annuus HOM05D001200 ORTHO05D009778 4.9e-15 84.0 102 56.9
HanXRQChr11g0323751 Helianthus annuus HOM05D001200 ORTHO05D009778 4.9e-15 84.0 102 56.9
HanXRQChr15g0465441 Helianthus annuus HOM05D001200 ORTHO05D009778 4.9e-15 84.0 102 56.9
HanXRQChr15g0465451 Helianthus annuus HOM05D001200 ORTHO05D009778 4.9e-15 84.0 102 56.9
Nn064s42210 Nelumbo nucifera HOM05D001200 ORTHO05D009778 4.9e-15 84.0 102 57.8
HanXRQChr02g0059711 Helianthus annuus HOM05D001200 ORTHO05D002731 6.4e-15 83.6 101 56.4
HanXRQChr17g0569731 Helianthus annuus HOM05D001200 ORTHO05D009778 6.4e-15 83.6 101 56.4
HanXRQCPg0580351 Helianthus annuus HOM05D001200 ORTHO05D002731 6.4e-15 83.6 101 56.4
RcHm_v2.0_Chr5g0017211 Rosa chinensis HOM05D001200 ORTHO05D009778 6.4e-15 83.6 102 57.8
RcHm_v2.0_CPg0502771 Rosa chinensis HOM05D001200 ORTHO05D009778 6.4e-15 83.6 102 57.8
LjContig00318g0024402 Lotus japonicus HOM05D001200 ORTHO05D009778 1.1e-14 82.8 89 64.0
LjContig00319g0019579 Lotus japonicus HOM05D001200 ORTHO05D009778 1.1e-14 82.8 89 64.0
C07p33450 Brassica napus HOM05D001200 ORTHO05D009778 1.9e-14 82.0 102 56.9
C09p40190 Brassica napus HOM05D001200 ORTHO05D009778 1.9e-14 82.0 102 56.9
BolC2t10596H Brassica oleracea HOM05D001200 ORTHO05D009778 1.9e-14 82.0 102 56.9
BolC9t56923H Brassica oleracea HOM05D001200 ORTHO05D009778 1.9e-14 82.0 102 56.9
BolSC35t60704H Brassica oleracea HOM05D001200 ORTHO05D009778 1.9e-14 82.0 102 56.9
BolSC37t60793H Brassica oleracea HOM05D001200 ORTHO05D009778 1.9e-14 82.0 102 56.9
BolSC44t60822H Brassica oleracea HOM05D001200 ORTHO05D009778 1.9e-14 82.0 102 56.9
BolSC46t60958H Brassica oleracea HOM05D001200 ORTHO05D009778 1.9e-14 82.0 102 56.9
BolSC47t61065H Brassica oleracea HOM05D001200 ORTHO05D009778 1.9e-14 82.0 102 56.9
BraA10t43432Z Brassica rapa HOM05D001200 ORTHO05D009778 1.9e-14 82.0 102 56.9
BraSC59t46551Z Brassica rapa HOM05D001200 ORTHO05D009778 1.9e-14 82.0 102 56.9
HanXRQChr02g0040741 Helianthus annuus HOM05D001200 ORTHO05D009778 2.4e-14 81.6 102 55.9
Medtr4g006110 Medicago truncatula HOM05D007371 ORTHO05D009319 2.4e-14 81.6 102 56.9
Medtr5g063410 Medicago truncatula HOM05D007371 ORTHO05D009319 2.4e-14 81.6 102 56.9
Medtr7g021710 Medicago truncatula HOM05D007371 ORTHO05D009319 2.4e-14 81.6 102 56.9
Gohir.1Z049531 Gossypium hirsutum HOM05D001200 ORTHO05D009778 3.2e-14 81.3 102 55.9
Gohir.A02G134500 Gossypium hirsutum HOM05D001200 ORTHO05D009778 3.2e-14 81.3 102 55.9
Gohir.A04G053130 Gossypium hirsutum HOM05D001200 ORTHO05D009778 3.2e-14 81.3 102 55.9
Gohir.A09G040995 Gossypium hirsutum HOM05D001200 ORTHO05D009778 3.2e-14 81.3 102 55.9
Sed0017608 Sechium edule HOM05D000533 ORTHO05D006151 4.2e-14 80.9 102 54.9
AL9U11954 Arabidopsis lyrata HOM05D001200 ORTHO05D009778 5.5e-14 80.5 102 55.9
Lalb_Chr07g0191771 Lupinus albus HOM05D001200 ORTHO05D009778 5.5e-14 80.5 102 56.9
PSO548G0037 Papaver somniferum HOM05D001200 ORTHO05D009778 7.1e-14 80.1 102 55.9
RcHm_v2.0_Chr5g0043031 Rosa chinensis HOM05D001200 ORTHO05D009778 9.3e-14 79.7 100 56.0
HanXRQChr13g0393091 Helianthus annuus HOM05D001200 ORTHO05D009778 1.2e-13 79.3 102 53.9
arahy.Tifrunner.gnm1.ann1.4VL02K Arachis hypogaea HOM05D001200 ORTHO05D009778 2.1e-13 78.6 102 55.9
arahy.Tifrunner.gnm1.ann1.9I8ZI2 Arachis hypogaea HOM05D001200 ORTHO05D009778 2.1e-13 78.6 102 55.9
arahy.Tifrunner.gnm1.ann1.V71EA1 Arachis hypogaea HOM05D001200 ORTHO05D009778 2.1e-13 78.6 102 55.9
ATCG01070 Arabidopsis thaliana HOM05D001200 ORTHO05D009778 2.7e-13 78.2 102 54.9
BolC6t36203H Brassica oleracea HOM05D001200 ORTHO05D009778 2.7e-13 78.2 102 53.9
Lalb_Chr19g0127811 Lupinus albus HOM05D001200 ORTHO05D009778 7.9e-13 76.6 102 55.9
Nn1g08634 Nelumbo nucifera HOM05D001200 ORTHO05D009778 1.0e-12 76.3 102 54.9
Gohir.D13G164800 Gossypium hirsutum HOM05D001200 ORTHO05D009778 1.8e-12 75.5 102 52.0
Gohir.D04G175000 Gossypium hirsutum HOM05D001200 ORTHO05D009778 2.3e-12 75.1 102 52.9
Gohir.A08G113700 Gossypium hirsutum HOM05D001200 ORTHO05D009778 3.9e-12 74.3 102 52.9
Lj2g0021700 Lotus japonicus HOM05D001200 ORTHO05D009778 6.7e-12 73.6 89 60.7
SEGI_22361 Sequoiadendron giganteum HOM05D001200 ORTHO05D009778 6.7e-12 73.6 98 51.0
Manes.17G012600 Manihot esculenta HOM05D001200 ORTHO05D009778 9.6e-11 69.7 101 49.5
Nitab4.5_0001313g0070 Nicotiana tabacum HOM05D001200 ORTHO05D009778 4.8e-10 67.4 91 54.9
MBI10_g47590_MAGBIO Magnolia biondii HOM05D001200 ORTHO05D002731 1.1e-09 66.2 92 52.2
MBI10_g47593_MAGBIO Magnolia biondii HOM05D001200 ORTHO05D002731 1.1e-09 66.2 92 52.2
Lsat_1_v5_gn_1_14180 Lactuca sativa HOM05D001200 ORTHO05D009713 1.8e-09 65.5 41 90.2
Gohir.A01G112200 Gossypium hirsutum HOM05D001200 ORTHO05D009778 5.3e-09 63.9 102 47.1
Nitab4.5_0007979g0060 Nicotiana tabacum HOM05D001200 ORTHO05D009778 6.9e-09 63.5 95 50.5
EL10As15g24099 Beta vulgaris HOM05D001200 ORTHO05D009778 1.5e-08 62.4 93 49.5
EL10As15g24137 Beta vulgaris HOM05D001200 ORTHO05D002731 1.5e-08 62.4 93 49.5
Nn3g20216 Nelumbo nucifera HOM05D001200 ORTHO05D009778 3.4e-08 61.2 42 81.0
TPR.G17270 Trifolium pratense HOM05D001200 ORTHO05D009778 5.8e-08 60.5 43 81.4
Nn1g00558 Nelumbo nucifera HOM05D001200 ORTHO05D009778 4.9e-07 57.4 43 79.1
C02p52240 Brassica napus HOM05D001200 ORTHO05D009778 1.9e-06 55.5 40 77.5


User provided reference genes

Program Settings